Wall clock time and date at job start Mon Mar 30 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47526 * 2 1 4 4 C 1.35972 * 117.00152 * 179.97438 * 3 2 1 5 5 C 1.37752 * 119.87161 * 0.02562 * 4 3 2 6 6 C 1.40903 * 120.10266 * 180.02562 * 5 4 3 7 7 C 1.41262 * 120.06575 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00258 * 24.68717 * 7 6 5 9 9 C 1.39856 * 119.99862 * 204.67866 * 7 6 5 10 10 N 1.30902 * 119.99537 * 18.00997 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 198.00058 * 9 7 6 12 12 H 1.48498 * 109.47148 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46755 * 120.00294 * 11 9 7 14 14 H 1.48497 * 109.47179 * 240.00199 * 11 9 7 15 15 C 1.40518 * 119.85765 * 359.97438 * 6 5 4 16 16 C 1.39037 * 119.75166 * 0.02562 * 15 6 5 17 17 C 1.43198 * 120.05422 * 180.02562 * 16 15 6 18 18 N 7.16078 * 131.24191 * 359.97438 * 2 1 3 19 19 C 1.39687 * 119.87284 * 180.27800 * 4 3 2 20 20 O 1.35555 * 119.92937 * 0.02562 * 19 4 3 21 21 C 1.42898 * 117.00093 * 270.27482 * 20 19 4 22 22 H 1.08998 * 109.46879 * 300.00048 * 1 2 3 23 23 H 1.08994 * 109.46771 * 59.99610 * 1 2 3 24 24 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47314 * 239.99845 * 2 1 3 26 26 H 1.09007 * 109.47089 * 120.00376 * 2 1 3 27 27 H 1.07993 * 119.95047 * 0.02562 * 5 4 3 28 28 H 0.96999 * 119.99967 * 179.97438 * 10 9 7 29 29 H 1.08007 * 120.12202 * 180.02562 * 15 6 5 30 30 H 1.09005 * 109.47316 * 300.00692 * 21 20 19 31 31 H 1.09002 * 109.46815 * 60.00316 * 21 20 19 32 32 H 1.08997 * 109.47399 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1911 0.4310 0.0005 6 6 5.5887 0.6099 0.0016 7 6 6.4459 -0.5129 0.0011 8 1 6.0985 -1.4574 -0.3907 9 6 7.7447 -0.4013 0.5077 10 7 8.0584 0.6009 1.2892 11 14 9.0315 -1.6825 0.0697 12 1 8.4283 -2.7051 -0.8222 13 1 10.1664 -1.0258 -0.6274 14 1 9.5230 -2.3347 1.3099 15 6 6.1279 1.9076 0.0022 16 6 5.2779 3.0079 0.0022 17 6 5.8203 4.3331 0.0023 18 7 6.2507 5.3844 -0.0024 19 6 3.8855 2.8173 0.0065 20 8 3.0561 3.8895 0.0122 21 6 2.6536 4.4051 -1.2583 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7752 -0.5656 -0.0003 28 1 8.9591 0.6782 1.6409 29 1 7.1985 2.0496 0.0026 30 1 3.5343 4.7189 -1.8187 31 1 2.1263 3.6299 -1.8144 32 1 1.9927 5.2592 -1.1110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575648345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:30 Heat of formation + Delta-G solvation = -37.324424 kcal Electronic energy + Delta-G solvation = -17445.320808 eV Core-core repulsion = 14564.470674 eV Total energy + Delta-G solvation = -2880.850134 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.42409 -37.52481 -36.38629 -35.47611 -33.48349 -31.37097 -30.14505 -28.49457 -26.71099 -24.86174 -23.65753 -21.65388 -21.15678 -18.77544 -16.94781 -16.23084 -15.95895 -15.74190 -15.58026 -14.93185 -14.62878 -13.67916 -13.43429 -13.03429 -12.87593 -12.58381 -12.53991 -12.43264 -12.12908 -11.85245 -11.64083 -11.39911 -11.25195 -10.96641 -10.84106 -10.65103 -10.45094 -10.03657 -9.94353 -9.33003 -9.04918 -7.77738 -7.17896 -7.08065 -4.67500 1.87073 2.54071 2.92098 2.94938 2.99300 3.45257 3.71161 3.83941 3.91362 4.34370 4.75422 4.96094 5.23781 5.33252 5.35693 5.59168 5.80124 5.86994 5.94236 6.06191 6.09145 6.16283 6.31922 6.51399 6.57726 6.70209 6.86841 6.95942 7.44636 7.48571 7.74153 8.00019 8.14256 8.27922 8.41905 8.52343 8.73342 9.85127 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.008371 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.186311 B = 3344.250103 C = 4740.199859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.318 6.318 4 C 0.146 3.854 5 C -0.284 4.284 6 C 0.131 3.869 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.073 3.927 10 N -0.777 5.777 11 Si 0.914 3.086 12 H -0.257 1.257 13 H -0.269 1.269 14 H -0.271 1.271 15 C -0.122 4.122 16 C -0.006 4.006 17 C 0.289 3.711 18 N -0.465 5.465 19 C -0.037 4.037 20 O -0.319 6.319 21 C 0.032 3.968 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.112 0.888 28 H 0.288 0.712 29 H 0.133 0.867 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -4.138 -3.152 8.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.232 6.232 4 C 0.101 3.899 5 C -0.305 4.305 6 C 0.128 3.872 7 C -0.471 4.471 8 H 0.106 0.894 9 C -0.147 4.147 10 N -0.401 5.401 11 Si 0.737 3.263 12 H -0.181 1.181 13 H -0.194 1.194 14 H -0.197 1.197 15 C -0.144 4.144 16 C -0.010 4.010 17 C -0.025 4.025 18 N -0.141 5.141 19 C -0.084 4.084 20 O -0.235 6.235 21 C -0.063 4.063 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.151 0.849 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.944 -2.177 -2.850 6.942 hybrid contribution 0.631 -1.269 -0.293 1.447 sum -5.314 -3.446 -3.143 7.070 Atomic orbital electron populations 1.21744 0.93819 1.02021 1.03002 1.22606 0.94684 0.83352 1.01291 1.86017 1.20091 1.27769 1.89333 1.18747 0.81246 0.92996 0.96926 1.21034 0.93958 0.95910 1.19616 1.17256 0.90534 0.92403 0.87017 1.19653 0.95947 0.97350 1.34131 0.89440 1.26043 0.99645 0.96651 0.92386 1.69822 1.21636 1.28221 1.20376 0.86152 0.79894 0.80675 0.79549 1.18076 1.19366 1.19656 1.21384 0.99162 0.90059 1.03823 1.15972 0.91610 0.85765 1.07699 1.25843 0.91820 0.92621 0.92197 1.81034 1.10227 1.11823 1.11057 1.17099 0.86214 0.83543 1.21540 1.86048 1.64884 1.45303 1.27233 1.22902 0.98414 0.97991 0.86990 0.91855 0.92043 0.91053 0.92545 0.92324 0.86989 0.90078 0.84902 0.95083 0.94247 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.06 0.85 5.45 37.16 0.20 1.05 16 3 O -0.32 -6.20 9.91 -34.37 -0.34 -6.54 16 4 C 0.15 3.17 6.69 -39.22 -0.26 2.91 16 5 C -0.28 -6.21 8.75 -38.75 -0.34 -6.54 16 6 C 0.13 3.10 5.57 -106.88 -0.60 2.51 16 7 C -0.44 -10.28 9.03 -37.83 -0.34 -10.62 16 8 H 0.09 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.07 1.64 5.13 -17.34 -0.09 1.55 16 10 N -0.78 -18.22 10.97 55.54 0.61 -17.61 16 11 Si 0.91 16.69 29.60 -169.99 -5.03 11.65 16 12 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 13 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 14 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 15 C -0.12 -2.91 8.38 -38.43 -0.32 -3.23 16 16 C -0.01 -0.14 5.74 -106.81 -0.61 -0.76 16 17 C 0.29 6.61 14.85 -22.47 -0.33 6.28 16 18 N -0.46 -10.70 18.54 41.84 0.78 -9.93 16 19 C -0.04 -0.83 5.76 -38.18 -0.22 -1.05 16 20 O -0.32 -6.94 9.60 -33.08 -0.32 -7.26 16 21 C 0.03 0.57 11.13 101.05 1.12 1.69 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 26 H 0.06 0.87 7.65 -51.92 -0.40 0.48 16 27 H 0.11 2.22 6.24 -52.49 -0.33 1.89 16 28 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 29 H 0.13 3.26 6.16 -52.48 -0.32 2.94 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -26.34 289.44 -4.88 -31.22 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.53 Total: 1.66 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.41 Total: -7.55 kcal Atomic # 7 Polarization: -28.92 SS G_CDS: 1.38 Total: -27.54 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.66 Total: -13.80 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.34 -4.88 -31.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.106 kcal (2) G-P(sol) polarization free energy of solvation -26.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds