Wall clock time and date at job start Mon Mar 30 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47581 * 2 1 4 4 C 1.50709 * 109.47309 * 239.99855 * 2 1 3 5 5 H 1.07995 * 120.00167 * 236.12811 * 4 2 1 6 6 C 1.37881 * 119.99658 * 56.12234 * 4 2 1 7 7 N 1.31511 * 119.99991 * 6.64689 * 6 4 2 8 8 Si 1.86799 * 119.99659 * 186.64718 * 6 4 2 9 9 H 1.48497 * 109.46992 * 85.11122 * 8 6 4 10 10 H 1.48503 * 109.46908 * 205.11209 * 8 6 4 11 11 H 1.48497 * 109.47268 * 325.11293 * 8 6 4 12 12 C 1.50705 * 109.47039 * 120.00089 * 2 1 3 13 13 C 1.34241 * 126.49509 * 119.97152 * 12 2 1 14 14 N 1.36810 * 109.93024 * 180.02562 * 13 12 2 15 15 H 0.97001 * 125.06406 * 179.97438 * 14 13 12 16 16 C 1.37806 * 109.86408 * 0.24851 * 14 13 12 17 17 C 1.39102 * 133.39415 * 180.44208 * 16 14 13 18 18 C 1.37715 * 119.95149 * 179.60346 * 17 16 14 19 19 C 1.39033 * 120.64941 * 359.73530 * 18 17 16 20 20 F 1.35098 * 119.82916 * 179.97438 * 19 18 17 21 21 C 1.37793 * 120.33161 * 0.02562 * 19 18 17 22 22 C 1.39665 * 119.63121 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.47104 * 293.97413 * 1 2 3 24 24 H 1.09003 * 109.46631 * 53.96817 * 1 2 3 25 25 H 1.08997 * 109.47566 * 173.96928 * 1 2 3 26 26 H 1.09003 * 109.47357 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46971 * 300.00106 * 3 2 1 28 28 H 1.08997 * 109.47001 * 59.99513 * 3 2 1 29 29 H 0.96998 * 119.99984 * 179.97438 * 7 6 4 30 30 H 1.08008 * 125.03616 * 0.04365 * 13 12 2 31 31 H 1.07998 * 120.02249 * 359.36192 * 17 16 14 32 32 H 1.07998 * 119.66884 * 179.71708 * 18 17 16 33 33 H 1.07998 * 120.17738 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.7038 -1.5506 -1.1326 6 6 1.6346 -0.2878 -2.4812 7 7 0.9243 0.8116 -2.6087 8 14 2.1048 -1.2769 -3.9945 9 1 1.1128 -2.3618 -4.2046 10 1 2.1228 -0.3858 -5.1823 11 1 3.4524 -1.8693 -3.7997 12 6 2.0323 -0.7105 1.2305 13 6 2.8067 -1.8066 1.2593 14 7 3.0596 -2.1650 2.5552 15 1 3.5963 -2.9253 2.8285 16 6 2.4332 -1.2883 3.4143 17 6 2.3698 -1.1896 4.8003 18 6 1.6501 -0.1714 5.3849 19 6 0.9869 0.7676 4.6028 20 9 0.2853 1.7593 5.1938 21 6 1.0409 0.6910 3.2281 22 6 1.7662 -0.3371 2.6217 23 1 -0.3633 0.4176 0.9390 24 1 -0.3633 0.6045 -0.8311 25 1 -0.3634 -1.0219 -0.1080 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.6448 1.1091 -3.4886 30 1 3.1758 -2.3282 0.3885 31 1 2.8813 -1.9133 5.4175 32 1 1.6001 -0.1018 6.4615 33 1 0.5252 1.4219 2.6230 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527393256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:15 Heat of formation + Delta-G solvation = -9.113534 kcal Electronic energy + Delta-G solvation = -17744.297032 eV Core-core repulsion = 14877.043004 eV Total energy + Delta-G solvation = -2867.254028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -49.69859 -42.08530 -37.71473 -37.02552 -33.61390 -31.78109 -29.77959 -29.40459 -27.47774 -27.02926 -23.92711 -22.88731 -22.41596 -20.17767 -18.72900 -17.90172 -17.80566 -16.88547 -16.51139 -16.45534 -15.89762 -15.15007 -15.12768 -14.63581 -14.42811 -13.91532 -13.63903 -13.58818 -13.39648 -12.94111 -12.87546 -12.55968 -12.44353 -12.11097 -12.04432 -11.99603 -11.61855 -11.14577 -10.53227 -10.41993 -10.29261 -8.97794 -8.36257 -7.93900 -6.07825 0.14696 0.53458 1.47496 1.49426 1.56200 1.99508 2.37505 2.50701 2.85867 3.31302 3.44163 3.81429 4.06000 4.26574 4.37768 4.52759 4.77259 4.85747 4.89739 5.01029 5.06053 5.17362 5.18932 5.31327 5.34018 5.41450 5.49453 5.70377 5.71494 5.88741 6.03766 6.14840 6.18278 6.37519 6.58877 6.89833 6.99244 7.59308 9.07023 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034128 B = 0.006829 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.245902 B = 4099.405947 C = 4730.673221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.124 3.876 3 C -0.112 4.112 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.266 1.266 12 C -0.153 4.153 13 C 0.051 3.949 14 N -0.581 5.581 15 H 0.431 0.569 16 C 0.077 3.923 17 C -0.091 4.091 18 C -0.134 4.134 19 C 0.045 3.955 20 F -0.153 7.153 21 C -0.121 4.121 22 C -0.105 4.105 23 H 0.018 0.982 24 H 0.055 0.945 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.256 0.744 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -5.854 13.050 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 C -0.170 4.170 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.191 1.191 12 C -0.160 4.160 13 C -0.074 4.074 14 N -0.186 5.186 15 H 0.271 0.729 16 C -0.032 4.032 17 C -0.111 4.111 18 C -0.153 4.153 19 C 0.025 3.975 20 F -0.132 7.132 21 C -0.141 4.141 22 C -0.111 4.111 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.186 0.814 32 H 0.183 0.817 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.020 -5.836 12.918 14.734 hybrid contribution -0.030 -0.147 -1.183 1.192 sum 3.990 -5.983 11.736 13.764 Atomic orbital electron populations 1.21601 0.98163 0.98631 0.98503 1.16556 0.91428 0.91281 0.88433 1.21643 0.97668 0.98628 0.99079 1.21487 1.28231 1.14965 0.90936 0.91655 1.25591 0.95453 0.95567 1.01275 1.69995 1.38918 1.22593 1.23369 0.85759 0.78762 0.78651 0.79539 1.20611 1.21837 1.19081 1.20924 1.03685 0.98878 0.92472 1.21938 1.00957 0.98098 0.86439 1.41633 1.45917 1.27111 1.03956 0.72879 1.18561 0.98994 0.93124 0.92515 1.20160 1.01352 0.99939 0.89641 1.20975 0.98911 0.94320 1.01112 1.17499 0.99454 0.90116 0.90420 1.91422 1.77436 1.60203 1.84174 1.20519 1.01150 0.99292 0.93119 1.19159 1.01314 0.96750 0.93832 0.96278 0.92573 0.96332 0.96375 0.92324 0.96485 0.93412 0.80103 0.81438 0.81657 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.54 8.08 71.98 0.58 -4.96 16 2 C 0.12 6.06 0.69 -53.67 -0.04 6.02 16 3 C -0.11 -5.61 8.21 71.98 0.59 -5.02 16 4 C -0.52 -26.70 7.77 25.60 0.20 -26.50 16 5 H 0.07 3.16 5.67 -2.91 -0.02 3.14 16 6 C 0.02 1.05 5.13 84.66 0.43 1.48 16 7 N -0.91 -50.54 9.47 21.45 0.20 -50.34 16 8 Si 0.95 41.92 29.54 68.60 2.03 43.94 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 12 C -0.15 -6.50 4.84 -18.63 -0.09 -6.59 16 13 C 0.05 1.79 10.90 83.00 0.91 2.69 16 14 N -0.58 -15.78 6.07 -187.58 -1.14 -16.92 16 15 H 0.43 7.72 8.96 -92.71 -0.83 6.89 16 16 C 0.08 2.33 7.27 39.00 0.28 2.61 16 17 C -0.09 -2.10 10.06 22.35 0.22 -1.88 16 18 C -0.13 -3.29 9.99 22.34 0.22 -3.07 16 19 C 0.05 1.46 7.29 22.35 0.16 1.62 16 20 F -0.15 -4.96 17.26 44.97 0.78 -4.18 16 21 C -0.12 -4.56 9.07 22.51 0.20 -4.36 16 22 C -0.11 -4.04 6.02 -20.20 -0.12 -4.16 16 23 H 0.02 0.86 6.63 -2.39 -0.02 0.85 16 24 H 0.06 3.03 6.23 -2.39 -0.01 3.02 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 3.19 6.14 -2.39 -0.01 3.17 16 28 H 0.02 0.77 6.80 -2.39 -0.02 0.75 16 29 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.18 6.01 6.34 -2.91 -0.02 6.00 16 31 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.11 4.58 6.54 -2.91 -0.02 4.56 16 Total: -1.00 -61.52 273.00 5.74 -55.78 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.32 Total: 13.83 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 3.56 Total: -42.10 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.94 Total: -67.26 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -61.52 5.74 -55.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527393256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.667 kcal (2) G-P(sol) polarization free energy of solvation -61.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds