Wall clock time and date at job start Mon Mar 30 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35771 * 117.00140 * 2 1 4 4 C 1.38743 * 119.67792 * 180.02562 * 3 2 1 5 5 C 1.38632 * 120.12043 * 179.74481 * 4 3 2 6 6 N 1.38203 * 132.62238 * 179.97438 * 5 4 3 7 7 H 0.97005 * 125.63962 * 0.02562 * 6 5 4 8 8 C 1.38392 * 108.72563 * 179.97438 * 6 5 4 9 9 C 1.39844 * 125.71098 * 180.02562 * 8 6 5 10 10 H 1.08000 * 120.00083 * 162.62273 * 9 8 6 11 11 C 1.40048 * 120.00066 * 342.62809 * 9 8 6 12 12 N 1.30851 * 120.00429 * 165.80636 * 11 9 8 13 13 Si 1.86807 * 119.99863 * 345.81020 * 11 9 8 14 14 H 1.48500 * 109.47253 * 87.66798 * 13 11 9 15 15 H 1.48497 * 109.47003 * 207.67196 * 13 11 9 16 16 H 1.48503 * 109.46871 * 327.66663 * 13 11 9 17 17 C 1.39226 * 108.58308 * 0.02562 * 8 6 5 18 18 C 1.40673 * 107.55548 * 359.97438 * 17 8 6 19 19 C 1.41099 * 132.96458 * 179.97438 * 18 17 8 20 20 O 1.35723 * 120.18142 * 0.03294 * 19 18 17 21 21 C 1.42901 * 117.00075 * 179.97438 * 20 19 18 22 22 C 1.37932 * 119.63885 * 180.02562 * 19 18 17 23 23 H 1.09003 * 109.46912 * 299.99952 * 1 2 3 24 24 H 1.08993 * 109.47192 * 59.99979 * 1 2 3 25 25 H 1.08996 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.93887 * 359.71527 * 4 3 2 27 27 H 0.96998 * 119.99895 * 180.02562 * 12 11 9 28 28 H 1.08001 * 126.21985 * 180.02562 * 17 8 6 29 29 H 1.09004 * 109.47520 * 59.99791 * 21 20 19 30 30 H 1.09000 * 109.47087 * 179.97438 * 21 20 19 31 31 H 1.08995 * 109.46976 * 299.99441 * 21 20 19 32 32 H 1.08000 * 119.84020 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.4314 1.2745 -0.0005 5 6 4.0703 2.5048 -0.0059 6 7 5.4041 2.8667 -0.0072 7 1 6.1560 2.2538 -0.0047 8 6 5.4897 4.2479 -0.0139 9 6 6.6736 4.9923 -0.0177 10 1 6.6555 6.0341 -0.3021 11 6 7.8826 4.3870 0.3472 12 7 9.0179 4.9821 0.0842 13 14 7.8745 2.7298 1.2094 14 1 7.8666 1.6445 0.1959 15 1 9.0877 2.6069 2.0569 16 1 6.6628 2.6208 2.0610 17 6 4.2000 4.7724 -0.0163 18 6 3.3017 3.6898 -0.0116 19 6 1.8931 3.6091 -0.0108 20 8 1.1447 4.7414 -0.0160 21 6 -0.2752 4.5806 -0.0154 22 6 1.2806 2.3732 -0.0049 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0135 0.3649 0.0037 27 1 9.8552 4.5626 0.3366 28 1 3.9371 5.8199 -0.0218 29 1 -0.5786 4.0331 0.8770 30 1 -0.7518 5.5609 -0.0194 31 1 -0.5783 4.0253 -0.9029 32 1 0.2026 2.3077 -0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527409515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:03 Heat of formation + Delta-G solvation = -41.839820 kcal Electronic energy + Delta-G solvation = -17559.536078 eV Core-core repulsion = 14678.490143 eV Total energy + Delta-G solvation = -2881.045936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03216 -40.22147 -39.54097 -36.27637 -35.02591 -32.39403 -30.90262 -29.98579 -28.52031 -27.89829 -26.11114 -22.91667 -22.59327 -21.32530 -19.92030 -19.66295 -17.81850 -17.50240 -16.79000 -16.75458 -16.30097 -16.22639 -16.06151 -15.43542 -15.15060 -15.05459 -14.16175 -13.87579 -13.55936 -13.27272 -13.00320 -12.77130 -12.67447 -12.61296 -12.33944 -12.04642 -11.98129 -11.82152 -11.41875 -10.78430 -10.06038 -9.09975 -9.02022 -8.29872 -6.36955 0.38149 0.77203 0.99046 1.15152 1.27284 1.78556 1.92419 2.13911 2.54600 2.78583 2.98008 3.17070 4.04338 4.18707 4.23637 4.39971 4.44662 4.48019 4.50142 4.55013 4.72440 4.75452 4.77463 4.90589 5.00171 5.19803 5.43626 5.51021 5.56481 5.86800 6.08188 6.15879 6.43571 6.43900 6.71865 6.81953 6.98090 8.07859 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.007214 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.950435 B = 3880.675563 C = 4751.461390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.132 3.868 4 C -0.202 4.202 5 C 0.094 3.906 6 N -0.619 5.619 7 H 0.400 0.600 8 C 0.240 3.760 9 C -0.470 4.470 10 H 0.080 0.920 11 C 0.049 3.951 12 N -0.833 5.833 13 Si 0.930 3.070 14 H -0.241 1.241 15 H -0.253 1.253 16 H -0.256 1.256 17 C -0.358 4.358 18 C -0.113 4.113 19 C 0.150 3.850 20 O -0.333 6.333 21 C 0.018 3.982 22 C -0.295 4.295 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.299 0.701 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -8.924 1.129 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.086 3.914 4 C -0.225 4.225 5 C -0.012 4.012 6 N -0.235 5.235 7 H 0.243 0.757 8 C 0.134 3.866 9 C -0.503 4.503 10 H 0.098 0.902 11 C -0.168 4.168 12 N -0.459 5.459 13 Si 0.752 3.248 14 H -0.166 1.166 15 H -0.178 1.178 16 H -0.180 1.180 17 C -0.380 4.380 18 C -0.118 4.118 19 C 0.104 3.896 20 O -0.247 6.247 21 C -0.076 4.076 22 C -0.315 4.315 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.971 -8.891 1.121 16.598 hybrid contribution 0.533 -0.304 0.220 0.652 sum -13.438 -9.195 1.340 16.338 Atomic orbital electron populations 1.23300 0.76761 1.05358 1.01979 1.85938 1.23200 1.26105 1.89382 1.17919 0.90371 0.84092 0.99006 1.18887 0.92237 0.94586 1.16756 1.17686 0.83477 0.93790 1.06236 1.42813 1.05106 1.06724 1.68901 0.75724 1.18104 0.94823 0.79908 0.93767 1.18635 0.89607 0.98905 1.43124 0.90151 1.26690 0.94215 1.02213 0.93665 1.69637 0.99567 1.40691 1.36012 0.86093 0.80075 0.78000 0.80608 1.16635 1.17759 1.18034 1.20341 0.90056 0.96607 1.31037 1.17556 0.90609 0.93897 1.09747 1.18276 0.88404 0.85560 0.97324 1.86013 1.20555 1.29615 1.88509 1.23335 0.76907 1.05221 1.02127 1.20950 1.00785 0.90294 1.19470 0.92073 0.92063 0.86029 0.85501 0.88956 0.86811 0.91734 0.86389 0.91711 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.80 113.37 1.11 1.49 16 2 O -0.33 -9.91 10.48 -90.98 -0.95 -10.86 16 3 C 0.13 4.73 6.69 22.63 0.15 4.88 16 4 C -0.20 -8.19 9.99 22.48 0.22 -7.97 16 5 C 0.09 4.38 7.22 38.97 0.28 4.67 16 6 N -0.62 -30.11 4.78 -180.15 -0.86 -30.97 16 7 H 0.40 17.79 4.34 -92.70 -0.40 17.38 16 8 C 0.24 12.89 6.16 38.73 0.24 13.13 16 9 C -0.47 -26.28 9.83 23.10 0.23 -26.05 16 10 H 0.08 4.81 8.06 -2.91 -0.02 4.79 16 11 C 0.05 2.54 5.52 85.28 0.47 3.01 16 12 N -0.83 -43.64 13.93 21.85 0.30 -43.34 16 13 Si 0.93 38.67 24.70 68.60 1.69 40.36 16 14 H -0.24 -9.02 6.73 99.48 0.67 -8.35 16 15 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 16 H -0.26 -11.23 6.86 99.48 0.68 -10.55 16 17 C -0.36 -18.99 10.86 23.10 0.25 -18.74 16 18 C -0.11 -5.50 6.09 -21.24 -0.13 -5.63 16 19 C 0.15 6.16 6.74 22.90 0.15 6.31 16 20 O -0.33 -12.28 10.49 -90.45 -0.95 -13.23 16 21 C 0.02 0.41 9.81 113.37 1.11 1.52 16 22 C -0.29 -9.97 8.00 22.44 0.18 -9.79 16 23 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 24 H 0.06 1.01 7.63 -2.39 -0.02 0.99 16 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 27 H 0.30 13.91 8.30 -92.71 -0.77 13.14 16 28 H 0.11 6.00 8.06 -2.91 -0.02 5.98 16 29 H 0.06 1.24 7.66 -2.38 -0.02 1.23 16 30 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 32 H 0.16 3.99 4.45 -2.91 -0.01 3.98 16 Total: -1.00 -65.42 269.94 4.20 -61.22 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.69 Total: 29.99 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 4.27 Total: -33.18 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -0.56 Total: -74.30 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.90 Total: -24.09 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.69 Total: 40.36 kcal Total: -65.42 4.20 -61.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527409515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.382 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds