Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46886 * 2 1 4 4 C 1.35508 * 117.00175 * 179.97438 * 3 2 1 5 5 C 1.38740 * 119.85798 * 0.02562 * 4 3 2 6 6 C 1.38147 * 120.30000 * 179.70214 * 5 4 3 7 7 O 1.35530 * 120.00047 * 180.27346 * 6 5 4 8 8 C 1.42908 * 116.99861 * 359.97438 * 7 6 5 9 9 C 1.41630 * 120.00501 * 0.28839 * 6 5 4 10 10 C 1.41095 * 120.14078 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00124 * 24.89179 * 10 9 6 12 12 C 1.39858 * 119.99931 * 204.89392 * 10 9 6 13 13 N 1.30928 * 119.99915 * 17.82049 * 12 10 9 14 14 Si 1.86803 * 119.99729 * 197.82194 * 12 10 9 15 15 H 1.48494 * 109.47467 * 60.00079 * 14 12 10 16 16 H 1.48502 * 109.46834 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46884 * 299.99447 * 14 12 10 18 18 C 1.40359 * 119.71711 * 359.97438 * 9 6 5 19 19 C 1.39027 * 119.70606 * 359.97438 * 18 9 6 20 20 C 1.43201 * 120.00416 * 179.97438 * 19 18 9 21 21 N 4.92374 * 99.18077 * 0.19269 * 2 1 3 22 22 H 1.08990 * 109.47293 * 60.00092 * 1 2 3 23 23 H 1.09000 * 109.46421 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47282 * 299.99207 * 1 2 3 25 25 H 1.09000 * 109.47282 * 240.00793 * 2 1 3 26 26 H 1.08993 * 109.47756 * 120.00116 * 2 1 3 27 27 H 1.08004 * 119.85286 * 359.96516 * 5 4 3 28 28 H 1.08999 * 109.46635 * 300.00161 * 8 7 6 29 29 H 1.08998 * 109.46936 * 60.00033 * 8 7 6 30 30 H 1.09001 * 109.46673 * 180.02562 * 8 7 6 31 31 H 0.97002 * 119.99696 * 180.02562 * 13 12 10 32 32 H 1.08000 * 120.14853 * 179.97438 * 18 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5250 0.0005 5 6 4.1922 0.4227 0.0005 6 6 5.5631 0.5932 -0.0051 7 8 6.3804 -0.4879 -0.0107 8 6 5.7560 -1.7733 -0.0098 9 6 6.1145 1.8977 -0.0048 10 6 7.5143 2.0752 -0.0111 11 1 8.1548 1.3024 -0.4096 12 6 8.0722 3.2519 0.4988 13 7 7.3654 4.0247 1.2846 14 14 9.8260 3.7211 0.0586 15 1 9.9420 3.8777 -1.4135 16 1 10.1766 5.0030 0.7214 17 1 10.7534 2.6560 0.5178 18 6 5.2627 3.0132 0.0008 19 6 3.8848 2.8278 0.0054 20 6 3.0098 3.9614 0.0116 21 7 2.3156 4.8606 0.0163 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 3.7744 -0.5733 0.0006 28 1 5.1392 -1.8770 0.8829 29 1 5.1309 -1.8742 -0.8970 30 1 6.5216 -2.5491 -0.0142 31 1 7.7523 4.8410 1.6379 32 1 5.6757 4.0111 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647689.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = -33.445172 kcal Electronic energy + Delta-G solvation = -17430.954599 eV Core-core repulsion = 14550.272683 eV Total energy + Delta-G solvation = -2880.681917 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.51972 -38.04983 -36.32447 -35.17482 -33.43967 -31.37498 -29.59165 -29.33439 -26.84053 -25.08132 -23.19020 -22.03448 -20.85172 -18.36520 -17.72296 -16.64244 -15.93681 -15.65456 -15.37309 -14.86923 -14.37262 -13.85435 -13.53466 -13.14038 -12.97447 -12.69457 -12.44941 -12.35180 -11.98839 -11.73278 -11.63880 -11.32801 -11.23855 -11.04527 -10.73021 -10.64707 -10.58299 -10.24097 -9.90549 -9.58851 -9.09047 -7.66312 -7.16257 -6.80555 -4.30246 2.06587 2.56191 3.07166 3.08604 3.12489 3.66052 3.85294 3.92144 3.95519 4.20503 4.60480 5.05666 5.13780 5.24679 5.36268 5.45740 5.54749 5.62972 5.66077 5.75404 5.87783 5.96473 6.07464 6.25151 6.44920 6.85657 7.02705 7.09727 7.27279 7.46507 7.78082 8.09844 8.15649 8.41608 8.57258 8.68831 8.82610 10.13951 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.007823 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.769353 B = 3578.312385 C = 4744.911674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.322 6.322 4 C 0.082 3.918 5 C -0.261 4.261 6 C 0.079 3.921 7 O -0.303 6.303 8 C 0.031 3.969 9 C 0.070 3.930 10 C -0.443 4.443 11 H 0.086 0.914 12 C 0.072 3.928 13 N -0.799 5.799 14 Si 0.912 3.088 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.071 4.071 19 C -0.070 4.070 20 C 0.294 3.706 21 N -0.478 5.478 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.284 0.716 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -9.116 -1.752 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.236 6.236 4 C 0.035 3.965 5 C -0.281 4.281 6 C 0.033 3.967 7 O -0.216 6.216 8 C -0.065 4.065 9 C 0.067 3.933 10 C -0.472 4.472 11 H 0.104 0.896 12 C -0.145 4.145 13 N -0.425 5.425 14 Si 0.736 3.264 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.093 4.093 19 C -0.075 4.075 20 C -0.019 4.019 21 N -0.156 5.156 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.195 -7.388 -1.595 8.644 hybrid contribution 0.854 -0.613 -0.012 1.051 sum -3.341 -8.001 -1.607 8.819 Atomic orbital electron populations 1.21750 0.93767 1.02030 1.03203 1.22533 0.94883 0.83450 1.00671 1.85886 1.20145 1.27545 1.90055 1.18035 0.80843 0.91797 1.05826 1.20607 0.93163 0.97071 1.17217 1.19174 0.87390 0.87175 1.02958 1.86002 1.34161 1.12311 1.89100 1.22838 0.98846 0.84669 1.00180 1.16830 0.94271 0.86583 0.95598 1.19276 0.91358 1.01806 1.34759 0.89581 1.25887 1.00408 0.95593 0.92631 1.69790 1.38731 1.11927 1.22079 0.86295 0.81779 0.78344 0.79961 1.18775 1.20400 1.18971 1.21079 0.87710 1.00048 1.00475 1.15285 0.91101 0.84552 1.16576 1.25804 0.91942 0.92442 0.91707 1.81020 1.10491 1.11654 1.12442 0.91865 0.91040 0.91843 0.92836 0.92820 0.86647 0.93802 0.93879 0.89504 0.90513 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.06 0.87 5.45 37.16 0.20 1.07 16 3 O -0.32 -6.25 9.54 -18.22 -0.17 -6.43 16 4 C 0.08 1.75 6.71 -38.41 -0.26 1.49 16 5 C -0.26 -5.21 7.99 -39.43 -0.31 -5.53 16 6 C 0.08 1.76 6.72 -38.32 -0.26 1.51 16 7 O -0.30 -6.18 9.75 -18.28 -0.18 -6.36 16 8 C 0.03 0.44 9.80 101.05 0.99 1.43 16 9 C 0.07 1.72 5.58 -106.72 -0.60 1.13 16 10 C -0.44 -11.01 8.70 -37.89 -0.33 -11.34 16 11 H 0.09 2.11 7.64 -52.49 -0.40 1.70 16 12 C 0.07 1.71 5.13 -17.33 -0.09 1.62 16 13 N -0.80 -19.71 10.98 55.54 0.61 -19.10 16 14 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 15 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 16 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 18 C -0.07 -1.71 8.37 -38.49 -0.32 -2.04 16 19 C -0.07 -1.62 5.75 -106.69 -0.61 -2.23 16 20 C 0.29 6.80 14.84 -22.47 -0.33 6.47 16 21 N -0.48 -11.25 18.54 41.84 0.78 -10.47 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.71 7.64 -51.93 -0.40 0.32 16 26 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 27 H 0.12 1.93 4.43 -52.48 -0.23 1.70 16 28 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.04 0.56 7.65 -51.93 -0.40 0.17 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 32 H 0.14 3.57 6.17 -52.49 -0.32 3.25 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -27.59 284.73 -4.62 -32.21 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.37 Total: 0.65 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.54 Total: -7.78 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 1.39 Total: -29.57 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.35 Total: -12.79 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.59 -4.62 -32.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647689.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.236 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds