Wall clock time and date at job start Mon Mar 30 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46886 * 2 1 4 4 C 1.35508 * 117.00175 * 179.97438 * 3 2 1 5 5 C 1.38740 * 119.85798 * 0.02562 * 4 3 2 6 6 C 1.38147 * 120.30000 * 179.70214 * 5 4 3 7 7 O 1.35530 * 120.00047 * 180.27346 * 6 5 4 8 8 C 1.42908 * 116.99861 * 359.97438 * 7 6 5 9 9 C 1.41630 * 120.00501 * 0.28839 * 6 5 4 10 10 C 1.41095 * 120.14078 * 180.02562 * 9 6 5 11 11 H 1.08001 * 120.00124 * 24.89179 * 10 9 6 12 12 C 1.39858 * 119.99931 * 204.89392 * 10 9 6 13 13 N 1.30928 * 119.99915 * 17.82049 * 12 10 9 14 14 Si 1.86803 * 119.99729 * 197.82194 * 12 10 9 15 15 H 1.48494 * 109.47467 * 60.00079 * 14 12 10 16 16 H 1.48502 * 109.46834 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46884 * 299.99447 * 14 12 10 18 18 C 1.40359 * 119.71711 * 359.97438 * 9 6 5 19 19 C 1.39027 * 119.70606 * 359.97438 * 18 9 6 20 20 C 1.43201 * 120.00416 * 179.97438 * 19 18 9 21 21 N 4.92374 * 99.18077 * 0.19269 * 2 1 3 22 22 H 1.08990 * 109.47293 * 60.00092 * 1 2 3 23 23 H 1.09000 * 109.46421 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47282 * 299.99207 * 1 2 3 25 25 H 1.09000 * 109.47282 * 240.00793 * 2 1 3 26 26 H 1.08993 * 109.47756 * 120.00116 * 2 1 3 27 27 H 1.08004 * 119.85286 * 359.96516 * 5 4 3 28 28 H 1.08999 * 109.46635 * 300.00161 * 8 7 6 29 29 H 1.08998 * 109.46936 * 60.00033 * 8 7 6 30 30 H 1.09001 * 109.46673 * 180.02562 * 8 7 6 31 31 H 0.97002 * 119.99696 * 180.02562 * 13 12 10 32 32 H 1.08000 * 120.14853 * 179.97438 * 18 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5250 0.0005 5 6 4.1922 0.4227 0.0005 6 6 5.5631 0.5932 -0.0051 7 8 6.3804 -0.4879 -0.0107 8 6 5.7560 -1.7733 -0.0098 9 6 6.1145 1.8977 -0.0048 10 6 7.5143 2.0752 -0.0111 11 1 8.1548 1.3024 -0.4096 12 6 8.0722 3.2519 0.4988 13 7 7.3654 4.0247 1.2846 14 14 9.8260 3.7211 0.0586 15 1 9.9420 3.8777 -1.4135 16 1 10.1766 5.0030 0.7214 17 1 10.7534 2.6560 0.5178 18 6 5.2627 3.0132 0.0008 19 6 3.8848 2.8278 0.0054 20 6 3.0098 3.9614 0.0116 21 7 2.3156 4.8606 0.0163 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 3.7744 -0.5733 0.0006 28 1 5.1392 -1.8770 0.8829 29 1 5.1309 -1.8742 -0.8970 30 1 6.5216 -2.5491 -0.0142 31 1 7.7523 4.8410 1.6379 32 1 5.6757 4.0111 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647689.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:31 Heat of formation + Delta-G solvation = -49.176292 kcal Electronic energy + Delta-G solvation = -17431.636752 eV Core-core repulsion = 14550.272683 eV Total energy + Delta-G solvation = -2881.364069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13144 -39.56969 -38.00760 -36.95392 -35.14496 -32.60339 -31.20942 -31.01304 -28.15042 -26.79662 -24.44712 -23.72068 -22.41889 -20.05543 -19.26896 -18.36719 -17.50185 -17.05264 -16.93591 -16.23654 -15.95764 -15.33317 -15.12504 -14.75499 -14.65809 -14.25131 -13.76202 -13.69054 -13.52381 -13.31750 -13.17287 -12.78949 -12.70747 -12.53156 -12.20638 -12.15873 -11.84561 -11.81397 -11.56129 -11.18251 -10.78237 -9.34356 -8.91090 -8.54638 -6.12919 0.29397 0.85376 1.45901 1.51841 1.57432 1.82354 2.15677 2.28930 2.47157 2.75311 2.83203 3.28179 3.57819 4.08369 4.13331 4.26265 4.37360 4.47082 4.54113 4.59218 4.71164 4.81812 4.86358 4.98863 5.15017 5.23727 5.27712 5.35825 5.53158 5.72650 6.00561 6.38246 6.53485 6.65352 6.79705 6.93005 7.11629 8.41264 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.007823 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.769353 B = 3578.312385 C = 4744.911674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.338 6.338 4 C 0.104 3.896 5 C -0.258 4.258 6 C 0.091 3.909 7 O -0.324 6.324 8 C 0.018 3.982 9 C 0.035 3.965 10 C -0.474 4.474 11 H 0.080 0.920 12 C 0.034 3.966 13 N -0.835 5.835 14 Si 0.977 3.023 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.260 1.260 18 C -0.083 4.083 19 C -0.094 4.094 20 C 0.299 3.701 21 N -0.492 5.492 22 H 0.058 0.942 23 H 0.106 0.894 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.287 0.713 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -11.522 -2.038 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.253 6.253 4 C 0.056 3.944 5 C -0.277 4.277 6 C 0.044 3.956 7 O -0.238 6.238 8 C -0.077 4.077 9 C 0.032 3.968 10 C -0.504 4.504 11 H 0.098 0.902 12 C -0.179 4.179 13 N -0.462 5.462 14 Si 0.798 3.202 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.184 1.184 18 C -0.106 4.106 19 C -0.099 4.099 20 C -0.013 4.013 21 N -0.171 5.171 22 H 0.077 0.923 23 H 0.125 0.875 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.173 0.827 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.867 -9.827 -1.885 11.127 hybrid contribution 0.867 -0.110 0.070 0.877 sum -4.001 -9.936 -1.814 10.864 Atomic orbital electron populations 1.21794 0.91615 1.04185 1.02714 1.23018 0.96679 0.81143 1.02101 1.85903 1.18765 1.31137 1.89462 1.18150 0.82096 0.91330 1.02830 1.20870 0.92054 0.98525 1.16270 1.19290 0.88375 0.87230 1.00687 1.85978 1.35358 1.13855 1.88589 1.23270 1.00450 0.82307 1.01649 1.17120 0.94602 0.88004 0.97060 1.19401 0.91788 1.02725 1.36493 0.90153 1.26614 1.04062 0.95188 0.92032 1.69857 1.40470 1.12551 1.23367 0.85317 0.77170 0.78111 0.79576 1.18544 1.19871 1.18446 1.20852 0.88368 0.99370 1.01996 1.15361 0.90681 0.85505 1.18359 1.25911 0.91715 0.92383 0.91317 1.80998 1.11046 1.11776 1.13244 0.92286 0.87527 0.92461 0.91128 0.91435 0.82735 0.92412 0.92034 0.86618 0.90275 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.28 71.98 0.74 -2.14 16 2 C 0.05 1.14 5.45 71.98 0.39 1.53 16 3 O -0.34 -12.43 9.54 -88.10 -0.84 -13.27 16 4 C 0.10 4.29 6.71 23.03 0.15 4.44 16 5 C -0.26 -9.70 7.99 22.37 0.18 -9.52 16 6 C 0.09 3.97 6.72 23.09 0.16 4.13 16 7 O -0.32 -12.71 9.75 -88.34 -0.86 -13.57 16 8 C 0.02 0.45 9.80 113.37 1.11 1.56 16 9 C 0.03 1.75 5.58 -21.23 -0.12 1.63 16 10 C -0.47 -24.30 8.70 23.36 0.20 -24.09 16 11 H 0.08 4.04 7.64 -2.91 -0.02 4.02 16 12 C 0.03 1.68 5.13 85.22 0.44 2.12 16 13 N -0.83 -42.84 10.98 21.82 0.24 -42.60 16 14 Si 0.98 37.66 29.60 68.60 2.03 39.69 16 15 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 16 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 18 C -0.08 -4.19 8.37 22.98 0.19 -3.99 16 19 C -0.09 -4.39 5.75 -21.20 -0.12 -4.51 16 20 C 0.30 14.05 14.84 88.33 1.31 15.36 16 21 N -0.49 -23.39 18.54 19.00 0.35 -23.04 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.57 7.64 -2.39 -0.02 1.55 16 26 H 0.07 1.54 7.64 -2.39 -0.02 1.52 16 27 H 0.16 4.48 4.43 -2.91 -0.01 4.47 16 28 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 29 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 30 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.29 13.56 8.30 -92.71 -0.77 12.80 16 32 H 0.12 6.51 6.17 -2.91 -0.02 6.49 16 Total: -1.00 -61.18 284.73 6.70 -54.48 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.15 Total: 11.80 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 4.64 Total: -13.49 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: 0.59 Total: -65.64 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.70 Total: -26.84 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -61.18 6.70 -54.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647689.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.301 kcal (2) G-P(sol) polarization free energy of solvation -61.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds