Wall clock time and date at job start Mon Mar 30 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47637 * 2 1 4 4 C 1.35699 * 117.00389 * 180.02562 * 3 2 1 5 5 C 1.38920 * 119.37669 * 359.97438 * 4 3 2 6 6 C 1.39156 * 120.13090 * 180.02562 * 5 4 3 7 7 C 1.43201 * 120.52215 * 180.02562 * 6 5 4 8 8 N 5.78241 * 165.32707 * 179.97438 * 2 1 3 9 9 C 1.46601 * 118.96090 * 0.27650 * 6 5 4 10 10 C 1.40348 * 120.59034 * 179.72384 * 9 6 5 11 11 H 1.07998 * 120.00234 * 38.44154 * 10 9 6 12 12 C 1.40239 * 120.00050 * 218.43830 * 10 9 6 13 13 N 1.30717 * 119.99815 * 20.07054 * 12 10 9 14 14 Si 1.86796 * 120.00220 * 200.06532 * 12 10 9 15 15 H 1.48504 * 109.46903 * 60.00120 * 14 12 10 16 16 H 1.48497 * 109.47322 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47112 * 300.00407 * 14 12 10 18 18 C 1.41571 * 118.81672 * 359.42613 * 9 6 5 19 19 O 1.35634 * 120.11287 * 180.29187 * 18 9 6 20 20 C 1.42895 * 117.00294 * 180.31150 * 19 18 9 21 21 C 1.37934 * 119.77383 * 0.59883 * 18 9 6 22 22 H 1.09004 * 109.46954 * 300.00640 * 1 2 3 23 23 H 1.08998 * 109.46660 * 60.00502 * 1 2 3 24 24 H 1.08999 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47170 * 239.99165 * 2 1 3 26 26 H 1.09004 * 109.46957 * 119.99818 * 2 1 3 27 27 H 1.07994 * 119.93421 * 0.04457 * 5 4 3 28 28 H 0.97001 * 119.99935 * 183.79142 * 13 12 10 29 29 H 1.09006 * 109.46842 * 59.99628 * 20 19 18 30 30 H 1.08999 * 109.47274 * 179.97438 * 20 19 18 31 31 H 1.09002 * 109.47008 * 299.99872 * 20 19 18 32 32 H 1.07998 * 119.46823 * 179.69003 * 21 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 4.1859 0.4141 -0.0005 6 6 5.5678 0.5782 -0.0005 7 6 6.4355 -0.5610 -0.0011 8 7 7.1239 -1.4647 0.0007 9 6 6.1214 1.9357 0.0056 10 6 7.5098 2.1407 0.0116 11 1 8.1533 1.4967 -0.5692 12 6 8.0615 3.1820 0.7719 13 7 7.3797 3.7039 1.7574 14 14 9.7708 3.8232 0.3762 15 1 9.7949 4.3428 -1.0147 16 1 10.1204 4.9156 1.3194 17 1 10.7563 2.7204 0.5097 18 6 5.2306 3.0360 -0.0010 19 8 5.7143 4.3031 -0.0016 20 6 4.7562 5.3633 -0.0015 21 6 3.8691 2.8150 -0.0006 22 1 -0.3633 0.5140 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7612 -0.5788 -0.0008 28 1 7.7379 4.4602 2.2480 29 1 4.1317 5.2885 0.8887 30 1 5.2751 6.3219 -0.0015 31 1 4.1311 5.2881 -0.8913 32 1 3.1940 3.6580 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644732.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:11 Heat of formation + Delta-G solvation = -43.693663 kcal Electronic energy + Delta-G solvation = -17539.793528 eV Core-core repulsion = 14658.667204 eV Total energy + Delta-G solvation = -2881.126325 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82667 -39.50258 -37.81693 -36.34212 -35.31671 -32.66352 -30.99447 -30.94087 -28.04129 -26.78929 -24.71906 -23.57975 -22.13025 -20.14855 -19.24963 -17.46732 -17.28269 -16.93329 -16.78567 -16.69795 -16.07736 -15.82716 -14.86768 -14.53675 -14.37061 -14.15124 -13.77244 -13.73065 -13.45563 -13.24847 -13.04531 -12.92482 -12.64645 -12.54623 -12.33561 -12.13188 -11.76156 -11.72091 -11.52274 -11.10411 -10.67430 -9.16511 -8.88412 -8.56153 -6.27049 0.23315 0.99821 1.41797 1.49004 1.52814 1.96712 2.24046 2.32268 2.56075 2.77697 2.97634 3.50430 3.59117 4.19168 4.24803 4.31549 4.47456 4.51057 4.55688 4.59479 4.75184 4.83176 4.84500 5.06093 5.11487 5.17189 5.19509 5.35121 5.58684 5.69566 5.91193 6.29274 6.46155 6.79303 6.81083 6.92919 7.18269 8.29335 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.007941 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.415878 B = 3525.063602 C = 4535.249316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 O -0.333 6.333 4 C 0.047 3.953 5 C -0.149 4.149 6 C -0.150 4.150 7 C 0.308 3.692 8 N -0.519 5.519 9 C 0.099 3.901 10 C -0.476 4.476 11 H 0.068 0.932 12 C 0.059 3.941 13 N -0.773 5.773 14 Si 0.966 3.034 15 H -0.259 1.259 16 H -0.260 1.260 17 H -0.273 1.273 18 C 0.105 3.895 19 O -0.298 6.298 20 C 0.022 3.978 21 C -0.194 4.194 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.294 0.706 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 3.567 -1.793 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.002 3.998 5 C -0.170 4.170 6 C -0.156 4.156 7 C -0.001 4.001 8 N -0.199 5.199 9 C 0.093 3.907 10 C -0.503 4.503 11 H 0.086 0.914 12 C -0.162 4.162 13 N -0.396 5.396 14 Si 0.788 3.212 15 H -0.183 1.183 16 H -0.184 1.184 17 H -0.198 1.198 18 C 0.058 3.942 19 O -0.210 6.210 20 C -0.073 4.073 21 C -0.215 4.215 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.202 2.526 -1.545 8.720 hybrid contribution 0.430 0.405 -0.007 0.591 sum -7.772 2.931 -1.552 8.450 Atomic orbital electron populations 1.21761 0.91112 1.03895 1.03170 1.22896 0.96930 0.81889 1.01225 1.85862 1.18674 1.29872 1.90486 1.17881 0.81946 0.92570 1.07383 1.20636 0.91239 0.97748 1.07423 1.16459 0.89997 0.86669 1.22501 1.25690 0.91683 0.91727 0.90970 1.80989 1.10113 1.13239 1.15526 1.17986 0.93053 0.87496 0.92134 1.19333 0.92212 1.14019 1.24774 0.91385 1.26357 1.03053 0.94650 0.92179 1.69647 1.39967 1.17800 1.12164 0.85483 0.77400 0.78511 0.79849 1.18341 1.18438 1.19759 1.18737 0.90249 0.84624 1.00575 1.86160 1.34819 1.11892 1.88129 1.23111 0.93594 0.89679 1.00955 1.20185 0.93531 0.96007 1.11735 0.91831 0.91640 0.88438 0.92285 0.92605 0.85384 0.89471 0.93319 0.87575 0.92500 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 10.28 71.98 0.74 -2.01 16 2 C 0.05 1.23 5.44 71.98 0.39 1.62 16 3 O -0.33 -11.71 10.11 -90.19 -0.91 -12.62 16 4 C 0.05 1.90 6.68 22.61 0.15 2.05 16 5 C -0.15 -6.21 8.71 22.65 0.20 -6.01 16 6 C -0.15 -7.15 5.94 -19.63 -0.12 -7.27 16 7 C 0.31 15.04 14.49 88.33 1.28 16.32 16 8 N -0.52 -25.69 18.54 19.00 0.35 -25.34 16 9 C 0.10 5.03 5.53 -19.76 -0.11 4.92 16 10 C -0.48 -24.86 8.20 23.27 0.19 -24.67 16 11 H 0.07 3.64 7.73 -2.91 -0.02 3.61 16 12 C 0.06 2.85 4.42 85.35 0.38 3.23 16 13 N -0.77 -37.66 11.23 21.88 0.25 -37.41 16 14 Si 0.97 37.70 29.61 68.60 2.03 39.73 16 15 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 16 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 C 0.10 4.86 6.17 23.02 0.14 5.00 16 19 O -0.30 -12.97 7.40 -89.48 -0.66 -13.63 16 20 C 0.02 0.69 9.81 113.37 1.11 1.80 16 21 C -0.19 -8.06 8.91 22.38 0.20 -7.86 16 22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.52 7.62 -2.39 -0.02 1.50 16 26 H 0.06 1.48 7.62 -2.38 -0.02 1.46 16 27 H 0.13 4.64 6.20 -2.91 -0.02 4.62 16 28 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16 29 H 0.05 1.48 7.65 -2.38 -0.02 1.46 16 30 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 32 H 0.13 4.85 6.22 -2.91 -0.02 4.83 16 Total: -1.00 -59.16 284.35 6.75 -52.41 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.14 Total: 9.74 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.56 Total: -12.87 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.60 Total: -62.75 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.57 Total: -26.25 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -59.16 6.75 -52.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644732.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.716 kcal (2) G-P(sol) polarization free energy of solvation -59.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds