Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 13 13 C 1.34207 * 126.49626 * 119.68620 * 12 2 1 14 14 N 1.36906 * 109.92046 * 179.83566 * 13 12 2 15 15 H 0.96998 * 125.06850 * 180.22118 * 14 13 12 16 16 C 1.37694 * 109.86758 * 0.44746 * 14 13 12 17 17 C 1.39121 * 133.47945 * 179.74183 * 16 14 13 18 18 C 1.37940 * 119.76115 * 179.97438 * 17 16 14 19 19 F 1.35104 * 119.69652 * 179.97438 * 18 17 16 20 20 C 1.39029 * 120.61351 * 0.02562 * 18 17 16 21 21 C 1.36615 * 120.49987 * 0.02562 * 20 18 17 22 22 C 1.39628 * 119.79656 * 359.95941 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.07997 * 125.04570 * 359.97438 * 13 12 2 31 31 H 1.07998 * 120.12107 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.75487 * 180.02562 * 20 18 17 33 33 H 1.08002 * 120.09940 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 6 2.0324 -0.7104 1.2304 13 6 2.8022 -1.8093 1.2592 14 7 3.0604 -2.1642 2.5560 15 1 3.5981 -2.9237 2.8295 16 6 2.4387 -1.2851 3.4143 17 6 2.3698 -1.1877 4.8004 18 6 1.6475 -0.1653 5.3799 19 9 1.5811 -0.0723 6.7261 20 6 0.9862 0.7696 4.5916 21 6 1.0410 0.6903 3.2288 22 6 1.7669 -0.3366 2.6222 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 0.7093 1.1618 -3.4844 30 1 3.1662 -2.3345 0.3885 31 1 2.8808 -1.9093 5.4205 32 1 0.4250 1.5646 5.0599 33 1 0.5252 1.4203 2.6226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527401099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = 5.272761 kcal Electronic energy + Delta-G solvation = -17671.717732 eV Core-core repulsion = 14805.087541 eV Total energy + Delta-G solvation = -2866.630192 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.59590 -40.76011 -36.32681 -35.43217 -31.83070 -30.22201 -28.81793 -27.73066 -25.52649 -25.04744 -22.72005 -21.47054 -20.85324 -18.59398 -17.51394 -16.73014 -15.64649 -15.47669 -15.32310 -14.85065 -14.64378 -13.80023 -13.61118 -13.31098 -12.95024 -12.49665 -12.36870 -11.74192 -11.44534 -11.06342 -11.04812 -10.94239 -10.88342 -10.58246 -10.52910 -10.09030 -9.73171 -9.40697 -8.96394 -8.62644 -8.34821 -7.76478 -6.97471 -5.97007 -4.06867 1.40135 1.85942 3.28078 3.35779 3.36791 3.40734 3.53184 4.21223 4.40051 4.70132 5.03532 5.29419 5.30328 5.50299 5.63471 5.77058 6.02248 6.32672 6.40231 6.47266 6.57234 6.82093 6.87399 6.98610 7.04072 7.11459 7.21276 7.38853 7.54225 7.61449 7.69337 7.77632 8.05706 8.11243 8.26284 8.49028 8.91769 9.58338 11.04378 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.006200 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.292712 B = 4515.050274 C = 4986.583752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.127 3.873 3 C -0.125 4.125 4 C -0.505 4.505 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.101 4.101 13 C 0.028 3.972 14 N -0.601 5.601 15 H 0.408 0.592 16 C 0.112 3.888 17 C -0.175 4.175 18 C 0.104 3.896 19 F -0.148 7.148 20 C -0.195 4.195 21 C -0.029 4.029 22 C -0.110 4.110 23 H 0.010 0.990 24 H 0.023 0.977 25 H 0.084 0.916 26 H 0.010 0.990 27 H 0.024 0.976 28 H 0.084 0.916 29 H 0.259 0.741 30 H 0.175 0.825 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -2.765 10.044 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.126 3.874 3 C -0.182 4.182 4 C -0.543 4.543 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.106 4.106 13 C -0.094 4.094 14 N -0.204 5.204 15 H 0.244 0.756 16 C 0.003 3.997 17 C -0.197 4.197 18 C 0.084 3.916 19 F -0.127 7.127 20 C -0.215 4.215 21 C -0.047 4.047 22 C -0.116 4.116 23 H 0.029 0.971 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.191 0.809 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.948 -2.753 9.901 10.460 hybrid contribution 0.649 -0.936 -0.443 1.222 sum 2.596 -3.689 9.459 10.479 Atomic orbital electron populations 1.21784 0.97313 0.98983 1.00156 1.16678 0.92042 0.91548 0.87109 1.21780 0.98375 0.97915 1.00154 1.21107 1.31271 1.11864 0.90104 0.92566 1.24883 0.95008 0.94933 0.98718 1.69809 1.36737 1.22681 1.23097 0.86654 0.79111 0.79452 0.83081 1.20821 1.21296 1.20101 1.21178 1.00252 0.96507 0.92693 1.21938 1.03133 0.99601 0.84700 1.41796 1.46445 1.26740 1.05393 0.75598 1.17837 0.98110 0.93199 0.90544 1.19616 1.06685 1.01552 0.91861 1.17095 1.00912 0.97294 0.76270 1.91437 1.95191 1.96078 1.30012 1.20489 1.05648 1.01411 0.93949 1.20282 0.95372 0.96078 0.92992 1.19418 1.01476 0.96710 0.94006 0.97102 0.95734 0.89763 0.97106 0.95727 0.89762 0.93042 0.80850 0.85883 0.85449 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.17 37.16 0.30 -2.62 16 2 C 0.13 2.98 0.69 -156.81 -0.11 2.87 16 3 C -0.12 -2.92 8.17 37.16 0.30 -2.61 16 4 C -0.51 -12.76 7.79 -34.44 -0.27 -13.03 16 5 H 0.06 1.37 5.65 -52.49 -0.30 1.07 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.48 9.35 55.43 0.52 -22.96 16 8 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C -0.10 -2.11 4.84 -102.70 -0.50 -2.61 16 13 C 0.03 0.52 10.91 -16.71 -0.18 0.34 16 14 N -0.60 -9.33 6.07 -10.64 -0.06 -9.40 16 15 H 0.41 4.73 8.96 -40.82 -0.37 4.36 16 16 C 0.11 1.93 7.28 -83.99 -0.61 1.31 16 17 C -0.18 -2.69 10.05 -39.36 -0.40 -3.09 16 18 C 0.10 1.64 7.28 -39.40 -0.29 1.35 16 19 F -0.15 -2.25 17.25 2.25 0.04 -2.21 16 20 C -0.19 -3.04 9.95 -39.87 -0.40 -3.43 16 21 C -0.03 -0.50 9.15 -39.65 -0.36 -0.87 16 22 C -0.11 -2.13 6.08 -105.12 -0.64 -2.76 16 23 H 0.01 0.22 6.80 -51.93 -0.35 -0.14 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 26 H 0.01 0.22 6.81 -51.93 -0.35 -0.14 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.17 3.05 6.33 -52.49 -0.33 2.72 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.13 2.24 6.47 -52.49 -0.34 1.91 16 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -27.23 272.91 -7.15 -34.37 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.50 Total: 4.48 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.23 Total: -23.55 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.45 Total: -32.36 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.23 -7.15 -34.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527401099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.645 kcal (2) G-P(sol) polarization free energy of solvation -27.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds