Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46818 * 2 1 4 4 C 1.50705 * 109.47245 * 240.00423 * 2 1 3 5 5 H 1.07997 * 120.00029 * 122.35046 * 4 2 1 6 6 C 1.37876 * 119.99772 * 302.35521 * 4 2 1 7 7 N 1.31509 * 120.00174 * 187.31702 * 6 4 2 8 8 Si 1.86807 * 119.99838 * 7.31631 * 6 4 2 9 9 H 1.48503 * 109.47105 * 85.75140 * 8 6 4 10 10 H 1.48504 * 109.47071 * 205.74927 * 8 6 4 11 11 H 1.48495 * 109.47128 * 325.74837 * 8 6 4 12 12 C 1.50692 * 109.47601 * 120.00081 * 2 1 3 13 13 C 1.34243 * 126.49549 * 120.02558 * 12 2 1 14 14 N 1.36804 * 109.93308 * 179.97438 * 13 12 2 15 15 H 0.96994 * 125.07409 * 179.97438 * 14 13 12 16 16 C 1.37783 * 109.85110 * 0.02562 * 14 13 12 17 17 C 1.40615 * 107.16341 * 359.74699 * 16 14 13 18 18 C 1.39667 * 119.94663 * 179.67321 * 17 16 14 19 19 C 1.36639 * 119.80059 * 0.59454 * 18 17 16 20 20 C 1.38797 * 120.55088 * 359.68143 * 19 18 17 21 21 C 1.37982 * 120.63373 * 0.02562 * 20 19 18 22 22 F 1.35096 * 120.13194 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47054 * 307.37193 * 1 2 3 24 24 H 1.09000 * 109.46712 * 187.37868 * 1 2 3 25 25 H 1.08993 * 109.47536 * 67.37769 * 1 2 3 26 26 H 1.08996 * 109.47136 * 60.00009 * 3 2 1 27 27 H 1.09000 * 109.47020 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46968 * 300.00018 * 3 2 1 29 29 H 0.97007 * 120.00170 * 180.02562 * 7 6 4 30 30 H 1.07995 * 125.03458 * 359.94220 * 13 12 2 31 31 H 1.07995 * 120.10059 * 180.28120 * 18 17 16 32 32 H 1.08006 * 119.72555 * 179.70064 * 19 18 17 33 33 H 1.08003 * 119.68442 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6842 -0.1972 -1.9220 6 6 1.6597 -2.0153 -1.4736 7 7 2.2085 -2.6821 -2.4654 8 14 0.3751 -2.8363 -0.3940 9 1 -0.9809 -2.5195 -0.9101 10 1 0.5803 -4.3070 -0.4117 11 1 0.5046 -2.3352 0.9978 12 6 2.0324 -0.7104 1.2304 13 6 2.8077 -1.8059 1.2591 14 7 3.0614 -2.1638 2.5549 15 1 3.5988 -2.9236 2.8283 16 6 2.4387 -1.2846 3.4137 17 6 1.7719 -0.3330 2.6217 18 6 1.0404 0.6901 3.2289 19 6 0.9859 0.7692 4.5919 20 6 1.6465 -0.1633 5.3797 21 6 2.3700 -1.1859 4.8012 22 9 3.0095 -2.0877 5.5777 23 1 -0.3633 0.6238 0.8167 24 1 -0.3633 -1.0192 0.1320 25 1 -0.3634 0.3953 -0.9485 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.9460 -3.6001 -2.6367 30 1 3.1762 -2.3277 0.3883 31 1 0.5236 1.4196 2.6230 32 1 0.4239 1.5638 5.0602 33 1 1.5937 -0.0877 6.4558 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527399370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = 19.841856 kcal Electronic energy + Delta-G solvation = -18212.922267 eV Core-core repulsion = 15346.923838 eV Total energy + Delta-G solvation = -2865.998428 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.61073 -40.82049 -36.64278 -35.66811 -31.94537 -30.29686 -28.97643 -28.08224 -26.45161 -24.96713 -22.41172 -21.59998 -20.98614 -18.66028 -17.82088 -16.59958 -15.89838 -15.54440 -15.48421 -15.14491 -14.54436 -14.33302 -13.70260 -13.32988 -12.87061 -12.82047 -12.37038 -12.16046 -11.82290 -11.37699 -11.30454 -11.26591 -11.13663 -10.76007 -10.24922 -10.18896 -10.00548 -9.30973 -9.01505 -8.69426 -8.54432 -7.84755 -6.87921 -6.15267 -4.15080 1.35480 1.85619 3.23161 3.40432 3.41329 3.49470 3.56013 4.16729 4.38101 4.55164 5.04014 5.14940 5.19880 5.52938 5.60973 5.74420 6.08921 6.13876 6.20116 6.29882 6.35569 6.45006 6.58670 6.63472 6.69554 6.78577 6.85540 6.87850 7.02351 7.30471 7.37890 7.43875 7.62591 7.88118 8.02791 8.49769 8.91343 9.48296 10.96130 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.009498 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.009576 B = 2947.420556 C = 3393.978542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.099 3.901 3 C -0.117 4.117 4 C -0.507 4.507 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.898 5.898 8 Si 0.866 3.134 9 H -0.286 1.286 10 H -0.307 1.307 11 H -0.238 1.238 12 C -0.120 4.120 13 C 0.059 3.941 14 N -0.595 5.595 15 H 0.412 0.588 16 C 0.056 3.944 17 C -0.077 4.077 18 C -0.073 4.073 19 C -0.138 4.138 20 C -0.146 4.146 21 C 0.076 3.924 22 F -0.152 7.152 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.264 0.736 30 H 0.185 0.815 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 4.047 12.205 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.097 3.903 3 C -0.174 4.174 4 C -0.545 4.545 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.697 3.303 9 H -0.214 1.214 10 H -0.236 1.236 11 H -0.162 1.162 12 C -0.126 4.126 13 C -0.065 4.065 14 N -0.197 5.197 15 H 0.248 0.752 16 C -0.053 4.053 17 C -0.083 4.083 18 C -0.091 4.091 19 C -0.158 4.158 20 C -0.166 4.166 21 C 0.055 3.945 22 F -0.131 7.131 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.202 0.798 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.939 3.729 12.106 12.702 hybrid contribution -0.371 -1.320 0.721 1.549 sum -1.310 2.409 12.827 13.117 Atomic orbital electron populations 1.22238 0.98199 0.99500 0.99959 1.17021 0.91107 0.92297 0.89864 1.21656 1.00310 0.96257 0.99180 1.20956 1.30378 0.97228 1.05910 0.90406 1.25032 0.95702 0.97100 0.94970 1.69931 1.42218 1.10853 1.30489 0.87495 0.82281 0.76697 0.83813 1.21382 1.23600 1.16182 1.21028 1.02058 0.97568 0.91994 1.22222 1.00828 0.98661 0.84813 1.41820 1.45978 1.26541 1.05390 0.75246 1.18236 1.01808 0.95437 0.89853 1.19280 0.99853 0.95617 0.93558 1.20419 0.97576 0.97022 0.94097 1.20332 1.02289 0.99878 0.93281 1.20620 1.00498 0.95385 1.00048 1.16695 1.01152 0.92152 0.84549 1.91417 1.80442 1.66382 1.74863 0.94741 0.94391 0.92673 0.94877 0.93597 0.93395 0.92651 0.79841 0.85605 0.85757 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 7.64 37.16 0.28 -2.72 16 2 C 0.10 2.17 0.70 -156.81 -0.11 2.06 16 3 C -0.12 -2.26 8.32 37.16 0.31 -1.96 16 4 C -0.51 -13.20 8.01 -34.44 -0.28 -13.47 16 5 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 6 C 0.07 1.98 4.19 -17.82 -0.07 1.91 16 7 N -0.90 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.87 21.17 21.88 -169.99 -3.72 17.45 16 9 H -0.29 -7.09 7.04 56.52 0.40 -6.69 16 10 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 11 H -0.24 -5.61 4.62 56.52 0.26 -5.35 16 12 C -0.12 -2.57 2.88 -102.71 -0.30 -2.86 16 13 C 0.06 1.22 8.30 -16.74 -0.14 1.09 16 14 N -0.59 -10.80 6.07 -10.61 -0.06 -10.87 16 15 H 0.41 6.14 8.96 -40.82 -0.37 5.77 16 16 C 0.06 1.03 7.26 -83.91 -0.61 0.43 16 17 C -0.08 -1.49 6.11 -105.14 -0.64 -2.13 16 18 C -0.07 -1.19 9.35 -39.63 -0.37 -1.56 16 19 C -0.14 -1.94 9.97 -39.95 -0.40 -2.34 16 20 C -0.15 -2.10 9.99 -39.47 -0.39 -2.50 16 21 C 0.08 1.28 7.32 -39.29 -0.29 0.99 16 22 F -0.15 -2.47 17.27 2.25 0.04 -2.43 16 23 H 0.03 0.63 7.05 -51.93 -0.37 0.26 16 24 H 0.04 0.85 2.77 -51.93 -0.14 0.71 16 25 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 26 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 30 H 0.18 4.07 6.18 -52.49 -0.32 3.74 16 31 H 0.13 1.88 6.46 -52.49 -0.34 1.54 16 32 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -29.11 263.07 -5.72 -34.83 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -3.70 Total: 5.25 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.01 Total: -23.06 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.71 Total: -36.00 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.72 Total: 17.45 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.11 -5.72 -34.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527399370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.671 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds