Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47160 * 299.99845 * 3 2 1 6 6 H 1.48501 * 109.47361 * 59.99382 * 3 2 1 7 7 C 1.39891 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99620 * 192.66904 * 7 2 1 9 9 C 1.41211 * 120.00265 * 12.67366 * 7 2 1 10 10 C 1.40828 * 120.18138 * 206.56786 * 9 7 2 11 11 C 1.36435 * 119.81499 * 179.97438 * 10 9 7 12 12 C 1.39320 * 120.18088 * 359.97438 * 11 10 9 13 13 O 1.35678 * 119.81364 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00313 * 354.21023 * 13 12 11 15 15 H 1.09006 * 110.81379 * 326.03726 * 14 13 12 16 16 C 1.54963 * 110.76790 * 89.32928 * 14 13 12 17 17 C 1.54266 * 104.16147 * 156.22217 * 16 14 13 18 18 C 1.53871 * 106.64163 * 336.44649 * 17 16 14 19 19 H 1.08993 * 110.03142 * 240.69205 * 18 17 16 20 20 N 1.46894 * 110.03160 * 119.25724 * 18 17 16 21 21 C 1.54270 * 106.59870 * 359.97438 * 18 17 16 22 22 C 1.39310 * 120.36629 * 0.27844 * 12 11 10 23 23 C 1.36435 * 120.18511 * 359.43819 * 22 12 11 24 24 H 0.96998 * 120.00188 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.09226 * 359.94784 * 10 9 7 26 26 H 1.07998 * 119.91250 * 180.02562 * 11 10 9 27 27 H 1.09005 * 110.47485 * 37.56549 * 16 14 13 28 28 H 1.08997 * 110.53271 * 274.90759 * 16 14 13 29 29 H 1.09002 * 110.02826 * 217.13832 * 17 16 14 30 30 H 1.09003 * 110.03075 * 95.76191 * 17 16 14 31 31 H 1.00904 * 111.00404 * 61.45509 * 20 18 17 32 32 H 1.00901 * 111.00287 * 185.40886 * 20 18 17 33 33 H 1.08992 * 110.48958 * 142.28925 * 21 18 17 34 34 H 1.09008 * 110.48212 * 264.93058 * 21 18 17 35 35 H 1.08000 * 119.90937 * 179.70662 * 22 12 11 36 36 H 1.07991 * 120.09812 * 180.27728 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0686 -1.2227 0.2057 9 6 1.3281 -2.4197 -0.2672 10 6 1.8151 -3.6359 0.2495 11 6 1.1517 -4.7987 -0.0135 12 6 -0.0048 -4.7851 -0.7903 13 8 -0.6583 -5.9460 -1.0475 14 6 -0.0377 -7.1528 -0.6000 15 1 1.0479 -7.0759 -0.6613 16 6 -0.4823 -7.4965 0.8442 17 6 -0.2687 -9.0205 0.9522 18 6 -0.3105 -9.5742 -0.4828 19 1 -1.1263 -10.2900 -0.5832 20 7 0.9682 -10.2183 -0.8111 21 6 -0.5488 -8.3675 -1.4140 22 6 -0.4903 -3.5870 -1.3095 23 6 0.1580 -2.4147 -1.0512 24 1 -0.4850 0.8400 -0.0004 25 1 2.7115 -3.6481 0.8518 26 1 1.5236 -5.7322 0.3823 27 1 -1.5335 -7.2473 0.9890 28 1 0.1385 -6.9718 1.5704 29 1 -1.0643 -9.4676 1.5483 30 1 0.7001 -9.2305 1.4054 31 1 1.1496 -10.9968 -0.1954 32 1 0.9893 -10.5088 -1.7772 33 1 0.0234 -8.4775 -2.3351 34 1 -1.6110 -8.2595 -1.6342 35 1 -1.3848 -3.5857 -1.9147 36 1 -0.2221 -1.4862 -1.4507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403463673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = -47.234736 kcal Electronic energy + Delta-G solvation = -17469.344626 eV Core-core repulsion = 14723.897844 eV Total energy + Delta-G solvation = -2745.446782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87337 -39.10428 -37.52597 -35.15581 -33.10886 -31.57539 -30.94986 -29.47257 -27.34371 -26.55202 -23.34567 -22.61523 -21.37838 -20.70725 -19.26561 -18.85681 -17.09890 -16.83714 -16.70413 -16.14192 -15.81078 -15.62998 -15.08674 -14.90270 -14.35653 -14.02640 -13.91316 -13.49021 -13.19137 -13.04959 -12.74287 -12.48478 -12.39170 -12.27878 -12.09842 -12.00105 -11.68262 -11.59780 -11.34238 -11.11695 -10.83590 -9.55463 -9.55219 -8.86333 -8.55018 -6.23750 0.94996 1.03489 1.40577 1.51671 1.55675 2.24503 2.63415 2.75608 3.56339 3.58479 3.66436 3.71915 4.11911 4.26618 4.34305 4.37024 4.45413 4.50007 4.56644 4.80095 4.86052 4.90963 5.02381 5.04778 5.11341 5.22241 5.23253 5.26059 5.34794 5.62076 5.68207 5.90996 6.06918 6.28414 6.31716 6.59464 6.66483 6.83784 6.96913 7.12133 8.41269 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.056922 B = 0.004386 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.784770 B = 6382.633502 C = 6548.063586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.052 3.948 10 C -0.205 4.205 11 C -0.166 4.166 12 C 0.007 3.993 13 O -0.330 6.330 14 C 0.078 3.922 15 H 0.067 0.933 16 C -0.144 4.144 17 C -0.109 4.109 18 C 0.096 3.904 19 H 0.062 0.938 20 N -0.854 5.854 21 C -0.108 4.108 22 C -0.138 4.138 23 C -0.147 4.147 24 H 0.286 0.714 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.352 0.648 32 H 0.349 0.651 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -15.089 -0.433 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.529 4.529 8 H 0.093 0.907 9 C 0.050 3.950 10 C -0.225 4.225 11 C -0.185 4.185 12 C -0.037 4.037 13 O -0.246 6.246 14 C 0.022 3.978 15 H 0.084 0.916 16 C -0.182 4.182 17 C -0.147 4.147 18 C -0.015 4.015 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.146 4.146 22 C -0.156 4.156 23 C -0.167 4.167 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.950 -14.278 -0.328 14.314 hybrid contribution -0.162 0.146 0.007 0.218 sum -1.112 -14.132 -0.321 14.180 Atomic orbital electron populations 1.69875 1.08851 1.30171 1.37671 1.26735 0.95595 1.04432 0.91446 0.85111 0.79243 0.76189 0.78826 1.18246 1.18940 1.19205 1.19741 0.96522 0.91784 1.44841 0.90736 1.17960 0.92954 0.93283 0.90762 1.20831 1.02906 0.92966 1.05768 1.20690 0.96884 0.98298 1.02623 1.18702 0.95486 0.85633 1.03838 1.85843 1.48156 1.12850 1.77756 1.23412 0.96949 0.82766 0.94684 0.91553 1.22827 1.01639 0.97523 0.96250 1.22121 1.03058 0.93168 0.96377 1.21782 0.91188 0.94401 0.94157 0.92040 1.58767 1.33821 1.36605 1.09513 1.22436 1.01865 0.92029 0.98278 1.20053 1.01246 0.90881 1.03454 1.20987 0.98529 0.96294 1.00888 0.90346 0.87817 0.85997 0.91411 0.92412 0.89756 0.90498 0.83373 0.83701 0.90556 0.90226 0.87235 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.18 10.78 21.82 0.24 -44.94 16 2 C 0.03 1.58 5.23 85.23 0.45 2.03 16 3 Si 0.99 39.29 29.58 68.60 2.03 41.32 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.50 -27.73 9.05 23.40 0.21 -27.52 16 8 H 0.07 3.99 7.88 -2.91 -0.02 3.97 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 10 C -0.21 -10.51 9.74 22.48 0.22 -10.29 16 11 C -0.17 -7.76 8.77 22.11 0.19 -7.56 16 12 C 0.01 0.35 6.69 22.79 0.15 0.50 16 13 O -0.33 -13.69 9.91 -89.95 -0.89 -14.58 16 14 C 0.08 2.54 2.68 31.91 0.09 2.63 16 15 H 0.07 2.31 6.33 -2.38 -0.02 2.29 16 16 C -0.14 -4.10 6.33 31.69 0.20 -3.90 16 17 C -0.11 -2.22 6.58 31.32 0.21 -2.01 16 18 C 0.10 1.78 4.03 45.64 0.18 1.96 16 19 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 20 N -0.85 -13.88 9.12 -165.69 -1.51 -15.39 16 21 C -0.11 -2.65 6.25 31.67 0.20 -2.45 16 22 C -0.14 -6.96 9.92 22.11 0.22 -6.74 16 23 C -0.15 -8.14 8.62 22.49 0.19 -7.95 16 24 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 25 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 26 H 0.12 4.97 5.45 -2.91 -0.02 4.96 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.06 1.77 7.56 -2.39 -0.02 1.75 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.54 7.92 -2.39 -0.02 1.52 16 31 H 0.35 4.27 9.06 -89.69 -0.81 3.46 16 32 H 0.35 4.71 8.92 -89.69 -0.80 3.91 16 33 H 0.08 1.81 7.94 -2.39 -0.02 1.79 16 34 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 36 H 0.11 6.51 6.11 -2.91 -0.02 6.50 16 Total: -1.00 -62.65 294.32 1.74 -60.91 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.51 Total: 31.14 kcal Atomic # 6 Polarization: -60.86 SS G_CDS: 2.39 Total: -58.47 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -1.28 Total: -60.33 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.89 Total: -14.58 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -62.65 1.74 -60.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.678 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds