Wall clock time and date at job start Mon Mar 30 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47270 * 2 1 4 4 C 1.35960 * 116.99844 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.75720 * 0.25679 * 4 3 2 6 6 C 1.39784 * 120.37906 * 180.26127 * 5 4 3 7 7 C 1.43199 * 120.05466 * 179.76501 * 6 5 4 8 8 N 5.78560 * 165.34322 * 180.02562 * 2 1 3 9 9 C 1.39890 * 119.88738 * 359.48138 * 6 5 4 10 10 O 1.35461 * 120.23892 * 180.27792 * 9 6 5 11 11 C 1.42898 * 116.99692 * 90.00047 * 10 9 6 12 12 C 1.41248 * 119.51542 * 0.25514 * 9 6 5 13 13 C 1.41145 * 120.19016 * 179.97438 * 12 9 6 14 14 H 1.08002 * 119.99619 * 334.23314 * 13 12 9 15 15 C 1.39924 * 120.00117 * 154.23283 * 13 12 9 16 16 N 1.30859 * 120.00169 * 343.39318 * 15 13 12 17 17 Si 1.86805 * 119.99698 * 163.39744 * 15 13 12 18 18 H 1.48493 * 109.47215 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47088 * 120.00061 * 17 15 13 20 20 H 1.48500 * 109.46798 * 239.99829 * 17 15 13 21 21 C 1.38105 * 119.74901 * 179.97438 * 4 3 2 22 22 H 1.09003 * 109.46891 * 60.00711 * 1 2 3 23 23 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47404 * 300.00167 * 1 2 3 25 25 H 1.08999 * 109.47687 * 239.99528 * 2 1 3 26 26 H 1.08999 * 109.47430 * 119.99789 * 2 1 3 27 27 H 1.07996 * 119.80745 * 359.97438 * 5 4 3 28 28 H 1.08994 * 109.47655 * 299.99795 * 11 10 9 29 29 H 1.09002 * 109.47311 * 60.00151 * 11 10 9 30 30 H 1.09003 * 109.46987 * 179.97438 * 11 10 9 31 31 H 0.97005 * 120.00591 * 180.02562 * 16 15 13 32 32 H 1.08006 * 119.94941 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.1956 0.4201 -0.0043 6 6 5.5833 0.5881 0.0016 7 6 6.4443 -0.5561 0.0016 8 7 7.1273 -1.4639 -0.0007 9 6 6.1296 1.8760 0.0016 10 8 7.4734 2.0470 0.0018 11 6 8.1170 2.1289 -1.2715 12 6 5.2697 2.9966 0.0010 13 6 5.8056 4.3024 0.0016 14 1 6.7895 4.4821 0.4090 15 6 5.0620 5.3639 -0.5257 16 7 4.0355 5.1225 -1.3006 17 14 5.5348 7.1258 -0.1235 18 1 6.7232 7.1285 0.7668 19 1 5.8545 7.8515 -1.3790 20 1 4.4019 7.7981 0.5620 21 6 3.8765 2.8038 0.0000 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7752 -0.5746 -0.0081 28 1 7.9389 1.2091 -1.8285 29 1 7.7141 2.9748 -1.8285 30 1 9.1889 2.2658 -1.1286 31 1 3.5202 5.8585 -1.6665 32 1 3.2142 3.6569 -0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:34 Heat of formation + Delta-G solvation = -36.447834 kcal Electronic energy + Delta-G solvation = -17460.513358 eV Core-core repulsion = 14579.701236 eV Total energy + Delta-G solvation = -2880.812122 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.26622 -37.97415 -35.89231 -35.40434 -33.67372 -31.37609 -30.16953 -28.34417 -26.41386 -25.21135 -23.43722 -22.08626 -20.54836 -18.97770 -16.61112 -16.43064 -15.92151 -15.82253 -15.50298 -14.81278 -14.56534 -13.63086 -13.24062 -13.00514 -12.80253 -12.74375 -12.55895 -12.42170 -12.17690 -11.82838 -11.70562 -11.30197 -11.23084 -11.12966 -10.74761 -10.58864 -10.29934 -10.11580 -9.83837 -9.32333 -8.90103 -7.79322 -7.15628 -6.91620 -4.63070 1.87273 2.47141 2.98166 3.01006 3.05804 3.38013 3.77976 3.87097 3.97809 4.38860 4.76033 4.80925 5.23121 5.34687 5.41782 5.56547 5.79491 5.97369 6.03034 6.05755 6.14361 6.17695 6.32997 6.43078 6.66513 6.85141 6.93748 7.19698 7.20740 7.55440 7.71016 8.07229 8.21079 8.35231 8.49272 8.57202 8.82015 9.92542 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.009600 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.789553 B = 2916.118331 C = 4564.401134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.321 6.321 4 C 0.135 3.865 5 C -0.267 4.267 6 C -0.001 4.001 7 C 0.284 3.716 8 N -0.466 5.466 9 C 0.003 3.997 10 O -0.324 6.324 11 C 0.036 3.964 12 C 0.121 3.879 13 C -0.433 4.433 14 H 0.093 0.907 15 C 0.073 3.927 16 N -0.776 5.776 17 Si 0.913 3.087 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.269 1.269 21 C -0.165 4.165 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.286 0.714 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -1.173 -0.111 4.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.236 6.236 4 C 0.091 3.909 5 C -0.289 4.289 6 C -0.005 4.005 7 C -0.029 4.029 8 N -0.143 5.143 9 C -0.045 4.045 10 O -0.240 6.240 11 C -0.059 4.059 12 C 0.117 3.883 13 C -0.461 4.461 14 H 0.111 0.889 15 C -0.147 4.147 16 N -0.400 5.400 17 Si 0.737 3.263 18 H -0.180 1.180 19 H -0.198 1.198 20 H -0.194 1.194 21 C -0.186 4.186 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.179 -2.302 -0.117 3.927 hybrid contribution -0.147 0.812 -0.255 0.864 sum -3.326 -1.490 -0.372 3.664 Atomic orbital electron populations 1.21747 0.93815 1.01958 1.03173 1.22559 0.94863 0.83661 1.00835 1.86056 1.20448 1.27353 1.89697 1.18606 0.80576 0.93991 0.97727 1.20227 0.91046 0.97031 1.20619 1.15882 0.90438 0.86746 1.07421 1.26030 0.92255 0.92413 0.92214 1.81052 1.10196 1.11879 1.11166 1.18580 0.82775 0.89812 1.13289 1.85898 1.17564 1.92955 1.27587 1.22833 0.96678 0.99853 0.86501 1.17418 0.90052 0.92170 0.88669 1.19599 1.03094 0.90622 1.32816 0.88919 1.26039 0.93827 1.02328 0.92551 1.69820 1.14439 1.35233 1.20483 0.86157 0.80096 0.80596 0.79463 1.18002 1.19794 1.19406 1.20653 0.94990 0.93449 1.09461 0.91803 0.91197 0.91842 0.92756 0.92751 0.87326 0.95481 0.93132 0.90666 0.90267 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.15 0.38 -1.38 16 2 C 0.06 0.85 5.45 37.15 0.20 1.06 16 3 O -0.32 -6.34 10.13 -19.61 -0.20 -6.54 16 4 C 0.14 2.96 6.67 -39.38 -0.26 2.70 16 5 C -0.27 -5.55 8.74 -38.75 -0.34 -5.89 16 6 C 0.00 -0.02 5.74 -106.78 -0.61 -0.63 16 7 C 0.28 6.11 14.85 -22.47 -0.33 5.78 16 8 N -0.47 -10.12 18.54 41.84 0.78 -9.35 16 9 C 0.00 0.07 5.76 -37.82 -0.22 -0.14 16 10 O -0.32 -7.32 9.13 -18.07 -0.17 -7.49 16 11 C 0.04 0.69 11.13 101.05 1.12 1.82 16 12 C 0.12 2.95 5.57 -106.74 -0.59 2.36 16 13 C -0.43 -10.47 8.70 -37.85 -0.33 -10.80 16 14 H 0.09 2.22 7.66 -52.49 -0.40 1.82 16 15 C 0.07 1.66 5.15 -17.34 -0.09 1.57 16 16 N -0.78 -18.17 10.96 55.55 0.61 -17.56 16 17 Si 0.91 17.14 29.59 -169.99 -5.03 12.11 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 C -0.16 -3.94 8.59 -38.72 -0.33 -4.28 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.79 7.63 -51.93 -0.40 0.39 16 26 H 0.05 0.77 7.65 -51.93 -0.40 0.38 16 27 H 0.11 2.00 6.24 -52.49 -0.33 1.67 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 32 H 0.14 3.38 6.19 -52.48 -0.32 3.05 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -26.09 288.82 -4.58 -30.67 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.52 Total: 1.65 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.40 Total: -7.84 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 1.38 Total: -26.91 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.36 Total: -14.03 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.09 -4.58 -30.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.781 kcal (2) G-P(sol) polarization free energy of solvation -26.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds