Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 13 13 C 1.34207 * 126.49626 * 119.68620 * 12 2 1 14 14 N 1.36906 * 109.92046 * 179.83566 * 13 12 2 15 15 H 0.96998 * 125.06850 * 180.22118 * 14 13 12 16 16 C 1.37694 * 109.86758 * 0.44746 * 14 13 12 17 17 C 1.39121 * 133.47945 * 179.74183 * 16 14 13 18 18 C 1.37940 * 119.76115 * 179.97438 * 17 16 14 19 19 F 1.35104 * 119.69652 * 179.97438 * 18 17 16 20 20 C 1.39029 * 120.61351 * 0.02562 * 18 17 16 21 21 C 1.36615 * 120.49987 * 0.02562 * 20 18 17 22 22 C 1.39628 * 119.79656 * 359.95941 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.07997 * 125.04570 * 359.97438 * 13 12 2 31 31 H 1.07998 * 120.12107 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.75487 * 180.02562 * 20 18 17 33 33 H 1.08002 * 120.09940 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 6 2.0324 -0.7104 1.2304 13 6 2.8022 -1.8093 1.2592 14 7 3.0604 -2.1642 2.5560 15 1 3.5981 -2.9237 2.8295 16 6 2.4387 -1.2851 3.4143 17 6 2.3698 -1.1877 4.8004 18 6 1.6475 -0.1653 5.3799 19 9 1.5811 -0.0723 6.7261 20 6 0.9862 0.7696 4.5916 21 6 1.0410 0.6903 3.2288 22 6 1.7669 -0.3366 2.6222 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 0.7093 1.1618 -3.4844 30 1 3.1662 -2.3345 0.3885 31 1 2.8808 -1.9093 5.4205 32 1 0.4250 1.5646 5.0599 33 1 0.5252 1.4203 2.6226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527401099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = -7.993400 kcal Electronic energy + Delta-G solvation = -17672.292996 eV Core-core repulsion = 14805.087541 eV Total energy + Delta-G solvation = -2867.205455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.79518 -42.10724 -37.72372 -37.08941 -33.57239 -31.69654 -30.15959 -29.18445 -27.42086 -26.95165 -24.00319 -22.88787 -22.38761 -20.11567 -18.93416 -18.11681 -17.31722 -16.87188 -16.53001 -16.45251 -16.09360 -15.14264 -15.10130 -14.71911 -14.50468 -14.17359 -13.73654 -13.55439 -13.10404 -12.90653 -12.73354 -12.45278 -12.40038 -12.18287 -12.10540 -11.96767 -11.59184 -11.14902 -10.47905 -10.37763 -10.27404 -9.06248 -8.37075 -7.91292 -6.06137 0.11038 0.58306 1.47820 1.50539 1.57299 1.96909 2.27289 2.51866 2.87583 3.33608 3.47541 3.81961 4.09338 4.18747 4.34517 4.49338 4.71298 4.87257 4.88606 5.06070 5.10369 5.16068 5.25505 5.26975 5.36825 5.52242 5.53920 5.72955 5.76363 5.88889 6.06091 6.17330 6.21354 6.41751 6.61270 6.85600 7.00694 7.61257 9.08513 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.006200 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.292712 B = 4515.050274 C = 4986.583752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.123 3.877 3 C -0.114 4.114 4 C -0.516 4.516 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.908 5.908 8 Si 0.944 3.056 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.268 1.268 12 C -0.142 4.142 13 C 0.040 3.960 14 N -0.583 5.583 15 H 0.429 0.571 16 C 0.106 3.894 17 C -0.165 4.165 18 C 0.101 3.899 19 F -0.143 7.143 20 C -0.185 4.185 21 C -0.047 4.047 22 C -0.134 4.134 23 H 0.024 0.976 24 H 0.015 0.985 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.256 0.744 30 H 0.181 0.819 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -3.898 11.660 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 C -0.172 4.172 4 C -0.554 4.554 5 H 0.080 0.920 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.193 1.193 12 C -0.148 4.148 13 C -0.084 4.084 14 N -0.187 5.187 15 H 0.269 0.731 16 C -0.003 4.003 17 C -0.187 4.187 18 C 0.081 3.919 19 F -0.122 7.122 20 C -0.205 4.205 21 C -0.065 4.065 22 C -0.140 4.140 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.197 0.803 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.784 -3.913 11.549 12.507 hybrid contribution 0.388 -0.578 -0.842 1.092 sum 3.172 -4.490 10.707 12.036 Atomic orbital electron populations 1.21636 0.97903 0.98114 0.99541 1.16579 0.91659 0.91439 0.88087 1.21632 0.97602 0.98410 0.99539 1.21498 1.30919 1.12014 0.90980 0.91972 1.25544 0.95452 0.95639 1.01195 1.69952 1.37761 1.23798 1.23231 0.85774 0.78806 0.78269 0.80006 1.20813 1.21735 1.19264 1.20966 1.02845 0.98251 0.92694 1.21944 1.01834 0.98650 0.86016 1.41641 1.46005 1.26980 1.04106 0.73150 1.17962 0.98146 0.93036 0.91157 1.19866 1.05844 1.01669 0.91295 1.17188 1.00859 0.97370 0.76532 1.91457 1.95137 1.96043 1.29542 1.20711 1.04884 1.01692 0.93218 1.20320 0.96141 0.96210 0.93845 1.19556 1.02776 0.98116 0.93533 0.95700 0.96577 0.92221 0.95705 0.96561 0.92219 0.93415 0.80253 0.82914 0.83132 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 8.17 71.98 0.59 -4.86 16 2 C 0.12 5.84 0.69 -53.67 -0.04 5.80 16 3 C -0.11 -5.44 8.17 71.98 0.59 -4.86 16 4 C -0.52 -26.17 7.79 25.60 0.20 -25.97 16 5 H 0.06 2.99 5.65 -2.91 -0.02 2.97 16 6 C 0.02 1.05 5.15 84.65 0.44 1.49 16 7 N -0.91 -49.30 9.35 21.45 0.20 -49.10 16 8 Si 0.94 41.53 29.54 68.60 2.03 43.56 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 C -0.14 -5.87 4.84 -18.62 -0.09 -5.96 16 13 C 0.04 1.41 10.91 82.98 0.91 2.31 16 14 N -0.58 -16.60 6.07 -187.59 -1.14 -17.74 16 15 H 0.43 8.52 8.96 -92.71 -0.83 7.69 16 16 C 0.11 3.38 7.28 39.02 0.28 3.66 16 17 C -0.17 -4.51 10.05 22.41 0.23 -4.29 16 18 C 0.10 2.85 7.28 22.39 0.16 3.01 16 19 F -0.14 -3.85 17.25 44.97 0.78 -3.08 16 20 C -0.19 -5.34 9.95 22.08 0.22 -5.12 16 21 C -0.05 -1.58 9.15 22.23 0.20 -1.37 16 22 C -0.13 -5.01 6.08 -20.19 -0.12 -5.13 16 23 H 0.02 1.06 6.80 -2.39 -0.02 1.04 16 24 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 3.12 6.07 -2.38 -0.01 3.10 16 26 H 0.02 1.06 6.81 -2.39 -0.02 1.04 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 29 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.18 6.06 6.33 -2.91 -0.02 6.04 16 31 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 33 H 0.13 4.32 6.47 -2.91 -0.02 4.30 16 Total: -1.00 -57.65 272.91 5.74 -51.91 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.32 Total: 15.73 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.56 Total: -41.27 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -0.94 Total: -66.84 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -57.65 5.74 -51.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527401099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.916 kcal (2) G-P(sol) polarization free energy of solvation -57.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds