Wall clock time and date at job start Mon Mar 30 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46719 * 2 1 4 4 C 1.35561 * 116.99970 * 179.97438 * 3 2 1 5 5 C 1.40536 * 119.92833 * 89.99831 * 4 3 2 6 6 C 1.43193 * 120.05381 * 359.97221 * 5 4 3 7 7 N 3.93463 * 108.39976 * 292.81196 * 2 1 3 8 8 C 1.39031 * 119.88854 * 179.70242 * 5 4 3 9 9 C 1.40521 * 119.75258 * 0.27589 * 8 5 4 10 10 C 1.41265 * 120.07559 * 179.97438 * 9 8 5 11 11 H 1.07994 * 120.00324 * 154.40785 * 10 9 8 12 12 C 1.39852 * 119.99803 * 334.40836 * 10 9 8 13 13 N 1.30901 * 120.00030 * 343.15927 * 12 10 9 14 14 Si 1.86807 * 120.00106 * 163.16059 * 12 10 9 15 15 H 1.48491 * 109.46909 * 59.99954 * 14 12 10 16 16 H 1.48497 * 109.47067 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46754 * 299.99894 * 14 12 10 18 18 C 1.40900 * 119.85656 * 0.02562 * 9 8 5 19 19 C 1.37745 * 120.10629 * 0.02562 * 18 9 8 20 20 O 1.35974 * 119.87169 * 179.97438 * 19 18 9 21 21 C 1.42897 * 117.00323 * 359.97438 * 20 19 18 22 22 H 1.08990 * 109.47246 * 300.00072 * 1 2 3 23 23 H 1.09007 * 109.46860 * 60.00372 * 1 2 3 24 24 H 1.08997 * 109.46561 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47521 * 240.00254 * 2 1 3 26 26 H 1.08997 * 109.47212 * 119.99226 * 2 1 3 27 27 H 1.07998 * 120.12742 * 180.25418 * 8 5 4 28 28 H 0.97004 * 119.99586 * 180.02562 * 13 12 10 29 29 H 1.08000 * 119.94223 * 180.02562 * 18 9 8 30 30 H 1.09002 * 109.46998 * 300.00256 * 21 20 19 31 31 H 1.09003 * 109.47137 * 59.99742 * 21 20 19 32 32 H 1.09000 * 109.47195 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3502 1.5250 0.0005 5 6 4.0458 1.6167 -1.2171 6 6 3.3362 1.5220 -2.4573 7 7 2.7720 1.4475 -3.4415 8 6 5.4233 1.8052 -1.2156 9 6 6.1132 1.8971 0.0051 10 6 7.5129 2.0881 0.0146 11 1 7.9879 2.5591 0.8624 12 6 8.2834 1.6671 -1.0740 13 7 7.7869 0.8183 -1.9380 14 14 10.0211 2.3160 -1.2949 15 1 10.8405 1.9491 -0.1121 16 1 10.6201 1.7210 -2.5165 17 1 9.9838 3.7942 -1.4320 18 6 5.4061 1.7974 1.2197 19 6 4.0415 1.6096 1.2114 20 8 3.3639 1.5135 2.3863 21 6 4.1308 1.6155 3.5878 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 5.9612 1.8803 -2.1491 28 1 8.3215 0.5261 -2.6929 29 1 5.9349 1.8683 2.1587 30 1 4.8747 0.8192 3.6127 31 1 4.6328 2.5826 3.6174 32 1 3.4701 1.5221 4.4496 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:17 Heat of formation + Delta-G solvation = -51.009305 kcal Electronic energy + Delta-G solvation = -17489.999732 eV Core-core repulsion = 14608.556177 eV Total energy + Delta-G solvation = -2881.443555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04431 -39.03266 -38.16649 -37.23298 -35.18784 -32.65224 -31.51615 -30.46910 -28.23611 -26.71087 -24.31521 -23.71015 -22.77519 -20.39358 -18.76258 -18.08963 -17.70465 -17.17778 -16.65457 -16.49594 -15.81375 -15.67969 -15.03014 -14.85489 -14.60836 -14.35597 -13.90806 -13.67176 -13.44471 -13.29076 -12.97181 -12.83258 -12.73115 -12.48495 -12.32089 -12.14142 -12.07278 -11.63319 -11.59663 -10.99913 -10.60748 -9.52664 -8.85967 -8.74757 -6.44582 0.09247 0.83590 1.43973 1.50050 1.56823 1.64641 2.07889 2.20388 2.52317 2.60761 3.05547 3.23205 3.57064 4.11980 4.34560 4.46232 4.49368 4.53597 4.55377 4.67523 4.80331 4.84066 4.90813 5.01262 5.03108 5.17381 5.22370 5.25152 5.67707 5.76856 5.97014 6.33266 6.47543 6.48988 6.68060 6.78738 7.07604 8.21176 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.007581 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.919802 B = 3692.360060 C = 4715.519853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 O -0.330 6.330 4 C -0.039 4.039 5 C -0.014 4.014 6 C 0.292 3.708 7 N -0.471 5.471 8 C -0.137 4.137 9 C 0.108 3.892 10 C -0.467 4.467 11 H 0.097 0.903 12 C 0.037 3.963 13 N -0.813 5.813 14 Si 0.985 3.015 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.259 1.259 18 C -0.280 4.280 19 C 0.143 3.857 20 O -0.330 6.330 21 C 0.023 3.977 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.094 0.906 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.294 0.706 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 -0.605 7.651 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 O -0.248 6.248 4 C -0.087 4.087 5 C -0.019 4.019 6 C -0.022 4.022 7 N -0.148 5.148 8 C -0.159 4.159 9 C 0.105 3.895 10 C -0.495 4.495 11 H 0.115 0.885 12 C -0.181 4.181 13 N -0.437 5.437 14 Si 0.805 3.195 15 H -0.178 1.178 16 H -0.198 1.198 17 H -0.183 1.183 18 C -0.301 4.301 19 C 0.097 3.903 20 O -0.244 6.244 21 C -0.072 4.072 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.105 0.895 29 H 0.151 0.849 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.751 -0.770 5.957 6.607 hybrid contribution 1.329 -0.090 0.039 1.333 sum -1.421 -0.861 5.996 6.222 Atomic orbital electron populations 1.21700 0.91586 1.03486 1.02722 1.22860 0.96787 0.83646 0.99311 1.86007 1.17899 1.26771 1.94093 1.17291 0.83074 1.19774 0.88512 1.16052 0.92437 1.08134 0.85257 1.25933 0.91618 0.92036 0.92579 1.81047 1.10407 1.11329 1.11968 1.21256 0.89409 1.05542 0.99716 1.17553 0.94053 0.87777 0.90084 1.19894 0.91596 1.33985 1.03986 0.88547 1.26844 1.05250 0.92267 0.93693 1.69856 1.40505 1.21928 1.11433 0.85181 0.75756 0.79615 0.78935 1.17763 1.19799 1.18287 1.21283 0.91891 1.17833 0.99055 1.18824 0.90346 0.96437 0.84702 1.86012 1.37395 1.88076 1.12919 1.23242 0.97705 1.01779 0.84443 0.91228 0.92911 0.88705 0.95483 0.93148 0.86321 0.89524 0.84935 0.92574 0.92371 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 10.28 71.98 0.74 -3.04 16 2 C 0.05 1.74 6.78 71.98 0.49 2.23 16 3 O -0.33 -14.18 9.24 -74.61 -0.69 -14.87 16 4 C -0.04 -1.76 5.76 23.18 0.13 -1.63 16 5 C -0.01 -0.68 5.74 -21.28 -0.12 -0.80 16 6 C 0.29 13.56 14.85 88.32 1.31 14.87 16 7 N -0.47 -21.81 18.54 19.01 0.35 -21.46 16 8 C -0.14 -6.70 8.37 23.02 0.19 -6.50 16 9 C 0.11 5.18 5.56 -21.33 -0.12 5.06 16 10 C -0.47 -21.63 9.03 23.40 0.21 -21.42 16 11 H 0.10 4.13 7.90 -2.91 -0.02 4.11 16 12 C 0.04 1.64 5.14 85.22 0.44 2.08 16 13 N -0.81 -38.49 10.96 21.81 0.24 -38.26 16 14 Si 0.98 33.66 29.59 68.60 2.03 35.69 16 15 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 16 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 17 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 18 C -0.28 -12.02 8.75 22.80 0.20 -11.82 16 19 C 0.14 6.09 6.69 22.50 0.15 6.24 16 20 O -0.33 -12.27 10.27 -79.19 -0.81 -13.08 16 21 C 0.02 0.60 9.81 113.37 1.11 1.71 16 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.12 6.07 6.18 -2.91 -0.02 6.05 16 28 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 29 H 0.13 5.01 6.24 -2.91 -0.02 4.99 16 30 H 0.06 1.42 7.65 -2.39 -0.02 1.40 16 31 H 0.06 1.45 7.65 -2.39 -0.02 1.43 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -55.79 289.46 6.99 -48.80 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.14 Total: 16.21 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.74 Total: -13.02 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.59 Total: -59.72 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.50 Total: -27.95 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Total: -55.79 6.99 -48.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.214 kcal (2) G-P(sol) polarization free energy of solvation -55.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds