Wall clock time and date at job start Mon Mar 30 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47270 * 2 1 4 4 C 1.35960 * 116.99844 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.75720 * 0.25679 * 4 3 2 6 6 C 1.39784 * 120.37906 * 180.26127 * 5 4 3 7 7 C 1.43199 * 120.05466 * 179.76501 * 6 5 4 8 8 N 5.78560 * 165.34322 * 180.02562 * 2 1 3 9 9 C 1.39890 * 119.88738 * 359.48138 * 6 5 4 10 10 O 1.35461 * 120.23892 * 180.27792 * 9 6 5 11 11 C 1.42898 * 116.99692 * 90.00047 * 10 9 6 12 12 C 1.41248 * 119.51542 * 0.25514 * 9 6 5 13 13 C 1.41145 * 120.19016 * 179.97438 * 12 9 6 14 14 H 1.08002 * 119.99619 * 334.23314 * 13 12 9 15 15 C 1.39924 * 120.00117 * 154.23283 * 13 12 9 16 16 N 1.30859 * 120.00169 * 343.39318 * 15 13 12 17 17 Si 1.86805 * 119.99698 * 163.39744 * 15 13 12 18 18 H 1.48493 * 109.47215 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47088 * 120.00061 * 17 15 13 20 20 H 1.48500 * 109.46798 * 239.99829 * 17 15 13 21 21 C 1.38105 * 119.74901 * 179.97438 * 4 3 2 22 22 H 1.09003 * 109.46891 * 60.00711 * 1 2 3 23 23 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47404 * 300.00167 * 1 2 3 25 25 H 1.08999 * 109.47687 * 239.99528 * 2 1 3 26 26 H 1.08999 * 109.47430 * 119.99789 * 2 1 3 27 27 H 1.07996 * 119.80745 * 359.97438 * 5 4 3 28 28 H 1.08994 * 109.47655 * 299.99795 * 11 10 9 29 29 H 1.09002 * 109.47311 * 60.00151 * 11 10 9 30 30 H 1.09003 * 109.46987 * 179.97438 * 11 10 9 31 31 H 0.97005 * 120.00591 * 180.02562 * 16 15 13 32 32 H 1.08006 * 119.94941 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.1956 0.4201 -0.0043 6 6 5.5833 0.5881 0.0016 7 6 6.4443 -0.5561 0.0016 8 7 7.1273 -1.4639 -0.0007 9 6 6.1296 1.8760 0.0016 10 8 7.4734 2.0470 0.0018 11 6 8.1170 2.1289 -1.2715 12 6 5.2697 2.9966 0.0010 13 6 5.8056 4.3024 0.0016 14 1 6.7895 4.4821 0.4090 15 6 5.0620 5.3639 -0.5257 16 7 4.0355 5.1225 -1.3006 17 14 5.5348 7.1258 -0.1235 18 1 6.7232 7.1285 0.7668 19 1 5.8545 7.8515 -1.3790 20 1 4.4019 7.7981 0.5620 21 6 3.8765 2.8038 0.0000 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7752 -0.5746 -0.0081 28 1 7.9389 1.2091 -1.8285 29 1 7.7141 2.9748 -1.8285 30 1 9.1889 2.2658 -1.1286 31 1 3.5202 5.8585 -1.6665 32 1 3.2142 3.6569 -0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:34 Heat of formation + Delta-G solvation = -50.241426 kcal Electronic energy + Delta-G solvation = -17461.111493 eV Core-core repulsion = 14579.701236 eV Total energy + Delta-G solvation = -2881.410257 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92693 -39.57892 -37.61047 -37.09320 -35.38010 -32.61024 -31.90178 -29.96683 -28.06311 -26.89175 -24.91812 -23.61339 -22.16103 -20.64581 -18.29532 -18.17168 -17.54452 -17.49584 -16.83344 -16.42421 -16.20318 -15.17940 -14.85801 -14.66261 -14.44030 -14.25505 -14.10571 -13.88041 -13.47505 -13.37345 -13.18711 -12.86165 -12.75491 -12.61070 -12.15497 -12.13852 -11.84733 -11.74747 -11.35935 -10.99171 -10.60402 -9.57144 -8.86538 -8.61639 -6.43867 0.11763 0.77028 1.44107 1.49377 1.59107 1.65574 2.12784 2.22924 2.55037 2.68857 3.04159 3.10956 3.64492 4.17174 4.24473 4.34605 4.46858 4.51203 4.61213 4.68571 4.79475 4.85511 4.94461 5.03834 5.12779 5.18967 5.28894 5.46859 5.52944 5.79687 5.93419 6.29516 6.47494 6.63944 6.79521 6.81634 7.08432 8.24748 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.009600 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.789553 B = 2916.118331 C = 4564.401134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.139 3.861 5 C -0.256 4.256 6 C -0.004 4.004 7 C 0.292 3.708 8 N -0.467 5.467 9 C -0.010 4.010 10 O -0.339 6.339 11 C 0.036 3.964 12 C 0.100 3.900 13 C -0.460 4.460 14 H 0.085 0.915 15 C 0.040 3.960 16 N -0.804 5.804 17 Si 0.981 3.019 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.263 1.263 21 C -0.186 4.186 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.137 0.863 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.106 0.894 31 H 0.294 0.706 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -1.727 -0.100 4.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.250 6.250 4 C 0.094 3.906 5 C -0.278 4.278 6 C -0.008 4.008 7 C -0.022 4.022 8 N -0.144 5.144 9 C -0.058 4.058 10 O -0.256 6.256 11 C -0.059 4.059 12 C 0.096 3.904 13 C -0.488 4.488 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.428 5.428 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.188 1.188 21 C -0.207 4.207 22 H 0.079 0.921 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.549 -2.881 -0.112 4.573 hybrid contribution -0.085 0.856 -0.278 0.904 sum -3.634 -2.026 -0.390 4.179 Atomic orbital electron populations 1.21778 0.91244 1.04028 1.03062 1.22991 0.96976 0.81518 1.01689 1.86056 1.19086 1.30567 1.89294 1.18599 0.81822 0.93532 0.96631 1.20468 0.90436 0.98010 1.18879 1.15949 0.91058 0.86438 1.07399 1.25841 0.92094 0.92154 0.92083 1.81058 1.10102 1.11988 1.11234 1.18704 0.83137 0.90168 1.13788 1.85839 1.17267 1.93045 1.29418 1.22980 0.98092 0.99565 0.85234 1.17672 0.90604 0.92883 0.89223 1.19705 1.03360 0.91487 1.34273 0.89669 1.26763 0.93508 1.05733 0.91811 1.69853 1.15248 1.36730 1.20992 0.85157 0.79667 0.75714 0.79323 1.18181 1.18930 1.18776 1.20582 0.94823 0.94029 1.11305 0.92073 0.87983 0.91841 0.91984 0.91668 0.84532 0.95247 0.94042 0.87532 0.89476 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.04 1.20 5.45 71.98 0.39 1.60 16 3 O -0.34 -13.00 10.13 -93.09 -0.94 -13.95 16 4 C 0.14 6.06 6.67 22.40 0.15 6.21 16 5 C -0.26 -10.33 8.74 22.81 0.20 -10.13 16 6 C 0.00 -0.19 5.74 -21.26 -0.12 -0.31 16 7 C 0.29 12.14 14.85 88.33 1.31 13.45 16 8 N -0.47 -19.48 18.54 19.00 0.35 -19.13 16 9 C -0.01 -0.49 5.76 23.41 0.13 -0.35 16 10 O -0.34 -15.35 9.13 -87.59 -0.80 -16.15 16 11 C 0.04 1.34 11.13 113.37 1.26 2.60 16 12 C 0.10 5.00 5.57 -21.24 -0.12 4.88 16 13 C -0.46 -22.84 8.70 23.39 0.20 -22.63 16 14 H 0.09 4.21 7.66 -2.91 -0.02 4.18 16 15 C 0.04 1.83 5.15 85.25 0.44 2.27 16 16 N -0.80 -38.36 10.96 21.82 0.24 -38.12 16 17 Si 0.98 35.21 29.59 68.60 2.03 37.24 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 19 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 21 C -0.19 -9.15 8.59 22.83 0.20 -8.95 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.64 7.63 -2.39 -0.02 1.62 16 26 H 0.07 1.69 7.65 -2.39 -0.02 1.67 16 27 H 0.14 4.67 6.24 -2.91 -0.02 4.65 16 28 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.29 12.60 8.30 -92.70 -0.77 11.83 16 32 H 0.12 6.15 6.19 -2.91 -0.02 6.13 16 Total: -1.00 -55.83 288.82 6.81 -49.03 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.14 Total: 14.74 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.79 Total: -13.65 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.59 Total: -57.26 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.74 Total: -30.10 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -55.83 6.81 -49.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.216 kcal (2) G-P(sol) polarization free energy of solvation -55.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds