Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35771 * 117.00140 * 2 1 4 4 C 1.38743 * 119.67792 * 180.02562 * 3 2 1 5 5 C 1.38632 * 120.12043 * 179.74481 * 4 3 2 6 6 N 1.38203 * 132.62238 * 179.97438 * 5 4 3 7 7 H 0.97005 * 125.63962 * 0.02562 * 6 5 4 8 8 C 1.38392 * 108.72563 * 179.97438 * 6 5 4 9 9 C 1.39844 * 125.71098 * 180.02562 * 8 6 5 10 10 H 1.08000 * 120.00083 * 162.62273 * 9 8 6 11 11 C 1.40048 * 120.00066 * 342.62809 * 9 8 6 12 12 N 1.30851 * 120.00429 * 165.80636 * 11 9 8 13 13 Si 1.86807 * 119.99863 * 345.81020 * 11 9 8 14 14 H 1.48500 * 109.47253 * 87.66798 * 13 11 9 15 15 H 1.48497 * 109.47003 * 207.67196 * 13 11 9 16 16 H 1.48503 * 109.46871 * 327.66663 * 13 11 9 17 17 C 1.39226 * 108.58308 * 0.02562 * 8 6 5 18 18 C 1.40673 * 107.55548 * 359.97438 * 17 8 6 19 19 C 1.41099 * 132.96458 * 179.97438 * 18 17 8 20 20 O 1.35723 * 120.18142 * 0.03294 * 19 18 17 21 21 C 1.42901 * 117.00075 * 179.97438 * 20 19 18 22 22 C 1.37932 * 119.63885 * 180.02562 * 19 18 17 23 23 H 1.09003 * 109.46912 * 299.99952 * 1 2 3 24 24 H 1.08993 * 109.47192 * 59.99979 * 1 2 3 25 25 H 1.08996 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.93887 * 359.71527 * 4 3 2 27 27 H 0.96998 * 119.99895 * 180.02562 * 12 11 9 28 28 H 1.08001 * 126.21985 * 180.02562 * 17 8 6 29 29 H 1.09004 * 109.47520 * 59.99791 * 21 20 19 30 30 H 1.09000 * 109.47087 * 179.97438 * 21 20 19 31 31 H 1.08995 * 109.46976 * 299.99441 * 21 20 19 32 32 H 1.08000 * 119.84020 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.4314 1.2745 -0.0005 5 6 4.0703 2.5048 -0.0059 6 7 5.4041 2.8667 -0.0072 7 1 6.1560 2.2538 -0.0047 8 6 5.4897 4.2479 -0.0139 9 6 6.6736 4.9923 -0.0177 10 1 6.6555 6.0341 -0.3021 11 6 7.8826 4.3870 0.3472 12 7 9.0179 4.9821 0.0842 13 14 7.8745 2.7298 1.2094 14 1 7.8666 1.6445 0.1959 15 1 9.0877 2.6069 2.0569 16 1 6.6628 2.6208 2.0610 17 6 4.2000 4.7724 -0.0163 18 6 3.3017 3.6898 -0.0116 19 6 1.8931 3.6091 -0.0108 20 8 1.1447 4.7414 -0.0160 21 6 -0.2752 4.5806 -0.0154 22 6 1.2806 2.3732 -0.0049 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0135 0.3649 0.0037 27 1 9.8552 4.5626 0.3366 28 1 3.9371 5.8199 -0.0218 29 1 -0.5786 4.0331 0.8770 30 1 -0.7518 5.5609 -0.0194 31 1 -0.5783 4.0253 -0.9029 32 1 0.2026 2.3077 -0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527409515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = -22.520969 kcal Electronic energy + Delta-G solvation = -17558.698350 eV Core-core repulsion = 14678.490143 eV Total energy + Delta-G solvation = -2880.208208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35024 -38.69040 -38.13891 -34.61280 -33.24211 -30.68885 -29.15645 -28.45210 -27.32807 -26.54603 -24.52464 -21.28478 -20.95587 -19.49906 -18.30241 -17.92997 -16.29743 -15.99458 -15.46564 -15.17432 -15.02508 -14.74648 -14.39015 -14.09843 -13.39402 -13.31254 -12.55920 -12.35953 -12.16116 -11.78371 -11.38707 -11.28527 -11.21434 -11.15576 -10.87098 -10.57968 -10.37803 -10.14231 -9.66171 -9.26246 -8.31342 -7.40746 -7.15285 -6.55106 -4.43333 2.04108 2.41080 2.67318 2.87056 2.96171 3.58831 3.63883 3.68881 3.86603 4.38252 4.68927 5.07743 5.27391 5.34074 5.34204 5.41625 5.45523 5.60428 5.69190 5.79733 5.92796 6.12445 6.40574 6.61635 6.75211 6.88480 7.04392 7.25449 7.46056 7.65749 7.81908 7.95152 8.14060 8.15679 8.36851 8.66347 8.81969 9.89410 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.007214 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.950435 B = 3880.675563 C = 4751.461390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.107 3.893 4 C -0.178 4.178 5 C 0.100 3.900 6 N -0.620 5.620 7 H 0.395 0.605 8 C 0.256 3.744 9 C -0.436 4.436 10 H 0.113 0.887 11 C 0.082 3.918 12 N -0.799 5.799 13 Si 0.876 3.124 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.241 1.241 17 C -0.338 4.338 18 C -0.070 4.070 19 C 0.143 3.857 20 O -0.309 6.309 21 C 0.032 3.968 22 C -0.299 4.299 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.289 0.711 28 H 0.124 0.876 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 -6.146 0.749 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.062 3.938 4 C -0.200 4.200 5 C -0.005 4.005 6 N -0.235 5.235 7 H 0.237 0.763 8 C 0.151 3.849 9 C -0.469 4.469 10 H 0.130 0.870 11 C -0.138 4.138 12 N -0.424 5.424 13 Si 0.702 3.298 14 H -0.192 1.192 15 H -0.198 1.198 16 H -0.165 1.165 17 C -0.361 4.361 18 C -0.076 4.076 19 C 0.098 3.902 20 O -0.223 6.223 21 C -0.064 4.064 22 C -0.320 4.320 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.083 -6.106 0.754 12.677 hybrid contribution 0.061 -1.114 0.376 1.177 sum -11.023 -7.220 1.130 13.225 Atomic orbital electron populations 1.22837 0.79871 1.02586 1.00725 1.85916 1.20084 1.27649 1.90167 1.17752 0.90624 0.82809 1.02620 1.18663 0.91023 0.94973 1.15356 1.17362 0.83844 0.92927 1.06404 1.42891 1.04410 1.07417 1.68830 0.76337 1.18209 0.95132 0.78936 0.92668 1.18743 0.87993 0.99782 1.40338 0.86966 1.26055 0.95114 0.98929 0.93675 1.69612 0.98854 1.38909 1.34984 0.86933 0.80181 0.81445 0.81230 1.19157 1.19809 1.16453 1.20255 0.89178 0.96423 1.30214 1.17273 0.88810 0.94226 1.07243 1.18127 0.89036 0.84009 0.99025 1.86030 1.17397 1.29877 1.88956 1.22889 0.80298 1.02710 1.00529 1.20613 0.98767 0.91750 1.20881 0.93424 0.93413 0.89247 0.87034 0.90052 0.85824 0.93490 0.89050 0.93467 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 9.80 101.05 0.99 1.42 16 2 O -0.32 -5.56 10.48 -19.02 -0.20 -5.76 16 3 C 0.11 2.09 6.69 -39.02 -0.26 1.83 16 4 C -0.18 -3.76 9.99 -39.25 -0.39 -4.16 16 5 C 0.10 2.36 7.22 -83.70 -0.60 1.75 16 6 N -0.62 -14.83 4.78 -8.29 -0.04 -14.87 16 7 H 0.39 8.80 4.34 -40.82 -0.18 8.63 16 8 C 0.26 6.55 6.16 -83.93 -0.52 6.03 16 9 C -0.44 -11.42 9.83 -38.30 -0.38 -11.79 16 10 H 0.11 3.05 8.06 -52.49 -0.42 2.63 16 11 C 0.08 2.05 5.52 -17.29 -0.10 1.95 16 12 N -0.80 -20.21 13.93 55.55 0.77 -19.44 16 13 Si 0.88 18.65 24.70 -169.99 -4.20 14.45 16 14 H -0.26 -5.29 6.73 56.52 0.38 -4.91 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.24 -5.34 6.86 56.52 0.39 -4.95 16 17 C -0.34 -8.54 10.86 -38.30 -0.42 -8.96 16 18 C -0.07 -1.69 6.09 -106.75 -0.65 -2.34 16 19 C 0.14 3.05 6.74 -38.61 -0.26 2.79 16 20 O -0.31 -5.96 10.49 -18.87 -0.20 -6.16 16 21 C 0.03 0.42 9.81 101.05 0.99 1.41 16 22 C -0.30 -5.62 8.00 -39.32 -0.31 -5.93 16 23 H 0.05 0.53 7.65 -51.93 -0.40 0.14 16 24 H 0.05 0.53 7.63 -51.93 -0.40 0.14 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.12 3.03 8.06 -52.49 -0.42 2.60 16 29 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 32 H 0.12 1.83 4.45 -52.49 -0.23 1.59 16 LS Contribution 269.94 15.07 4.07 4.07 Total: -1.00 -28.79 269.94 -4.98 -33.77 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.28 Total: 9.94 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.91 Total: -16.00 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.73 Total: -34.31 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.40 Total: -11.92 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.20 Total: 14.45 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.79 -4.98 -33.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527409515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.247 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds