Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47526 * 2 1 4 4 C 1.35972 * 117.00152 * 179.97438 * 3 2 1 5 5 C 1.37752 * 119.87161 * 0.02562 * 4 3 2 6 6 C 1.40903 * 120.10266 * 180.02562 * 5 4 3 7 7 C 1.41262 * 120.06575 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00258 * 24.68717 * 7 6 5 9 9 C 1.39856 * 119.99862 * 204.67866 * 7 6 5 10 10 N 1.30902 * 119.99537 * 18.00997 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 198.00058 * 9 7 6 12 12 H 1.48498 * 109.47148 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46755 * 120.00294 * 11 9 7 14 14 H 1.48497 * 109.47179 * 240.00199 * 11 9 7 15 15 C 1.40518 * 119.85765 * 359.97438 * 6 5 4 16 16 C 1.39037 * 119.75166 * 0.02562 * 15 6 5 17 17 C 1.43198 * 120.05422 * 180.02562 * 16 15 6 18 18 N 7.16078 * 131.24191 * 359.97438 * 2 1 3 19 19 C 1.39687 * 119.87284 * 180.27800 * 4 3 2 20 20 O 1.35555 * 119.92937 * 0.02562 * 19 4 3 21 21 C 1.42898 * 117.00093 * 270.27482 * 20 19 4 22 22 H 1.08998 * 109.46879 * 300.00048 * 1 2 3 23 23 H 1.08994 * 109.46771 * 59.99610 * 1 2 3 24 24 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47314 * 239.99845 * 2 1 3 26 26 H 1.09007 * 109.47089 * 120.00376 * 2 1 3 27 27 H 1.07993 * 119.95047 * 0.02562 * 5 4 3 28 28 H 0.96999 * 119.99967 * 179.97438 * 10 9 7 29 29 H 1.08007 * 120.12202 * 180.02562 * 15 6 5 30 30 H 1.09005 * 109.47316 * 300.00692 * 21 20 19 31 31 H 1.09002 * 109.46815 * 60.00316 * 21 20 19 32 32 H 1.08997 * 109.47399 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1911 0.4310 0.0005 6 6 5.5887 0.6099 0.0016 7 6 6.4459 -0.5129 0.0011 8 1 6.0985 -1.4574 -0.3907 9 6 7.7447 -0.4013 0.5077 10 7 8.0584 0.6009 1.2892 11 14 9.0315 -1.6825 0.0697 12 1 8.4283 -2.7051 -0.8222 13 1 10.1664 -1.0258 -0.6274 14 1 9.5230 -2.3347 1.3099 15 6 6.1279 1.9076 0.0022 16 6 5.2779 3.0079 0.0022 17 6 5.8203 4.3331 0.0023 18 7 6.2507 5.3844 -0.0024 19 6 3.8855 2.8173 0.0065 20 8 3.0561 3.8895 0.0122 21 6 2.6536 4.4051 -1.2583 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7752 -0.5656 -0.0003 28 1 8.9591 0.6782 1.6409 29 1 7.1985 2.0496 0.0026 30 1 3.5343 4.7189 -1.8187 31 1 2.1263 3.6299 -1.8144 32 1 1.9927 5.2592 -1.1110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -50.722120 kcal Electronic energy + Delta-G solvation = -17445.901776 eV Core-core repulsion = 14564.470674 eV Total energy + Delta-G solvation = -2881.431101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05956 -39.09174 -38.08512 -37.27233 -35.17358 -32.56674 -31.89492 -30.11634 -28.26340 -26.49862 -25.14489 -23.09828 -22.86111 -20.40020 -18.65050 -17.94881 -17.59931 -17.30153 -16.95581 -16.56416 -16.13498 -15.16833 -15.04904 -14.71406 -14.58810 -14.23408 -13.87142 -13.78297 -13.67460 -13.26827 -13.16914 -12.87523 -12.75764 -12.42338 -12.38553 -12.04572 -12.01191 -11.59152 -11.45485 -10.98364 -10.68819 -9.54068 -8.87282 -8.75996 -6.44338 0.09404 0.83198 1.43709 1.47550 1.59920 1.64396 2.07784 2.19847 2.42930 2.63598 3.11447 3.20221 3.56744 4.18476 4.26840 4.41741 4.49569 4.56828 4.63454 4.69239 4.74303 4.81832 4.94519 5.04005 5.05209 5.14694 5.22892 5.31585 5.67689 5.77064 5.97085 6.33676 6.47393 6.49086 6.67282 6.78327 7.06704 8.20372 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.008371 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.186311 B = 3344.250103 C = 4740.199859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 O -0.327 6.327 4 C 0.146 3.854 5 C -0.282 4.282 6 C 0.110 3.890 7 C -0.466 4.466 8 H 0.096 0.904 9 C 0.037 3.963 10 N -0.811 5.811 11 Si 0.984 3.016 12 H -0.250 1.250 13 H -0.268 1.268 14 H -0.267 1.267 15 C -0.139 4.139 16 C -0.013 4.013 17 C 0.292 3.708 18 N -0.470 5.470 19 C -0.042 4.042 20 O -0.336 6.336 21 C 0.030 3.970 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.131 0.869 28 H 0.294 0.706 29 H 0.119 0.881 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 -5.307 -3.645 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 O -0.241 6.241 4 C 0.100 3.900 5 C -0.303 4.303 6 C 0.107 3.893 7 C -0.494 4.494 8 H 0.114 0.886 9 C -0.181 4.181 10 N -0.435 5.435 11 Si 0.804 3.196 12 H -0.173 1.173 13 H -0.193 1.193 14 H -0.192 1.192 15 C -0.161 4.161 16 C -0.017 4.017 17 C -0.021 4.021 18 N -0.147 5.147 19 C -0.089 4.089 20 O -0.253 6.253 21 C -0.064 4.064 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.105 0.895 29 H 0.137 0.863 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.904 -3.342 -3.348 8.369 hybrid contribution 0.774 -0.863 -0.138 1.167 sum -6.130 -4.204 -3.486 8.210 Atomic orbital electron populations 1.21765 0.90957 1.04052 1.03066 1.22999 0.96940 0.81373 1.01731 1.86018 1.18551 1.30640 1.88928 1.18762 0.82435 0.92560 0.96224 1.21219 0.93342 0.96938 1.18783 1.17548 0.91612 0.92577 0.87595 1.19941 0.96898 0.97616 1.34913 0.88565 1.26864 1.01156 0.98426 0.91611 1.69875 1.22452 1.29957 1.21265 0.85103 0.77015 0.78132 0.79308 1.17264 1.19314 1.19193 1.21269 0.98564 0.90670 1.05629 1.16041 0.92053 0.85554 1.08058 1.25878 0.91626 0.92593 0.92001 1.81015 1.10395 1.11951 1.11364 1.17264 0.86176 0.84431 1.21065 1.85972 1.64663 1.45101 1.29584 1.23089 0.98823 0.99104 0.85430 0.92058 0.91706 0.88020 0.91704 0.92239 0.85159 0.89481 0.86316 0.95424 0.93421 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 10.28 71.98 0.74 -2.15 16 2 C 0.04 1.25 5.45 71.98 0.39 1.64 16 3 O -0.33 -12.32 9.91 -79.16 -0.78 -13.11 16 4 C 0.15 6.27 6.69 22.50 0.15 6.42 16 5 C -0.28 -12.20 8.75 22.81 0.20 -12.00 16 6 C 0.11 5.25 5.57 -21.33 -0.12 5.14 16 7 C -0.47 -21.64 9.03 23.41 0.21 -21.43 16 8 H 0.10 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.04 1.65 5.13 85.22 0.44 2.09 16 10 N -0.81 -38.60 10.97 21.81 0.24 -38.36 16 11 Si 0.98 33.66 29.60 68.60 2.03 35.69 16 12 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 13 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 14 H -0.27 -8.89 7.11 99.48 0.71 -8.18 16 15 C -0.14 -6.79 8.38 23.02 0.19 -6.60 16 16 C -0.01 -0.60 5.74 -21.28 -0.12 -0.72 16 17 C 0.29 13.53 14.85 88.33 1.31 14.84 16 18 N -0.47 -21.71 18.54 19.00 0.35 -21.35 16 19 C -0.04 -1.90 5.76 23.18 0.13 -1.76 16 20 O -0.34 -14.42 9.60 -74.53 -0.72 -15.14 16 21 C 0.03 1.02 11.13 113.37 1.26 2.28 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.71 7.65 -2.39 -0.02 1.70 16 26 H 0.06 1.66 7.65 -2.38 -0.02 1.64 16 27 H 0.13 5.01 6.24 -2.91 -0.02 4.99 16 28 H 0.29 12.68 8.30 -92.71 -0.77 11.91 16 29 H 0.12 6.06 6.16 -2.91 -0.02 6.04 16 30 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -55.86 289.44 7.05 -48.80 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.14 Total: 15.72 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.79 Total: -12.26 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.59 Total: -59.71 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.50 Total: -28.24 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Total: -55.86 7.05 -48.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.917 kcal (2) G-P(sol) polarization free energy of solvation -55.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds