Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46818 * 2 1 4 4 C 1.50705 * 109.47245 * 240.00423 * 2 1 3 5 5 H 1.07997 * 120.00029 * 122.35046 * 4 2 1 6 6 C 1.37876 * 119.99772 * 302.35521 * 4 2 1 7 7 N 1.31509 * 120.00174 * 187.31702 * 6 4 2 8 8 Si 1.86807 * 119.99838 * 7.31631 * 6 4 2 9 9 H 1.48503 * 109.47105 * 85.75140 * 8 6 4 10 10 H 1.48504 * 109.47071 * 205.74927 * 8 6 4 11 11 H 1.48495 * 109.47128 * 325.74837 * 8 6 4 12 12 C 1.50692 * 109.47601 * 120.00081 * 2 1 3 13 13 C 1.34243 * 126.49549 * 120.02558 * 12 2 1 14 14 N 1.36804 * 109.93308 * 179.97438 * 13 12 2 15 15 H 0.96994 * 125.07409 * 179.97438 * 14 13 12 16 16 C 1.37783 * 109.85110 * 0.02562 * 14 13 12 17 17 C 1.40615 * 107.16341 * 359.74699 * 16 14 13 18 18 C 1.39667 * 119.94663 * 179.67321 * 17 16 14 19 19 C 1.36639 * 119.80059 * 0.59454 * 18 17 16 20 20 C 1.38797 * 120.55088 * 359.68143 * 19 18 17 21 21 C 1.37982 * 120.63373 * 0.02562 * 20 19 18 22 22 F 1.35096 * 120.13194 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47054 * 307.37193 * 1 2 3 24 24 H 1.09000 * 109.46712 * 187.37868 * 1 2 3 25 25 H 1.08993 * 109.47536 * 67.37769 * 1 2 3 26 26 H 1.08996 * 109.47136 * 60.00009 * 3 2 1 27 27 H 1.09000 * 109.47020 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46968 * 300.00018 * 3 2 1 29 29 H 0.97007 * 120.00170 * 180.02562 * 7 6 4 30 30 H 1.07995 * 125.03458 * 359.94220 * 13 12 2 31 31 H 1.07995 * 120.10059 * 180.28120 * 18 17 16 32 32 H 1.08006 * 119.72555 * 179.70064 * 19 18 17 33 33 H 1.08003 * 119.68442 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6842 -0.1972 -1.9220 6 6 1.6597 -2.0153 -1.4736 7 7 2.2085 -2.6821 -2.4654 8 14 0.3751 -2.8363 -0.3940 9 1 -0.9809 -2.5195 -0.9101 10 1 0.5803 -4.3070 -0.4117 11 1 0.5046 -2.3352 0.9978 12 6 2.0324 -0.7104 1.2304 13 6 2.8077 -1.8059 1.2591 14 7 3.0614 -2.1638 2.5549 15 1 3.5988 -2.9236 2.8283 16 6 2.4387 -1.2846 3.4137 17 6 1.7719 -0.3330 2.6217 18 6 1.0404 0.6901 3.2289 19 6 0.9859 0.7692 4.5919 20 6 1.6465 -0.1633 5.3797 21 6 2.3700 -1.1859 4.8012 22 9 3.0095 -2.0877 5.5777 23 1 -0.3633 0.6238 0.8167 24 1 -0.3633 -1.0192 0.1320 25 1 -0.3634 0.3953 -0.9485 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.9460 -3.6001 -2.6367 30 1 3.1762 -2.3277 0.3883 31 1 0.5236 1.4196 2.6230 32 1 0.4239 1.5638 5.0602 33 1 1.5937 -0.0877 6.4558 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527399370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = 1.826375 kcal Electronic energy + Delta-G solvation = -18213.703476 eV Core-core repulsion = 15346.923838 eV Total energy + Delta-G solvation = -2866.779638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83761 -42.22454 -38.00402 -37.26493 -33.96257 -31.66431 -30.27414 -29.49823 -28.08211 -26.93100 -23.69686 -22.91978 -22.58145 -20.26381 -19.39871 -17.96937 -17.55638 -16.99470 -16.82405 -16.70371 -16.02532 -15.52498 -15.19747 -15.00565 -14.77925 -14.34668 -13.87601 -13.83989 -13.26575 -12.96533 -12.73345 -12.56225 -12.42700 -12.37634 -12.02683 -11.94097 -11.82722 -11.09576 -10.85259 -10.59931 -10.10501 -9.17860 -8.33253 -8.27217 -6.28838 0.08092 0.62368 1.30680 1.40245 1.51279 1.86183 2.19718 2.34576 2.88925 3.07789 3.33726 3.83060 4.07422 4.13597 4.31585 4.47353 4.49269 4.69359 4.73738 4.77488 4.97204 5.03104 5.08002 5.15732 5.20492 5.28788 5.38339 5.52347 5.63752 5.67683 5.79923 5.96038 6.03330 6.26141 6.42752 6.65894 6.82076 7.37821 8.87431 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.009498 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.009576 B = 2947.420556 C = 3393.978542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.094 3.906 3 C -0.111 4.111 4 C -0.500 4.500 5 H 0.040 0.960 6 C 0.035 3.965 7 N -0.944 5.944 8 Si 0.922 3.078 9 H -0.289 1.289 10 H -0.320 1.320 11 H -0.221 1.221 12 C -0.136 4.136 13 C 0.039 3.961 14 N -0.591 5.591 15 H 0.422 0.578 16 C 0.041 3.959 17 C -0.099 4.099 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.128 4.128 21 C 0.058 3.942 22 F -0.153 7.153 23 H 0.068 0.932 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.262 0.738 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 5.842 15.672 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.093 3.907 3 C -0.169 4.169 4 C -0.538 4.538 5 H 0.058 0.942 6 C -0.162 4.162 7 N -0.585 5.585 8 Si 0.753 3.247 9 H -0.216 1.216 10 H -0.250 1.250 11 H -0.144 1.144 12 C -0.143 4.143 13 C -0.086 4.086 14 N -0.195 5.195 15 H 0.260 0.740 16 C -0.067 4.067 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.148 4.148 21 C 0.037 3.963 22 F -0.132 7.132 23 H 0.087 0.913 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.177 0.823 31 H 0.160 0.840 32 H 0.186 0.814 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.541 5.541 15.603 16.752 hybrid contribution 0.183 -1.768 -0.272 1.798 sum -2.357 3.774 15.331 15.963 Atomic orbital electron populations 1.22181 0.97056 0.99250 1.01289 1.17013 0.92004 0.93356 0.88374 1.21593 0.99605 0.94919 1.00747 1.21212 1.28792 0.97131 1.06684 0.94197 1.25551 0.97223 0.97681 0.95791 1.70055 1.44336 1.11225 1.32842 0.86623 0.79805 0.74870 0.83422 1.21631 1.25044 1.14384 1.20894 1.02696 0.97807 0.92874 1.21877 1.02020 0.99280 0.85401 1.41704 1.46234 1.27086 1.04499 0.74012 1.18552 1.01970 0.95390 0.90794 1.19364 1.01542 0.97260 0.92242 1.20726 0.97259 0.96495 0.95493 1.20822 1.00929 1.00069 0.92246 1.21145 0.98019 0.93612 1.02005 1.16957 1.02275 0.93236 0.83867 1.91416 1.80593 1.66575 1.74588 0.91279 0.95842 0.92910 0.91840 0.94741 0.93192 0.92888 0.82297 0.83974 0.81427 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 7.64 71.98 0.55 -5.12 16 2 C 0.09 4.09 0.70 -53.67 -0.04 4.05 16 3 C -0.11 -4.17 8.32 71.98 0.60 -3.57 16 4 C -0.50 -26.90 8.01 25.60 0.20 -26.69 16 5 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 6 C 0.03 1.95 4.19 84.66 0.35 2.30 16 7 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 8 Si 0.92 44.95 21.88 68.60 1.50 46.45 16 9 H -0.29 -13.99 7.04 99.48 0.70 -13.29 16 10 H -0.32 -16.13 7.11 99.48 0.71 -15.43 16 11 H -0.22 -10.13 4.62 99.48 0.46 -9.67 16 12 C -0.14 -5.69 2.88 -18.63 -0.05 -5.74 16 13 C 0.04 1.66 8.30 83.01 0.69 2.35 16 14 N -0.59 -21.29 6.07 -187.49 -1.14 -22.42 16 15 H 0.42 12.62 8.96 -92.71 -0.83 11.78 16 16 C 0.04 1.46 7.26 39.04 0.28 1.74 16 17 C -0.10 -3.55 6.11 -20.20 -0.12 -3.67 16 18 C -0.08 -2.28 9.35 22.24 0.21 -2.08 16 19 C -0.12 -2.66 9.97 22.03 0.22 -2.44 16 20 C -0.13 -3.01 9.99 22.34 0.22 -2.78 16 21 C 0.06 1.76 7.32 22.46 0.16 1.93 16 22 F -0.15 -4.55 17.27 44.97 0.78 -3.77 16 23 H 0.07 2.27 7.05 -2.39 -0.02 2.25 16 24 H 0.02 1.00 2.77 -2.39 -0.01 1.00 16 25 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 26 H 0.06 1.97 6.81 -2.39 -0.02 1.95 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 30 H 0.16 7.45 6.18 -2.91 -0.02 7.43 16 31 H 0.14 3.46 6.46 -2.91 -0.02 3.44 16 32 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -64.70 263.07 4.78 -59.92 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.06 Total: 16.34 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.28 Total: -39.74 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -0.84 Total: -79.20 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.50 Total: 46.45 kcal Total: -64.70 4.78 -59.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527399370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.749 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds