Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48495 * 109.47001 * 85.96452 * 3 2 1 5 5 H 1.48503 * 109.46915 * 325.96326 * 3 2 1 6 6 H 1.48499 * 109.47041 * 205.96396 * 3 2 1 7 7 C 1.39892 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99980 * 35.24936 * 7 2 1 9 9 C 1.41219 * 120.00387 * 215.24852 * 7 2 1 10 10 C 1.40830 * 120.17441 * 23.59726 * 9 7 2 11 11 C 1.36439 * 119.81022 * 179.78769 * 10 9 7 12 12 C 1.39317 * 120.18471 * 0.46857 * 11 10 9 13 13 O 1.35664 * 119.81920 * 179.75857 * 12 11 10 14 14 C 1.42898 * 117.00164 * 185.95410 * 13 12 11 15 15 H 1.09000 * 110.01873 * 34.71901 * 14 13 12 16 16 C 1.54266 * 110.03431 * 273.27583 * 14 13 12 17 17 C 1.54889 * 104.19970 * 217.10352 * 16 14 13 18 18 C 1.54885 * 102.74522 * 37.94368 * 17 16 14 19 19 H 1.08992 * 110.49126 * 80.73814 * 18 17 16 20 20 N 1.46904 * 110.59967 * 203.32501 * 18 17 16 21 21 C 1.53875 * 110.03719 * 156.11084 * 14 13 12 22 22 C 1.39312 * 120.36195 * 359.78762 * 12 11 10 23 23 C 1.36440 * 120.18640 * 359.97087 * 22 12 11 24 24 H 0.97002 * 119.99819 * 185.10453 * 1 2 3 25 25 H 1.08003 * 120.09866 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.90843 * 180.21054 * 11 10 9 27 27 H 1.09001 * 110.48687 * 335.78650 * 16 14 13 28 28 H 1.09008 * 110.48879 * 98.42370 * 16 14 13 29 29 H 1.08994 * 110.75670 * 279.62779 * 17 16 14 30 30 H 1.08999 * 110.75665 * 156.25973 * 17 16 14 31 31 H 1.00900 * 110.99550 * 294.84591 * 20 18 17 32 32 H 1.00905 * 110.99567 * 58.78957 * 20 18 17 33 33 H 1.08998 * 110.03270 * 238.57017 * 21 14 13 34 34 H 1.09000 * 110.02780 * 359.95272 * 21 14 13 35 35 H 1.07997 * 119.90960 * 179.97438 * 22 12 11 36 36 H 1.07998 * 120.09319 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4050 2.0956 1.3966 5 1 1.4856 2.6265 -0.7837 6 1 3.5805 1.4169 -0.6130 7 6 2.0083 -1.2115 0.0005 8 1 1.6167 -2.0614 -0.5389 9 6 3.2263 -1.3234 0.7064 10 6 3.5047 -0.4553 1.7798 11 6 4.6820 -0.5728 2.4593 12 6 5.6115 -1.5418 2.0879 13 8 6.7818 -1.6489 2.7656 14 6 7.7453 -2.5722 2.2546 15 1 7.7009 -2.5934 1.1658 16 6 7.4799 -3.9816 2.8229 17 6 8.8936 -4.5732 3.0473 18 6 9.7001 -3.3501 3.5498 19 1 9.5181 -3.1831 4.6114 20 7 11.1352 -3.5388 3.2991 21 6 9.1571 -2.1707 2.7168 22 6 5.3461 -2.4009 1.0238 23 6 4.1715 -2.2998 0.3370 24 1 -0.4850 -0.8367 0.0747 25 1 2.7868 0.2989 2.0667 26 1 4.8956 0.0899 3.2849 27 1 6.9392 -3.9166 3.7671 28 1 6.9238 -4.5841 2.1045 29 1 9.3072 -4.9509 2.1123 30 1 8.8686 -5.3570 3.8044 31 1 11.4986 -4.3089 3.8404 32 1 11.3159 -3.6714 2.3152 33 1 9.7979 -1.9979 1.8523 34 1 9.1073 -1.2711 3.3302 35 1 6.0720 -3.1491 0.7418 36 1 3.9674 -2.9664 -0.4879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403463674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = -54.093706 kcal Electronic energy + Delta-G solvation = -17516.070002 eV Core-core repulsion = 14770.325793 eV Total energy + Delta-G solvation = -2745.744210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02096 -39.23761 -37.57644 -35.41485 -33.18296 -31.70729 -31.40350 -29.53087 -27.11286 -26.16932 -23.53606 -22.39078 -21.69227 -21.05402 -19.99076 -19.08867 -17.21811 -16.95706 -16.39710 -16.26878 -15.93236 -15.39818 -15.21019 -14.79813 -14.52756 -14.35524 -14.03065 -13.52877 -13.35000 -13.07776 -12.92729 -12.71698 -12.51709 -12.19637 -12.05869 -11.90951 -11.77648 -11.65394 -11.34970 -11.12187 -10.76706 -9.72640 -9.57990 -9.43840 -9.04698 -6.39092 0.78593 0.83819 1.40261 1.55131 1.76000 2.20378 2.49842 2.59204 3.40819 3.46199 3.56725 3.77034 4.13605 4.15878 4.23224 4.28543 4.40385 4.43507 4.53755 4.62114 4.68315 4.82004 4.90176 4.95030 5.04879 5.13109 5.19610 5.29120 5.38507 5.45226 5.51527 5.75596 5.87234 6.03932 6.24372 6.34882 6.55192 6.63768 6.77416 6.99088 7.89710 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.052549 B = 0.004780 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.711115 B = 5855.987560 C = 6132.874792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 1.088 2.912 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.567 4.567 8 H 0.050 0.950 9 C 0.055 3.945 10 C -0.223 4.223 11 C -0.106 4.106 12 C -0.001 4.001 13 O -0.327 6.327 14 C 0.075 3.925 15 H 0.068 0.932 16 C -0.144 4.144 17 C -0.146 4.146 18 C 0.096 3.904 19 H 0.084 0.916 20 N -0.845 5.845 21 C -0.109 4.109 22 C -0.148 4.148 23 C -0.206 4.206 24 H 0.283 0.717 25 H 0.106 0.894 26 H 0.123 0.877 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.352 0.648 32 H 0.348 0.652 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.584 -5.877 4.833 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.189 4.189 3 Si 0.907 3.093 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.068 0.932 9 C 0.052 3.948 10 C -0.242 4.242 11 C -0.125 4.125 12 C -0.045 4.045 13 O -0.243 6.243 14 C 0.018 3.982 15 H 0.086 0.914 16 C -0.182 4.182 17 C -0.185 4.185 18 C -0.016 4.016 19 H 0.102 0.898 20 N -0.375 5.375 21 C -0.147 4.147 22 C -0.167 4.167 23 C -0.225 4.225 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.141 0.859 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.432 -3.456 5.210 18.519 hybrid contribution -1.036 -3.076 -0.748 3.330 sum 16.395 -6.532 4.462 18.204 Atomic orbital electron populations 1.70634 1.09211 1.32574 1.31770 1.28173 0.95274 1.06616 0.88870 0.83458 0.75284 0.71230 0.79285 1.18156 1.19473 1.19328 1.20370 1.06656 0.99865 1.32659 0.93184 1.17823 0.92229 0.92746 0.91965 1.20725 0.98898 1.04834 0.99728 1.19982 0.93360 0.98237 1.00910 1.18636 0.88378 1.00240 0.97242 1.85929 1.24205 1.61711 1.52439 1.23143 0.88188 0.88669 0.98166 0.91441 1.22836 0.98613 0.95272 1.01500 1.23240 0.94443 0.98604 1.02221 1.22133 0.87197 0.92856 0.99393 0.89766 1.58808 1.13477 1.51339 1.13924 1.22172 0.92139 0.99355 1.01043 1.20800 0.98238 1.00371 0.97255 1.20760 0.95080 1.03932 1.02711 0.90698 0.87598 0.85872 0.91601 0.91543 0.90173 0.90040 0.83368 0.83878 0.89402 0.91068 0.85272 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.00 13.66 21.82 0.30 -44.70 16 2 C 0.03 1.53 5.11 85.24 0.44 1.97 16 3 Si 1.09 48.50 25.82 68.60 1.77 50.27 16 4 H -0.26 -10.68 6.57 99.48 0.65 -10.03 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.57 -31.96 9.28 23.40 0.22 -31.75 16 8 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 9 C 0.05 2.89 5.15 -21.28 -0.11 2.78 16 10 C -0.22 -10.97 7.63 22.48 0.17 -10.80 16 11 C -0.11 -4.73 9.92 22.11 0.22 -4.51 16 12 C 0.00 -0.05 6.65 22.79 0.15 0.10 16 13 O -0.33 -11.97 9.69 -89.80 -0.87 -12.84 16 14 C 0.08 2.09 2.80 31.32 0.09 2.18 16 15 H 0.07 1.90 6.33 -2.39 -0.02 1.89 16 16 C -0.14 -3.48 6.10 31.67 0.19 -3.28 16 17 C -0.15 -2.44 6.56 31.88 0.21 -2.23 16 18 C 0.10 1.71 4.00 45.99 0.18 1.89 16 19 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 20 N -0.85 -11.89 9.32 -164.24 -1.53 -13.42 16 21 C -0.11 -2.44 6.33 31.32 0.20 -2.25 16 22 C -0.15 -6.18 8.70 22.11 0.19 -5.99 16 23 C -0.21 -9.82 9.74 22.48 0.22 -9.60 16 24 H 0.28 15.35 8.73 -92.71 -0.81 14.54 16 25 H 0.11 5.17 5.16 -2.91 -0.02 5.16 16 26 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 28 H 0.07 1.63 7.49 -2.38 -0.02 1.61 16 29 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.35 3.68 9.08 -89.69 -0.81 2.86 16 32 H 0.35 4.08 8.86 -89.69 -0.79 3.29 16 33 H 0.09 1.75 7.92 -2.39 -0.02 1.73 16 34 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 35 H 0.13 4.52 5.30 -2.91 -0.02 4.50 16 36 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -60.08 290.73 1.44 -58.64 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.60 Total: 23.54 kcal Atomic # 6 Polarization: -63.87 SS G_CDS: 2.37 Total: -61.50 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -1.23 Total: -58.12 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.87 Total: -12.84 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.77 Total: 50.27 kcal Total: -60.08 1.44 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.550 kcal (2) G-P(sol) polarization free energy of solvation -60.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds