Wall clock time and date at job start Mon Mar 30 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47025 * 2 1 4 4 C 1.35841 * 116.99822 * 179.97438 * 3 2 1 5 5 C 1.40267 * 120.11133 * 89.99937 * 4 3 2 6 6 C 1.43203 * 119.90031 * 0.05016 * 5 4 3 7 7 N 3.93446 * 108.49335 * 292.88555 * 2 1 3 8 8 C 1.40385 * 120.20077 * 180.02562 * 5 4 3 9 9 C 1.35935 * 120.42970 * 0.02562 * 8 5 4 10 10 C 1.41066 * 120.21691 * 0.02562 * 9 8 5 11 11 C 1.40806 * 120.10123 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99875 * 205.93289 * 11 10 9 13 13 C 1.40159 * 120.00341 * 25.65684 * 11 10 9 14 14 N 1.30722 * 119.99969 * 17.23656 * 13 11 10 15 15 Si 1.86797 * 120.00489 * 197.23767 * 13 11 10 16 16 H 1.48502 * 109.47276 * 89.99677 * 15 13 11 17 17 H 1.48494 * 109.47402 * 210.00242 * 15 13 11 18 18 H 1.48506 * 109.46849 * 330.00156 * 15 13 11 19 19 C 1.38635 * 120.11224 * 270.28608 * 4 3 2 20 20 O 1.35752 * 120.20758 * 359.97438 * 19 4 3 21 21 C 1.42899 * 117.00111 * 270.23233 * 20 19 4 22 22 H 1.09005 * 109.47304 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47292 * 299.99673 * 1 2 3 24 24 H 1.09008 * 109.47276 * 59.99829 * 1 2 3 25 25 H 1.09001 * 109.46782 * 239.99812 * 2 1 3 26 26 H 1.08998 * 109.46785 * 120.00343 * 2 1 3 27 27 H 1.07999 * 119.78440 * 179.97438 * 8 5 4 28 28 H 1.07998 * 119.89243 * 179.97438 * 9 8 5 29 29 H 0.96993 * 120.00597 * 179.97438 * 14 13 11 30 30 H 1.09003 * 109.46761 * 60.00581 * 21 20 19 31 31 H 1.08994 * 109.47198 * 179.97438 * 21 20 19 32 32 H 1.09000 * 109.47495 * 300.00739 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3530 1.5252 0.0005 5 6 4.0512 1.6172 -1.2126 6 6 3.3420 1.5243 -2.4532 7 7 2.7780 1.4511 -3.4376 8 6 5.4430 1.8006 -1.2142 9 6 6.1270 1.8902 -0.0429 10 6 5.4430 1.7990 1.1875 11 6 6.1540 1.8915 2.3993 12 1 5.7624 1.4265 3.2920 13 6 7.3728 2.5821 2.4458 14 7 7.6901 3.4131 1.4879 15 14 8.5437 2.3152 3.8765 16 1 9.4718 1.2012 3.5555 17 1 9.3236 3.5559 4.1161 18 1 7.7664 1.9760 5.0956 19 6 4.0428 1.6106 1.2001 20 8 3.3767 1.5174 2.3792 21 6 2.8875 2.7346 2.9460 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.9738 1.8701 -2.1521 28 1 7.1977 2.0308 -0.0543 29 1 8.5333 3.8914 1.5202 30 1 2.1902 3.2040 2.2520 31 1 2.3760 2.5188 3.8839 32 1 3.7227 3.4093 3.1339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647448.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:15 Heat of formation + Delta-G solvation = -39.380368 kcal Electronic energy + Delta-G solvation = -17708.068168 eV Core-core repulsion = 14827.128882 eV Total energy + Delta-G solvation = -2880.939286 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28770 -37.08691 -36.27780 -35.25238 -33.82121 -31.26673 -30.01117 -28.26986 -26.53406 -25.47685 -22.79909 -21.88057 -20.94226 -18.16579 -18.00193 -16.12855 -16.07947 -15.56215 -14.82834 -14.68476 -14.34105 -13.97983 -13.57262 -13.11159 -12.71951 -12.62283 -12.35052 -12.03950 -11.91840 -11.88892 -11.51323 -11.25191 -11.21592 -11.07243 -10.85293 -10.53209 -10.33287 -10.10115 -9.53375 -9.47376 -8.63006 -7.72396 -7.54497 -7.21075 -4.77523 1.94072 2.39404 2.84423 2.88935 2.91498 3.62723 3.65784 3.80243 4.24398 4.55552 4.78802 5.20154 5.38740 5.40774 5.54927 5.75618 5.90110 6.11013 6.15658 6.18774 6.23183 6.33805 6.38400 6.59480 6.64711 6.69635 6.83209 7.19447 7.39780 7.61914 7.68165 8.05383 8.14110 8.31813 8.41197 8.55831 8.89848 9.68170 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.007706 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.198782 B = 3632.704563 C = 4445.837130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 O -0.341 6.341 4 C 0.165 3.835 5 C -0.199 4.199 6 C 0.294 3.706 7 N -0.501 5.501 8 C -0.045 4.045 9 C -0.162 4.162 10 C 0.121 3.879 11 C -0.413 4.413 12 H 0.095 0.905 13 C 0.071 3.929 14 N -0.762 5.762 15 Si 0.918 3.082 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.051 4.051 20 O -0.319 6.319 21 C 0.038 3.962 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.291 0.709 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -2.247 4.054 4.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.004 4.004 3 O -0.258 6.258 4 C 0.119 3.881 5 C -0.205 4.205 6 C -0.017 4.017 7 N -0.180 5.180 8 C -0.066 4.066 9 C -0.181 4.181 10 C 0.116 3.884 11 C -0.440 4.440 12 H 0.113 0.887 13 C -0.152 4.152 14 N -0.384 5.384 15 Si 0.741 3.259 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.180 1.180 19 C -0.097 4.097 20 O -0.236 6.236 21 C -0.057 4.057 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.556 -2.198 2.560 4.233 hybrid contribution 0.947 0.247 0.839 1.289 sum -1.609 -1.951 3.399 4.237 Atomic orbital electron populations 1.21729 0.94127 1.01795 1.02795 1.22538 0.94579 0.82892 1.00409 1.85826 1.19080 1.26419 1.94518 1.18673 0.81033 0.97528 0.90862 1.15653 0.92670 1.27118 0.85098 1.25847 0.92005 0.91298 0.92508 1.81077 1.09850 1.14969 1.12080 1.20263 0.90812 0.97497 0.97988 1.20877 1.00201 1.06555 0.90506 1.17892 0.89649 0.86843 0.93996 1.19827 1.01566 1.25738 0.96851 0.88665 1.26205 0.98297 0.92778 0.97917 1.69749 1.22142 1.15507 1.30961 0.86111 0.79692 0.79126 0.80943 1.18665 1.19868 1.18006 1.18624 0.89782 1.18055 0.83204 1.85928 1.72886 1.29463 1.35274 1.22786 0.97710 0.88262 0.96979 0.91280 0.91841 0.92271 0.93882 0.92542 0.87797 0.85253 0.89735 0.94862 0.91025 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 37.16 0.38 -1.70 16 2 C 0.07 1.24 6.78 37.16 0.25 1.50 16 3 O -0.34 -7.24 9.26 -33.94 -0.31 -7.56 16 4 C 0.17 3.73 5.73 -38.67 -0.22 3.51 16 5 C -0.20 -4.41 5.77 -106.40 -0.61 -5.03 16 6 C 0.29 6.51 14.84 -22.44 -0.33 6.17 16 7 N -0.50 -11.34 18.54 41.87 0.78 -10.57 16 8 C -0.04 -0.96 9.67 -39.60 -0.38 -1.34 16 9 C -0.16 -3.67 8.60 -39.34 -0.34 -4.01 16 10 C 0.12 2.86 5.57 -106.70 -0.59 2.26 16 11 C -0.41 -9.52 8.69 -37.89 -0.33 -9.85 16 12 H 0.10 2.18 7.65 -52.49 -0.40 1.77 16 13 C 0.07 1.52 5.14 -17.30 -0.09 1.43 16 14 N -0.76 -16.76 10.98 55.56 0.61 -16.15 16 15 Si 0.92 16.08 29.59 -169.99 -5.03 11.05 16 16 H -0.26 -4.56 7.11 56.52 0.40 -4.15 16 17 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 18 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 19 C -0.05 -1.18 5.76 -38.28 -0.22 -1.40 16 20 O -0.32 -7.02 9.48 -33.66 -0.32 -7.34 16 21 C 0.04 0.71 11.13 101.05 1.12 1.83 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.13 2.93 6.19 -52.49 -0.33 2.60 16 29 H 0.29 5.75 8.29 -40.82 -0.34 5.41 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -25.68 292.47 -4.90 -30.58 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.67 Total: 2.20 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.36 Total: -6.62 kcal Atomic # 7 Polarization: -28.11 SS G_CDS: 1.39 Total: -26.72 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.63 Total: -14.90 kcal Atomic # 14 Polarization: 16.08 SS G_CDS: -5.03 Total: 11.05 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.68 -4.90 -30.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647448.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.798 kcal (2) G-P(sol) polarization free energy of solvation -25.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds