Wall clock time and date at job start Mon Mar 30 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86795 * 120.00010 * 2 1 4 4 H 1.48494 * 109.47378 * 240.00083 * 3 2 1 5 5 H 1.48500 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46898 * 119.99928 * 3 2 1 7 7 C 1.39891 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 193.62132 * 7 2 1 9 9 C 1.41216 * 120.00015 * 13.63186 * 7 2 1 10 10 C 1.40836 * 120.17489 * 206.33576 * 9 7 2 11 11 C 1.36442 * 119.80786 * 179.97438 * 10 9 7 12 12 C 1.39302 * 120.18691 * 359.97438 * 11 10 9 13 13 O 1.35680 * 119.82009 * 180.02562 * 12 11 10 14 14 C 1.42896 * 117.00081 * 185.43276 * 13 12 11 15 15 H 1.09005 * 110.54170 * 34.29307 * 14 13 12 16 16 C 1.54889 * 110.48688 * 271.68044 * 14 13 12 17 17 C 1.54894 * 102.74920 * 203.37870 * 16 14 13 18 18 C 1.54265 * 104.19413 * 37.94482 * 17 16 14 19 19 H 1.08999 * 110.03275 * 217.10677 * 18 17 16 20 20 N 1.46906 * 110.07436 * 95.69213 * 18 17 16 21 21 C 1.53883 * 106.59811 * 336.38795 * 18 17 16 22 22 C 1.39321 * 120.36582 * 0.27090 * 12 11 10 23 23 C 1.36440 * 120.18175 * 359.45084 * 22 12 11 24 24 H 0.96992 * 119.99697 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.09863 * 359.94750 * 10 9 7 26 26 H 1.08001 * 119.90319 * 180.02562 * 11 10 9 27 27 H 1.08995 * 110.75631 * 321.69402 * 16 14 13 28 28 H 1.08999 * 110.75791 * 84.88061 * 16 14 13 29 29 H 1.08994 * 110.48909 * 279.26611 * 17 16 14 30 30 H 1.09005 * 110.48452 * 156.62032 * 17 16 14 31 31 H 1.00899 * 110.99336 * 62.12206 * 20 18 17 32 32 H 1.00898 * 110.99646 * 186.07123 * 20 18 17 33 33 H 1.08999 * 110.02738 * 119.28647 * 21 18 17 34 34 H 1.09000 * 110.03147 * 240.66512 * 21 18 17 35 35 H 1.07997 * 119.90517 * 179.69907 * 22 12 11 36 36 H 1.08001 * 120.09169 * 180.27196 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6963 1.2126 7 6 2.0083 -1.2115 0.0005 8 1 3.0655 -1.2246 0.2208 9 6 1.3320 -2.4174 -0.2872 10 6 1.8144 -3.6385 0.2224 11 6 1.1548 -4.7991 -0.0598 12 6 0.0071 -4.7783 -0.8490 13 8 -0.6432 -5.9368 -1.1246 14 6 -1.7420 -5.8632 -2.0352 15 1 -1.5549 -5.1096 -2.8003 16 6 -3.0553 -5.5503 -1.2760 17 6 -4.1426 -6.0967 -2.2343 18 6 -3.5250 -7.3875 -2.8106 19 1 -3.8036 -7.4993 -3.8584 20 7 -3.9827 -8.5524 -2.0414 21 6 -1.9986 -7.2390 -2.6840 22 6 -0.4738 -3.5752 -1.3612 23 6 0.1708 -2.4051 -1.0837 24 1 -0.4849 0.8400 -0.0004 25 1 2.7041 -3.6563 0.8344 26 1 1.5232 -5.7363 0.3305 27 1 -3.0835 -6.0746 -0.3208 28 1 -3.1701 -4.4764 -1.1290 29 1 -4.3431 -5.3809 -3.0315 30 1 -5.0564 -6.3232 -1.6849 31 1 -4.9842 -8.6570 -2.1053 32 1 -3.5115 -9.3923 -2.3426 33 1 -1.5977 -8.0308 -2.0512 34 1 -1.5364 -7.2796 -3.6703 35 1 -1.3615 -3.5684 -1.9762 36 1 -0.2058 -1.4728 -1.4779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403463675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:13 Heat of formation + Delta-G solvation = -29.420762 kcal Electronic energy + Delta-G solvation = -17521.857234 eV Core-core repulsion = 14777.182923 eV Total energy + Delta-G solvation = -2744.674311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.34629 -37.59269 -35.91105 -33.29184 -31.99646 -29.59548 -29.20797 -28.27006 -26.12883 -24.68025 -21.55608 -20.94687 -19.98235 -19.46337 -17.41805 -17.11283 -15.87882 -15.49511 -15.45830 -14.90975 -14.21417 -13.90471 -13.50733 -13.19144 -12.83231 -12.49166 -12.08399 -11.94309 -11.62915 -11.33003 -11.22395 -11.13823 -11.03710 -10.91137 -10.82668 -10.61914 -10.25321 -9.75252 -9.66912 -9.27571 -8.98387 -8.77119 -7.59588 -6.91798 -6.64793 -4.21774 2.82360 3.01811 3.10067 3.13201 3.25581 3.98970 4.09011 4.46211 4.66615 4.70788 4.79501 5.07558 5.49242 5.50140 5.57011 5.71156 5.77652 5.85472 5.97527 6.05785 6.09760 6.18180 6.29933 6.41071 6.51096 6.83067 6.96025 7.08478 7.12066 7.31201 7.34756 7.48682 7.61732 7.97473 8.05376 8.21828 8.52471 8.72081 8.95621 9.05201 10.29425 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045433 B = 0.004714 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.142345 B = 5938.457980 C = 6369.890886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.085 3.915 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.002 4.002 13 O -0.319 6.319 14 C 0.091 3.909 15 H 0.070 0.930 16 C -0.139 4.139 17 C -0.117 4.117 18 C 0.089 3.911 19 H 0.036 0.964 20 N -0.842 5.842 21 C -0.117 4.117 22 C -0.176 4.176 23 C -0.130 4.130 24 H 0.278 0.722 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.338 0.662 32 H 0.340 0.660 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 -8.925 -5.807 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.083 3.917 10 C -0.214 4.214 11 C -0.137 4.137 12 C -0.045 4.045 13 O -0.235 6.235 14 C 0.034 3.966 15 H 0.088 0.912 16 C -0.177 4.177 17 C -0.155 4.155 18 C -0.022 4.022 19 H 0.054 0.946 20 N -0.372 5.372 21 C -0.155 4.155 22 C -0.195 4.195 23 C -0.149 4.149 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.823 -8.549 -5.092 12.065 hybrid contribution -0.170 0.632 -0.965 1.166 sum -6.993 -7.917 -6.057 12.176 Atomic orbital electron populations 1.69812 1.07390 1.28911 1.37248 1.25851 0.94772 1.01084 0.92544 0.86361 0.80012 0.80422 0.79822 1.19002 1.20469 1.19128 1.19432 0.96578 0.90775 1.42676 0.90677 1.17594 0.92107 0.92182 0.89860 1.20613 1.02542 0.92538 1.05666 1.19621 0.94924 0.97619 1.01519 1.18610 0.96246 0.84030 1.05642 1.85872 1.44432 1.31364 1.61856 1.22888 0.85957 0.96474 0.91312 0.91181 1.22937 0.94015 1.01275 0.99438 1.22333 0.98608 0.95580 0.98934 1.21889 0.94830 0.91415 0.94068 0.94589 1.58800 1.10297 1.06103 1.62049 1.22229 0.94440 0.98254 1.00551 1.20663 1.01250 0.93069 1.04533 1.21013 0.97956 0.96316 0.99650 0.91080 0.88299 0.88605 0.90263 0.91171 0.91448 0.91114 0.84963 0.84762 0.89630 0.91476 0.88586 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.21 10.82 55.55 0.60 -20.61 16 2 C 0.07 1.86 5.21 -17.33 -0.09 1.77 16 3 Si 0.91 19.00 29.58 -169.99 -5.03 13.97 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.51 9.05 -37.83 -0.34 -12.86 16 8 H 0.08 1.94 7.88 -52.49 -0.41 1.52 16 9 C 0.08 2.30 5.57 -106.80 -0.59 1.71 16 10 C -0.19 -4.88 9.74 -39.25 -0.38 -5.27 16 11 C -0.12 -2.82 9.92 -39.83 -0.40 -3.22 16 12 C 0.00 -0.05 6.68 -38.78 -0.26 -0.31 16 13 O -0.32 -6.75 9.84 -18.74 -0.18 -6.93 16 14 C 0.09 1.55 2.68 -25.07 -0.07 1.48 16 15 H 0.07 1.21 6.29 -51.93 -0.33 0.88 16 16 C -0.14 -2.18 6.34 -24.74 -0.16 -2.34 16 17 C -0.12 -1.41 6.53 -25.07 -0.16 -1.57 16 18 C 0.09 1.00 4.03 -66.59 -0.27 0.74 16 19 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 20 N -0.84 -8.48 9.10 -3.71 -0.03 -8.51 16 21 C -0.12 -1.59 6.31 -25.61 -0.16 -1.75 16 22 C -0.18 -4.21 8.72 -39.83 -0.35 -4.56 16 23 C -0.13 -3.43 8.62 -39.25 -0.34 -3.76 16 24 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.17 7.51 -51.93 -0.39 0.78 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 31 H 0.34 2.74 9.04 -39.29 -0.36 2.38 16 32 H 0.34 2.91 9.01 -39.29 -0.35 2.55 16 33 H 0.09 1.24 7.83 -51.93 -0.41 0.83 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 2.06 5.41 -52.49 -0.28 1.77 16 36 H 0.12 3.33 6.13 -52.49 -0.32 3.00 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -28.76 294.19 -8.72 -37.48 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.94 Total: 10.10 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -3.57 Total: -29.94 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.57 Total: -29.12 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.18 Total: -6.93 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.76 -8.72 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.058 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds