Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48509 * 109.46915 * 239.99945 * 3 2 1 5 5 H 1.48497 * 109.47477 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47434 * 120.00513 * 3 2 1 7 7 C 1.39889 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00174 * 196.46359 * 7 2 1 9 9 C 1.41216 * 119.99756 * 16.45411 * 7 2 1 10 10 C 1.40833 * 120.18064 * 25.42519 * 9 7 2 11 11 C 1.36439 * 119.81022 * 180.02562 * 10 9 7 12 12 C 1.39301 * 120.18666 * 359.97438 * 11 10 9 13 13 O 1.35679 * 119.81948 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99656 * 354.70416 * 13 12 11 15 15 H 1.08998 * 110.05818 * 324.30339 * 14 13 12 16 16 C 1.53874 * 110.02919 * 85.72295 * 14 13 12 17 17 C 1.54266 * 106.59989 * 119.28562 * 16 14 13 18 18 C 1.54886 * 104.19682 * 23.60603 * 17 16 14 19 19 H 1.09002 * 110.91167 * 80.44737 * 18 17 16 20 20 N 1.46901 * 110.75976 * 203.74362 * 18 17 16 21 21 C 1.54261 * 110.03311 * 202.88648 * 14 13 12 22 22 C 1.39308 * 120.36795 * 0.25467 * 12 11 10 23 23 C 1.36435 * 120.18366 * 359.48669 * 22 12 11 24 24 H 0.97007 * 119.99972 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.09182 * 0.03814 * 10 9 7 26 26 H 1.08004 * 119.90102 * 179.97438 * 11 10 9 27 27 H 1.09001 * 110.02875 * 238.56936 * 16 14 13 28 28 H 1.08999 * 110.03196 * 359.94562 * 16 14 13 29 29 H 1.09003 * 110.48378 * 264.92988 * 17 16 14 30 30 H 1.09006 * 110.48666 * 142.28460 * 17 16 14 31 31 H 1.00898 * 110.99873 * 293.32864 * 20 18 17 32 32 H 1.00903 * 110.99535 * 57.28350 * 20 18 17 33 33 H 1.09005 * 110.48818 * 98.43092 * 21 14 13 34 34 H 1.09001 * 110.59979 * 335.83897 * 21 14 13 35 35 H 1.08005 * 119.91157 * 179.71803 * 22 12 11 36 36 H 1.08001 * 120.10040 * 180.25703 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6964 -1.2126 5 1 1.2778 2.7465 -0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0082 -1.2115 -0.0005 8 1 3.0550 -1.2308 0.2645 9 6 1.3455 -2.4092 -0.3475 10 6 0.2087 -2.3743 -1.1781 11 6 -0.4261 -3.5361 -1.5081 12 6 0.0475 -4.7543 -1.0264 13 8 -0.5899 -5.9050 -1.3588 14 6 -1.8015 -5.7828 -2.1065 15 1 -2.3509 -4.8976 -1.7860 16 6 -1.4862 -5.6919 -3.6099 17 6 -2.1748 -6.8996 -4.2784 18 6 -3.3177 -7.2736 -3.3022 19 1 -4.1779 -6.6188 -3.4412 20 7 -3.7049 -8.6809 -3.4685 21 6 -2.6707 -7.0426 -1.9140 22 6 1.1684 -4.7972 -0.2004 23 6 1.8180 -3.6452 0.1349 24 1 -0.4850 0.8401 0.0004 25 1 -0.1593 -1.4307 -1.5529 26 1 -1.2982 -3.5110 -2.1447 27 1 -1.8825 -4.7626 -4.0189 28 1 -0.4089 -5.7401 -3.7690 29 1 -1.4748 -7.7288 -4.3818 30 1 -2.5801 -6.6179 -5.2503 31 1 -4.1270 -8.8354 -4.3719 32 1 -2.9144 -9.2922 -3.3293 33 1 -3.4379 -6.8652 -1.1603 34 1 -2.0527 -7.8959 -1.6345 35 1 1.5266 -5.7454 0.1727 36 1 2.6893 -3.6804 0.7720 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403463676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = -50.013765 kcal Electronic energy + Delta-G solvation = -17492.336712 eV Core-core repulsion = 14746.769422 eV Total energy + Delta-G solvation = -2745.567290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95702 -39.12206 -37.50191 -35.19984 -33.13931 -31.53612 -31.01753 -29.54066 -27.18290 -26.52953 -23.16838 -22.79585 -21.40394 -20.96757 -19.28044 -18.70622 -17.43927 -17.21686 -16.56256 -16.03643 -15.76088 -15.33260 -14.97561 -14.64023 -14.37632 -14.19717 -13.85028 -13.63506 -13.19456 -13.15103 -12.76616 -12.72068 -12.55365 -12.26964 -12.20384 -11.94317 -11.68623 -11.53512 -11.40788 -11.13797 -10.83728 -9.60313 -9.56201 -8.89000 -8.59196 -6.23423 0.94051 1.04286 1.39252 1.50161 1.54021 2.22753 2.58653 2.74104 3.43787 3.56951 3.70992 3.89635 3.94540 4.23473 4.35711 4.37579 4.40618 4.45683 4.57465 4.62217 4.82096 4.88368 4.97844 5.00956 5.15163 5.15611 5.22315 5.28410 5.37402 5.55266 5.67087 5.98402 6.06183 6.21663 6.24314 6.56989 6.62735 6.81397 6.95150 7.11416 8.37546 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.047372 B = 0.004569 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.927457 B = 6126.946812 C = 6427.688296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.154 4.154 11 C -0.173 4.173 12 C 0.002 3.998 13 O -0.328 6.328 14 C 0.076 3.924 15 H 0.060 0.940 16 C -0.143 4.143 17 C -0.145 4.145 18 C 0.098 3.902 19 H 0.097 0.903 20 N -0.843 5.843 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.205 4.205 24 H 0.287 0.713 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.354 0.646 32 H 0.346 0.654 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 -9.200 -7.687 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.174 4.174 11 C -0.192 4.192 12 C -0.042 4.042 13 O -0.244 6.244 14 C 0.019 3.981 15 H 0.078 0.922 16 C -0.181 4.181 17 C -0.184 4.184 18 C -0.014 4.014 19 H 0.115 0.885 20 N -0.373 5.373 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.224 4.224 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.421 -9.135 -7.006 13.182 hybrid contribution 1.041 1.148 -0.620 1.669 sum -5.380 -7.987 -7.626 12.284 Atomic orbital electron populations 1.69883 1.08922 1.30395 1.36886 1.26715 0.95507 1.04394 0.91341 0.85250 0.78722 0.75715 0.79985 1.18573 1.19282 1.18432 1.19706 0.97854 0.92287 1.43335 0.90616 1.17947 0.92837 0.93197 0.90788 1.20932 0.99167 0.96714 1.00570 1.20809 1.01616 0.92477 1.04304 1.18700 0.97202 0.84726 1.03574 1.85886 1.37804 1.29179 1.71580 1.23076 0.84344 0.99468 0.91214 0.92195 1.22610 1.01078 0.99894 0.94556 1.23109 0.98254 0.97418 0.99643 1.22274 0.96029 0.90710 0.92392 0.88500 1.58758 1.35812 1.03923 1.38798 1.22360 0.97474 0.96046 0.98536 1.19916 0.95997 0.98184 1.00243 1.20807 1.03502 0.92355 1.05761 0.90294 0.87572 0.86631 0.90964 0.92532 0.91248 0.89803 0.83210 0.84035 0.90497 0.90593 0.86319 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.33 10.93 21.82 0.24 -44.09 16 2 C 0.03 1.74 5.16 85.23 0.44 2.18 16 3 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.58 9.04 23.40 0.21 -27.36 16 8 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 9 C 0.05 3.01 5.57 -21.28 -0.12 2.89 16 10 C -0.15 -8.30 8.63 22.48 0.19 -8.11 16 11 C -0.17 -8.27 8.68 22.11 0.19 -8.08 16 12 C 0.00 0.08 6.65 22.78 0.15 0.24 16 13 O -0.33 -13.24 9.69 -89.97 -0.87 -14.12 16 14 C 0.08 2.42 2.81 31.32 0.09 2.51 16 15 H 0.06 2.03 6.36 -2.39 -0.02 2.02 16 16 C -0.14 -3.95 5.85 31.32 0.18 -3.76 16 17 C -0.14 -2.86 6.49 31.67 0.21 -2.66 16 18 C 0.10 1.89 4.05 46.21 0.19 2.08 16 19 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 20 N -0.84 -13.47 9.38 -163.34 -1.53 -15.00 16 21 C -0.11 -2.69 6.22 31.67 0.20 -2.49 16 22 C -0.12 -5.86 9.92 22.11 0.22 -5.64 16 23 C -0.20 -10.37 9.74 22.49 0.22 -10.15 16 24 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 25 H 0.11 5.93 6.17 -2.91 -0.02 5.91 16 26 H 0.12 4.90 5.63 -2.91 -0.02 4.88 16 27 H 0.07 1.91 8.03 -2.39 -0.02 1.89 16 28 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 29 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.35 4.17 9.08 -89.70 -0.81 3.35 16 32 H 0.35 5.12 8.91 -89.69 -0.80 4.32 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.08 1.98 8.02 -2.39 -0.02 1.96 16 35 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -60.94 294.73 1.72 -59.22 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.52 Total: 31.59 kcal Atomic # 6 Polarization: -60.73 SS G_CDS: 2.37 Total: -58.36 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.29 Total: -59.08 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.87 Total: -14.12 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -60.94 1.72 -59.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.207 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds