Wall clock time and date at job start Mon Mar 30 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.46760 * 2 1 4 4 C 1.35787 * 116.99446 * 180.02562 * 3 2 1 5 5 C 1.38209 * 119.42554 * 180.02562 * 4 3 2 6 6 C 1.40573 * 119.93084 * 180.02562 * 5 4 3 7 7 C 1.40831 * 120.55783 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00230 * 205.31567 * 7 6 5 9 9 C 1.40217 * 119.99707 * 25.31140 * 7 6 5 10 10 N 1.30664 * 120.00044 * 26.30829 * 9 7 6 11 11 Si 1.86805 * 119.99847 * 206.30533 * 9 7 6 12 12 H 1.48500 * 109.46766 * 180.02562 * 11 9 7 13 13 H 1.48495 * 109.46921 * 300.00203 * 11 9 7 14 14 H 1.48496 * 109.46926 * 60.00277 * 11 9 7 15 15 C 1.46598 * 118.88945 * 0.27408 * 6 5 4 16 16 C 1.43203 * 120.55244 * 179.70883 * 15 6 5 17 17 N 7.46891 * 163.53406 * 359.45678 * 2 1 3 18 18 C 1.40081 * 118.89569 * 359.42428 * 15 6 5 19 19 O 1.35695 * 120.01241 * 180.29002 * 18 15 6 20 20 C 1.42900 * 116.99626 * 180.31599 * 19 18 15 21 21 C 1.38570 * 119.96685 * 0.60639 * 18 15 6 22 22 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46570 * 300.00091 * 1 2 3 24 24 H 1.08996 * 109.47416 * 59.99454 * 1 2 3 25 25 H 1.09001 * 109.46386 * 240.00667 * 2 1 3 26 26 H 1.08995 * 109.46895 * 120.00557 * 2 1 3 27 27 H 1.07996 * 120.03403 * 0.04546 * 5 4 3 28 28 H 0.97003 * 120.00331 * 5.88677 * 10 9 7 29 29 H 1.09004 * 109.47301 * 299.99989 * 20 19 18 30 30 H 1.09003 * 109.47424 * 60.00119 * 20 19 18 31 31 H 1.08995 * 109.46987 * 180.02562 * 20 19 18 32 32 H 1.07997 * 119.41430 * 179.68401 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3525 1.5252 -0.0005 5 6 3.8680 2.8076 0.0000 6 6 5.2599 3.0040 -0.0011 7 6 5.7994 4.3048 -0.0001 8 1 6.7869 4.4803 -0.4007 9 6 5.0545 5.3723 0.5211 10 7 4.1460 5.1509 1.4338 11 14 5.3608 7.1110 -0.0894 12 1 4.4509 8.0502 0.6144 13 1 6.7704 7.4902 0.1834 14 1 5.1050 7.1747 -1.5508 15 6 6.1405 1.8320 -0.0089 16 6 7.5637 1.9909 -0.0166 17 7 8.6927 2.1169 -0.0201 18 6 5.5668 0.5541 -0.0027 19 8 6.3606 -0.5464 -0.0038 20 6 5.7075 -1.8174 -0.0043 21 6 4.1881 0.4144 -0.0021 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.2021 3.6578 0.0015 28 1 4.0452 4.2636 1.8126 29 1 5.0849 -1.9063 0.8860 30 1 5.0840 -1.9052 -0.8940 31 1 6.4555 -2.6102 -0.0047 32 1 3.7553 -0.5750 -0.0025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575644292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:27 Heat of formation + Delta-G solvation = -47.947979 kcal Electronic energy + Delta-G solvation = -17431.584740 eV Core-core repulsion = 14550.273935 eV Total energy + Delta-G solvation = -2881.310806 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56187 -38.27495 -36.47130 -34.94765 -33.57861 -31.48352 -29.42362 -28.98447 -26.88991 -25.58083 -23.16539 -22.06533 -20.78984 -18.90140 -17.47033 -16.88203 -16.24604 -15.68938 -15.23988 -15.17155 -14.27513 -14.05453 -13.47683 -13.34514 -12.88657 -12.70810 -12.48867 -12.38593 -12.06527 -11.69329 -11.54345 -11.32664 -11.26171 -10.98952 -10.74102 -10.67891 -10.51193 -10.34176 -9.93057 -9.63466 -9.14542 -7.80872 -7.63591 -7.04074 -4.90553 2.17695 2.56232 3.05816 3.14443 3.26825 3.76244 3.83503 3.88225 4.01091 4.07515 4.46446 5.10766 5.22018 5.24264 5.37667 5.43242 5.43986 5.46381 5.65999 5.68060 5.94163 5.94659 6.05508 6.18903 6.46271 6.60475 7.01857 7.12363 7.33675 7.38084 7.57710 7.66930 7.92567 8.21819 8.40952 8.46188 8.92297 9.67245 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.009179 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.399818 B = 3049.680410 C = 4630.857816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.321 6.321 4 C 0.208 3.792 5 C -0.279 4.279 6 C 0.173 3.827 7 C -0.469 4.469 8 H 0.089 0.911 9 C 0.038 3.962 10 N -0.754 5.754 11 Si 1.067 2.933 12 H -0.269 1.269 13 H -0.271 1.271 14 H -0.268 1.268 15 C -0.230 4.230 16 C 0.311 3.689 17 N -0.511 5.511 18 C 0.243 3.757 19 O -0.322 6.322 20 C 0.033 3.967 21 C -0.417 4.417 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.122 0.878 28 H 0.308 0.692 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -7.015 -1.579 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.235 6.235 4 C 0.162 3.838 5 C -0.299 4.299 6 C 0.167 3.833 7 C -0.494 4.494 8 H 0.107 0.893 9 C -0.189 4.189 10 N -0.374 5.374 11 Si 0.888 3.112 12 H -0.193 1.193 13 H -0.196 1.196 14 H -0.193 1.193 15 C -0.236 4.236 16 C 0.002 3.998 17 N -0.191 5.191 18 C 0.194 3.806 19 O -0.234 6.234 20 C -0.062 4.062 21 C -0.437 4.437 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.997 -5.175 -1.381 8.041 hybrid contribution -0.171 -2.281 -0.104 2.290 sum -6.168 -7.456 -1.485 9.790 Atomic orbital electron populations 1.21765 0.93659 1.02077 1.03293 1.22574 0.94909 0.83430 1.00832 1.86022 1.20890 1.27801 1.88776 1.18486 0.80178 0.93633 0.91515 1.20186 0.94218 0.93520 1.21959 1.17843 0.89278 0.90283 0.85910 1.20807 1.04253 0.92066 1.32307 0.89319 1.27353 0.91287 1.07050 0.93224 1.70376 1.23566 1.29149 1.14356 0.83598 0.77793 0.72202 0.77566 1.19298 1.19605 1.19320 1.16119 0.84285 0.90337 1.32895 1.25322 0.92214 0.91304 0.90963 1.80979 1.12605 1.09826 1.15727 1.18337 0.88412 0.84250 0.89560 1.86023 1.35640 1.13365 1.88389 1.22896 0.98597 0.83651 1.01058 1.20191 0.92088 0.97529 1.33936 0.91066 0.91721 0.91776 0.92709 0.92682 0.86008 0.87730 0.93060 0.93065 0.89233 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 37.16 0.38 -1.30 16 2 C 0.06 0.84 5.44 37.16 0.20 1.04 16 3 O -0.32 -6.23 10.11 -19.07 -0.19 -6.42 16 4 C 0.21 4.51 6.66 -39.31 -0.26 4.24 16 5 C -0.28 -6.66 7.90 -38.71 -0.31 -6.97 16 6 C 0.17 4.32 5.45 -104.67 -0.57 3.75 16 7 C -0.47 -11.73 8.50 -37.86 -0.32 -12.06 16 8 H 0.09 2.25 7.45 -52.49 -0.39 1.86 16 9 C 0.04 0.89 4.93 -17.31 -0.09 0.81 16 10 N -0.75 -18.35 12.32 55.56 0.68 -17.67 16 11 Si 1.07 20.09 30.01 -169.99 -5.10 14.99 16 12 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 13 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 14 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 15 C -0.23 -5.63 5.96 -103.91 -0.62 -6.25 16 16 C 0.31 7.89 13.85 -22.47 -0.31 7.58 16 17 N -0.51 -13.16 18.54 41.84 0.78 -12.39 16 18 C 0.24 5.35 6.69 -38.77 -0.26 5.09 16 19 O -0.32 -6.44 9.94 -18.79 -0.19 -6.62 16 20 C 0.03 0.47 9.80 101.05 0.99 1.46 16 21 C -0.42 -8.46 8.00 -39.18 -0.31 -8.77 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 26 H 0.05 0.75 7.62 -51.93 -0.40 0.35 16 27 H 0.12 3.00 6.53 -52.49 -0.34 2.66 16 28 H 0.31 7.69 6.77 -40.82 -0.28 7.42 16 29 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 30 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.93 4.32 -52.49 -0.23 1.70 16 LS Contribution 283.87 15.07 4.28 4.28 Total: -1.00 -28.03 283.87 -4.53 -32.56 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.31 Total: 2.65 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.47 Total: -11.38 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 1.46 Total: -30.05 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.38 Total: -13.04 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.10 Total: 14.99 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.03 -4.53 -32.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.387 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds