Wall clock time and date at job start Mon Mar 30 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36042 * 116.99898 * 2 1 4 4 C 1.36606 * 119.78402 * 0.02784 * 3 2 1 5 5 C 1.40624 * 119.84096 * 180.02562 * 4 3 2 6 6 C 1.40808 * 132.94114 * 179.97438 * 5 4 3 7 7 C 1.39185 * 107.56101 * 179.97438 * 6 5 4 8 8 C 1.39858 * 125.68865 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00266 * 0.02562 * 8 7 6 10 10 C 1.40115 * 119.99592 * 180.02562 * 8 7 6 11 11 N 1.30804 * 120.00366 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00216 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47188 * 59.99694 * 12 10 8 14 14 H 1.48492 * 109.47421 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46775 * 300.00220 * 12 10 8 16 16 N 1.38365 * 108.61278 * 0.02562 * 7 6 5 17 17 H 0.97005 * 125.63280 * 179.97438 * 16 7 6 18 18 C 1.38250 * 108.73208 * 359.97438 * 16 7 6 19 19 C 1.38764 * 132.67407 * 179.97438 * 18 16 7 20 20 C 1.38489 * 119.91007 * 179.97438 * 19 18 16 21 21 O 1.35834 * 119.73694 * 180.02562 * 20 19 18 22 22 C 1.42901 * 117.00071 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.46803 * 299.99658 * 1 2 3 24 24 H 1.08995 * 109.46977 * 59.99730 * 1 2 3 25 25 H 1.08998 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.07690 * 0.02562 * 4 3 2 27 27 H 1.08001 * 126.22084 * 0.21413 * 6 5 4 28 28 H 0.97000 * 120.00298 * 180.02562 * 11 10 8 29 29 H 1.08000 * 120.04519 * 0.02562 * 19 18 16 30 30 H 1.08996 * 109.46864 * 59.99927 * 22 21 20 31 31 H 1.09002 * 109.46790 * 179.97438 * 22 21 20 32 32 H 1.08993 * 109.47060 * 299.99757 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.2983 2.3550 0.0006 5 6 1.9354 3.6086 0.0000 6 6 1.4512 4.9308 -0.0001 7 6 2.5527 5.7815 -0.0001 8 6 2.5042 7.1793 0.0003 9 1 1.5508 7.6865 0.0011 10 6 3.6926 7.9215 -0.0004 11 7 4.8474 7.3071 -0.0018 12 14 3.6280 9.7884 0.0009 13 1 2.9123 10.2581 1.2143 14 1 5.0100 10.3316 -0.0007 15 1 2.9101 10.2595 -1.2106 16 7 3.7038 5.0136 -0.0006 17 1 4.6114 5.3558 -0.0011 18 6 3.3465 3.6781 -0.0003 19 6 4.0889 2.5058 -0.0011 20 6 3.4443 1.2801 0.0001 21 8 4.1746 0.1348 -0.0001 22 6 5.5970 0.2722 -0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2199 2.2958 0.0014 27 1 0.4135 5.2304 0.0035 28 1 5.6702 7.8210 -0.0019 29 1 5.1681 2.5492 -0.0017 30 1 5.9096 0.8188 0.8887 31 1 6.0574 -0.7157 -0.0006 32 1 5.9087 0.8184 -0.8912 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527408286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:21 Heat of formation + Delta-G solvation = -51.958740 kcal Electronic energy + Delta-G solvation = -17428.587508 eV Core-core repulsion = 14547.102783 eV Total energy + Delta-G solvation = -2881.484725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78565 -40.16800 -39.18469 -36.37203 -34.71159 -32.31461 -30.52156 -29.53985 -28.48430 -27.92362 -26.06408 -22.81688 -22.36246 -21.20584 -19.72137 -18.95389 -18.33509 -17.40787 -16.82422 -16.72792 -16.08230 -15.99360 -15.67935 -15.22287 -14.72255 -14.47104 -14.04931 -13.83666 -13.45663 -13.14444 -12.90467 -12.79989 -12.67300 -12.60598 -12.10825 -11.94987 -11.91952 -11.67543 -11.45531 -10.74986 -10.23960 -8.95165 -8.52162 -8.31572 -6.38303 0.36750 1.01798 1.36770 1.39621 1.53306 2.07700 2.14732 2.53804 2.59121 2.99225 3.10369 3.31970 3.97597 4.36760 4.41222 4.44569 4.49198 4.56278 4.63211 4.69281 4.74793 4.77431 4.80657 5.06112 5.13067 5.30444 5.43237 5.65110 5.77785 5.95006 6.03325 6.34819 6.54828 6.61502 6.88077 6.98255 7.54010 8.11729 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033936 B = 0.005914 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.885540 B = 4733.724959 C = 5538.165655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.331 6.331 3 C 0.083 3.917 4 C -0.195 4.195 5 C -0.057 4.057 6 C -0.406 4.406 7 C 0.263 3.737 8 C -0.471 4.471 9 H 0.104 0.896 10 C 0.032 3.968 11 N -0.852 5.852 12 Si 1.012 2.988 13 H -0.257 1.257 14 H -0.266 1.266 15 H -0.257 1.257 16 N -0.592 5.592 17 H 0.421 0.579 18 C 0.018 3.982 19 C -0.172 4.172 20 C 0.050 3.950 21 O -0.327 6.327 22 C 0.022 3.978 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.118 0.882 28 H 0.303 0.697 29 H 0.136 0.864 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 -5.478 0.006 5.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C 0.037 3.963 4 C -0.215 4.215 5 C -0.063 4.063 6 C -0.428 4.428 7 C 0.151 3.849 8 C -0.504 4.504 9 H 0.122 0.878 10 C -0.181 4.181 11 N -0.482 5.482 12 Si 0.831 3.169 13 H -0.181 1.181 14 H -0.190 1.190 15 H -0.181 1.181 16 N -0.208 5.208 17 H 0.270 0.730 18 C -0.088 4.088 19 C -0.194 4.194 20 C 0.004 3.996 21 O -0.241 6.241 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.141 0.859 26 H 0.156 0.844 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.154 0.846 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.619 -5.808 0.005 5.841 hybrid contribution 0.420 1.203 0.001 1.274 sum 1.039 -4.605 0.007 4.721 Atomic orbital electron populations 1.23220 0.77472 1.04999 1.01543 1.86046 1.22515 1.25967 1.90042 1.17580 0.89005 0.84834 1.04838 1.20140 0.99405 0.89586 1.12327 1.18114 0.92307 0.93645 1.02188 1.20565 0.96669 0.90611 1.34990 1.18480 0.84083 0.91818 0.90527 1.19363 0.95761 0.89245 1.45997 0.87784 1.27081 0.93295 1.07944 0.89819 1.68764 1.00120 1.41253 1.38068 0.84767 0.78806 0.73038 0.80300 1.18117 1.18978 1.18128 1.43129 1.09765 1.02441 1.65488 0.73035 1.18431 0.94302 0.85767 1.10279 1.19768 0.99066 0.88765 1.11789 1.17648 0.88205 0.84963 1.08753 1.86002 1.20014 1.27857 1.90271 1.23201 0.77818 1.04906 1.01301 0.92681 0.92688 0.85900 0.84381 0.86417 0.88505 0.84649 0.92902 0.85870 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.80 113.37 1.11 1.70 16 2 O -0.33 -12.48 10.27 -79.87 -0.82 -13.30 16 3 C 0.08 3.57 6.66 22.30 0.15 3.72 16 4 C -0.20 -8.64 9.06 22.47 0.20 -8.44 16 5 C -0.06 -2.93 6.13 -21.32 -0.13 -3.06 16 6 C -0.41 -21.54 10.87 23.13 0.25 -21.29 16 7 C 0.26 14.31 6.67 38.73 0.26 14.57 16 8 C -0.47 -24.09 9.31 23.12 0.22 -23.88 16 9 H 0.10 5.01 7.85 -2.91 -0.02 4.99 16 10 C 0.03 1.47 5.50 85.30 0.47 1.94 16 11 N -0.85 -40.07 10.61 21.86 0.23 -39.84 16 12 Si 1.01 34.77 29.56 68.60 2.03 36.80 16 13 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 14 H -0.27 -8.57 7.11 99.48 0.71 -7.87 16 15 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 16 N -0.59 -31.10 5.85 -180.04 -1.05 -32.15 16 17 H 0.42 21.52 6.18 -92.70 -0.57 20.95 16 18 C 0.02 0.91 7.23 39.00 0.28 1.20 16 19 C -0.17 -7.58 9.04 22.46 0.20 -7.37 16 20 C 0.05 2.13 6.71 22.74 0.15 2.28 16 21 O -0.33 -12.37 10.26 -77.53 -0.80 -13.16 16 22 C 0.02 0.61 9.80 113.37 1.11 1.72 16 23 H 0.05 1.40 7.64 -2.39 -0.02 1.39 16 24 H 0.05 1.40 7.64 -2.39 -0.02 1.38 16 25 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.14 5.31 6.21 -2.91 -0.02 5.30 16 27 H 0.12 5.86 8.06 -2.91 -0.02 5.84 16 28 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 29 H 0.14 5.20 6.25 -2.91 -0.02 5.18 16 30 H 0.05 1.37 7.64 -2.39 -0.02 1.36 16 31 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.05 1.38 7.64 -2.39 -0.02 1.36 16 Total: -1.00 -62.27 274.35 4.45 -57.82 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: 0.58 Total: 40.75 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.28 Total: -36.91 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -0.82 Total: -71.99 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.62 Total: -26.47 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -62.27 4.45 -57.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527408286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.860 kcal (2) G-P(sol) polarization free energy of solvation -62.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds