Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47160 * 299.99845 * 3 2 1 6 6 H 1.48501 * 109.47361 * 59.99382 * 3 2 1 7 7 C 1.39891 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99620 * 192.66904 * 7 2 1 9 9 C 1.41211 * 120.00265 * 12.67366 * 7 2 1 10 10 C 1.40828 * 120.18138 * 206.56786 * 9 7 2 11 11 C 1.36435 * 119.81499 * 179.97438 * 10 9 7 12 12 C 1.39320 * 120.18088 * 359.97438 * 11 10 9 13 13 O 1.35678 * 119.81364 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00313 * 354.21023 * 13 12 11 15 15 H 1.09006 * 110.81379 * 326.03726 * 14 13 12 16 16 C 1.54963 * 110.76790 * 89.32928 * 14 13 12 17 17 C 1.54266 * 104.16147 * 156.22217 * 16 14 13 18 18 C 1.53871 * 106.64163 * 336.44649 * 17 16 14 19 19 H 1.08993 * 110.03142 * 240.69205 * 18 17 16 20 20 N 1.46894 * 110.03160 * 119.25724 * 18 17 16 21 21 C 1.54270 * 106.59870 * 359.97438 * 18 17 16 22 22 C 1.39310 * 120.36629 * 0.27844 * 12 11 10 23 23 C 1.36435 * 120.18511 * 359.43819 * 22 12 11 24 24 H 0.96998 * 120.00188 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.09226 * 359.94784 * 10 9 7 26 26 H 1.07998 * 119.91250 * 180.02562 * 11 10 9 27 27 H 1.09005 * 110.47485 * 37.56549 * 16 14 13 28 28 H 1.08997 * 110.53271 * 274.90759 * 16 14 13 29 29 H 1.09002 * 110.02826 * 217.13832 * 17 16 14 30 30 H 1.09003 * 110.03075 * 95.76191 * 17 16 14 31 31 H 1.00904 * 111.00404 * 61.45509 * 20 18 17 32 32 H 1.00901 * 111.00287 * 185.40886 * 20 18 17 33 33 H 1.08992 * 110.48958 * 142.28925 * 21 18 17 34 34 H 1.09008 * 110.48212 * 264.93058 * 21 18 17 35 35 H 1.08000 * 119.90937 * 179.70662 * 22 12 11 36 36 H 1.07991 * 120.09812 * 180.27728 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0686 -1.2227 0.2057 9 6 1.3281 -2.4197 -0.2672 10 6 1.8151 -3.6359 0.2495 11 6 1.1517 -4.7987 -0.0135 12 6 -0.0048 -4.7851 -0.7903 13 8 -0.6583 -5.9460 -1.0475 14 6 -0.0377 -7.1528 -0.6000 15 1 1.0479 -7.0759 -0.6613 16 6 -0.4823 -7.4965 0.8442 17 6 -0.2687 -9.0205 0.9522 18 6 -0.3105 -9.5742 -0.4828 19 1 -1.1263 -10.2900 -0.5832 20 7 0.9682 -10.2183 -0.8111 21 6 -0.5488 -8.3675 -1.4140 22 6 -0.4903 -3.5870 -1.3095 23 6 0.1580 -2.4147 -1.0512 24 1 -0.4850 0.8400 -0.0004 25 1 2.7115 -3.6481 0.8518 26 1 1.5236 -5.7322 0.3823 27 1 -1.5335 -7.2473 0.9890 28 1 0.1385 -6.9718 1.5704 29 1 -1.0643 -9.4676 1.5483 30 1 0.7001 -9.2305 1.4054 31 1 1.1496 -10.9968 -0.1954 32 1 0.9893 -10.5088 -1.7772 33 1 0.0234 -8.4775 -2.3351 34 1 -1.6110 -8.2595 -1.6342 35 1 -1.3848 -3.5857 -1.9147 36 1 -0.2221 -1.4862 -1.4507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403463673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -29.682767 kcal Electronic energy + Delta-G solvation = -17468.583516 eV Core-core repulsion = 14723.897844 eV Total energy + Delta-G solvation = -2744.685672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34237 -37.61005 -35.92805 -33.25879 -32.06917 -29.68467 -29.08855 -28.26100 -26.17988 -24.69060 -21.65401 -20.73883 -19.97592 -19.62662 -17.39730 -17.17558 -15.78499 -15.52491 -15.24771 -15.11477 -14.17003 -13.89985 -13.64714 -13.31915 -12.86897 -12.35941 -12.10498 -11.94496 -11.64720 -11.40035 -11.28649 -11.16033 -11.07852 -10.90435 -10.74932 -10.46252 -10.30778 -9.76547 -9.73271 -9.24610 -8.97763 -8.81683 -7.57135 -6.91546 -6.62970 -4.21166 2.82082 3.02097 3.12350 3.17738 3.24578 4.00308 4.12855 4.36836 4.64384 4.66995 4.73079 5.21826 5.40621 5.47114 5.54129 5.72412 5.76049 5.82702 5.94591 6.03293 6.07494 6.16744 6.24745 6.37018 6.42305 6.83339 7.04002 7.05362 7.18652 7.27101 7.27794 7.56262 7.63299 7.87410 8.07213 8.28227 8.54798 8.73489 8.97024 9.05822 10.31049 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.056922 B = 0.004386 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.784770 B = 6382.633502 C = 6548.063586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.194 4.194 11 C -0.169 4.169 12 C -0.001 4.001 13 O -0.322 6.322 14 C 0.093 3.907 15 H 0.078 0.922 16 C -0.144 4.144 17 C -0.117 4.117 18 C 0.088 3.912 19 H 0.039 0.961 20 N -0.844 5.844 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.130 4.130 24 H 0.278 0.722 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.339 0.661 32 H 0.340 0.660 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -13.658 -0.645 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.214 4.214 11 C -0.188 4.188 12 C -0.044 4.044 13 O -0.237 6.237 14 C 0.036 3.964 15 H 0.096 0.904 16 C -0.182 4.182 17 C -0.155 4.155 18 C -0.023 4.023 19 H 0.057 0.943 20 N -0.375 5.375 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.149 4.149 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.111 -12.805 -0.540 12.864 hybrid contribution -0.062 -0.141 0.079 0.173 sum -1.173 -12.946 -0.461 13.007 Atomic orbital electron populations 1.69815 1.07364 1.28725 1.37485 1.25856 0.94789 1.01105 0.92567 0.86258 0.80804 0.81163 0.78414 1.18581 1.19859 1.20132 1.19491 0.96307 0.90658 1.42893 0.90666 1.17612 0.92168 0.92171 0.89819 1.20611 1.02320 0.92846 1.05598 1.20466 0.97282 0.97840 1.03197 1.18627 0.95858 0.84814 1.05113 1.85848 1.47830 1.12475 1.77593 1.23023 0.97521 0.83444 0.92456 0.90382 1.22851 1.02396 0.94889 0.98089 1.22142 1.02050 0.95900 0.95368 1.21882 0.89784 0.95015 0.95657 0.94342 1.58832 1.34487 1.35704 1.08461 1.22402 1.01836 0.92774 0.98009 1.19873 1.00760 0.90730 1.03055 1.21056 0.97840 0.96098 0.99909 0.91148 0.88802 0.88512 0.90888 0.91076 0.91880 0.90785 0.84846 0.84710 0.90862 0.90488 0.88591 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.30 10.78 55.54 0.60 -20.70 16 2 C 0.07 1.85 5.23 -17.34 -0.09 1.76 16 3 Si 0.91 19.09 29.58 -169.99 -5.03 14.06 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.54 9.05 -37.83 -0.34 -12.88 16 8 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 9 C 0.08 2.31 5.57 -106.80 -0.60 1.71 16 10 C -0.19 -4.89 9.74 -39.25 -0.38 -5.27 16 11 C -0.17 -3.94 8.77 -39.83 -0.35 -4.29 16 12 C 0.00 -0.02 6.69 -38.78 -0.26 -0.28 16 13 O -0.32 -6.77 9.91 -18.74 -0.19 -6.95 16 14 C 0.09 1.57 2.68 -24.70 -0.07 1.50 16 15 H 0.08 1.40 6.33 -51.93 -0.33 1.07 16 16 C -0.14 -2.16 6.33 -25.03 -0.16 -2.32 16 17 C -0.12 -1.36 6.58 -25.62 -0.17 -1.52 16 18 C 0.09 0.96 4.03 -66.60 -0.27 0.69 16 19 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 20 N -0.84 -8.16 9.12 -3.72 -0.03 -8.19 16 21 C -0.11 -1.50 6.25 -25.07 -0.16 -1.66 16 22 C -0.13 -3.11 9.92 -39.83 -0.40 -3.50 16 23 C -0.13 -3.46 8.62 -39.25 -0.34 -3.80 16 24 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 25 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.10 2.01 5.45 -52.49 -0.29 1.72 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.12 7.56 -51.93 -0.39 0.73 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 31 H 0.34 2.62 9.06 -39.29 -0.36 2.26 16 32 H 0.34 2.80 8.92 -39.29 -0.35 2.45 16 33 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 34 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 36 H 0.13 3.50 6.11 -52.49 -0.32 3.18 16 LS Contribution 294.32 15.07 4.44 4.44 Total: -1.00 -28.79 294.32 -8.73 -37.52 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.94 Total: 9.71 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -3.57 Total: -29.87 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 0.57 Total: -28.89 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.19 Total: -6.95 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.79 -8.73 -37.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.834 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds