Wall clock time and date at job start Mon Mar 30 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46983 * 2 1 4 4 C 1.35532 * 116.99380 * 179.97438 * 3 2 1 5 5 C 1.38179 * 120.00380 * 359.97438 * 4 3 2 6 6 C 1.38700 * 120.29795 * 179.70194 * 5 4 3 7 7 O 1.35518 * 119.85663 * 180.27657 * 6 5 4 8 8 C 1.42899 * 117.00109 * 0.02562 * 7 6 5 9 9 C 1.40880 * 120.28599 * 0.29491 * 6 5 4 10 10 C 1.43208 * 120.00601 * 179.97438 * 9 6 5 11 11 N 7.47296 * 162.79423 * 359.58021 * 2 1 3 12 12 C 1.38991 * 119.99105 * 359.97438 * 9 6 5 13 13 C 1.40399 * 119.70161 * 359.97438 * 12 9 6 14 14 C 1.41102 * 120.13910 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99808 * 204.88561 * 14 13 12 16 16 C 1.39852 * 119.99856 * 24.88119 * 14 13 12 17 17 N 1.30938 * 120.00249 * 17.83145 * 16 14 13 18 18 Si 1.86798 * 119.99965 * 197.82719 * 16 14 13 19 19 H 1.48499 * 109.47120 * 90.00165 * 18 16 14 20 20 H 1.48502 * 109.47252 * 210.00376 * 18 16 14 21 21 H 1.48506 * 109.47293 * 330.00318 * 18 16 14 22 22 H 1.09006 * 109.47264 * 299.99992 * 1 2 3 23 23 H 1.09001 * 109.47087 * 59.99569 * 1 2 3 24 24 H 1.08995 * 109.47503 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46907 * 240.00176 * 2 1 3 26 26 H 1.08994 * 109.46982 * 119.99732 * 2 1 3 27 27 H 1.08004 * 119.85024 * 359.97438 * 5 4 3 28 28 H 1.09004 * 109.47591 * 59.99770 * 8 7 6 29 29 H 1.09000 * 109.47515 * 180.02562 * 8 7 6 30 30 H 1.09007 * 109.47077 * 299.99978 * 8 7 6 31 31 H 1.07997 * 120.14825 * 180.02562 * 12 9 6 32 32 H 0.96997 * 119.99635 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3500 1.5248 0.0005 5 6 4.1917 0.4290 0.0016 6 6 5.5677 0.6035 -0.0041 7 8 6.3848 -0.4776 -0.0087 8 6 5.7604 -1.7629 -0.0079 9 6 6.1194 1.8998 -0.0047 10 6 7.5410 2.0730 -0.0100 11 7 8.6686 2.2105 -0.0162 12 6 5.2839 3.0105 -0.0002 13 6 3.8911 2.8333 0.0045 14 6 3.0343 3.9544 0.0086 15 1 2.0337 3.8678 0.4055 16 6 3.4809 5.1776 -0.5013 17 7 4.5288 5.2167 -1.2856 18 14 2.5826 6.7559 -0.0637 19 1 3.1739 7.3366 1.1685 20 1 2.7136 7.7260 -1.1804 21 1 1.1460 6.4597 0.1687 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7763 -0.5680 0.0024 28 1 5.1359 -1.8641 -0.8956 29 1 6.5259 -2.5388 -0.0114 30 1 5.1429 -1.8663 0.8844 31 1 5.7041 4.0053 -0.0010 32 1 4.8382 6.0651 -1.6395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:16 Heat of formation + Delta-G solvation = -49.124326 kcal Electronic energy + Delta-G solvation = -17461.543731 eV Core-core repulsion = 14580.181915 eV Total energy + Delta-G solvation = -2881.361816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12414 -39.57699 -37.98192 -37.00590 -35.08072 -32.65978 -31.14751 -30.90890 -28.43093 -26.53008 -24.70790 -23.53871 -22.33736 -20.11363 -19.27329 -18.39168 -17.51317 -17.03166 -16.82684 -16.37621 -15.92275 -15.29350 -15.16312 -14.71373 -14.62600 -14.19136 -13.91074 -13.70536 -13.56836 -13.21862 -13.07292 -12.77812 -12.65281 -12.51721 -12.34123 -12.07505 -11.95049 -11.76932 -11.50878 -11.14613 -10.80397 -9.34308 -8.91020 -8.54746 -6.13035 0.29506 0.84763 1.45229 1.49953 1.57611 1.82405 2.15759 2.28366 2.57759 2.65262 2.82193 3.27679 3.57627 4.10921 4.19549 4.30657 4.35264 4.49227 4.50383 4.59468 4.73662 4.77563 4.90349 5.06310 5.13172 5.26338 5.32208 5.35694 5.53669 5.73470 6.00429 6.39266 6.52151 6.65535 6.79737 6.92867 7.12393 8.41116 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.009961 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.926543 B = 2810.346077 C = 4558.465190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.321 6.321 4 C 0.093 3.907 5 C -0.258 4.258 6 C 0.102 3.898 7 O -0.341 6.341 8 C 0.022 3.978 9 C -0.094 4.094 10 C 0.299 3.701 11 N -0.492 5.492 12 C -0.083 4.083 13 C 0.036 3.964 14 C -0.472 4.472 15 H 0.079 0.921 16 C 0.034 3.966 17 N -0.834 5.834 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.258 1.258 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 -9.918 2.037 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.235 6.235 4 C 0.046 3.954 5 C -0.278 4.278 6 C 0.054 3.946 7 O -0.255 6.255 8 C -0.073 4.073 9 C -0.099 4.099 10 C -0.013 4.013 11 N -0.171 5.171 12 C -0.105 4.105 13 C 0.033 3.967 14 C -0.502 4.502 15 H 0.097 0.903 16 C -0.179 4.179 17 N -0.462 5.462 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.182 1.182 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.173 0.827 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.140 0.860 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.789 -9.444 1.879 11.235 hybrid contribution -0.615 0.521 -0.064 0.809 sum -6.404 -8.923 1.815 11.132 Atomic orbital electron populations 1.21771 0.91559 1.03967 1.02864 1.23016 0.96938 0.81847 1.01601 1.85995 1.18980 1.29981 1.88508 1.19263 0.82202 0.93315 1.00619 1.20870 0.91524 0.99070 1.16290 1.18195 0.88641 0.84906 1.02874 1.85891 1.35712 1.14381 1.89529 1.23265 1.00468 0.81444 1.02087 1.15359 0.83734 0.92474 1.18357 1.25905 0.92822 0.91268 0.91313 1.80998 1.12729 1.10090 1.13240 1.20863 0.91927 0.95852 1.01905 1.17112 0.91815 0.90705 0.97055 1.19409 1.00554 0.93825 1.36442 0.90282 1.26602 0.95615 1.03631 0.92080 1.69863 1.23626 1.29263 1.23413 0.85283 0.79555 0.76710 0.78721 1.18970 1.19813 1.18194 0.92133 0.92401 0.87757 0.91869 0.91478 0.82748 0.92049 0.86579 0.91760 0.85979 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.04 1.10 5.45 71.98 0.39 1.49 16 3 O -0.32 -12.70 9.39 -88.35 -0.83 -13.53 16 4 C 0.09 4.07 6.72 23.09 0.16 4.22 16 5 C -0.26 -9.70 7.99 22.37 0.18 -9.53 16 6 C 0.10 4.18 6.71 23.03 0.15 4.33 16 7 O -0.34 -12.37 9.90 -88.21 -0.87 -13.24 16 8 C 0.02 0.51 9.80 113.37 1.11 1.62 16 9 C -0.09 -4.38 5.75 -21.20 -0.12 -4.50 16 10 C 0.30 14.01 14.84 88.33 1.31 15.32 16 11 N -0.49 -23.32 18.54 19.01 0.35 -22.97 16 12 C -0.08 -4.16 8.37 22.98 0.19 -3.97 16 13 C 0.04 1.79 5.58 -21.22 -0.12 1.68 16 14 C -0.47 -24.23 8.70 23.36 0.20 -24.03 16 15 H 0.08 4.01 7.64 -2.91 -0.02 3.99 16 16 C 0.03 1.66 5.13 85.22 0.44 2.10 16 17 N -0.83 -42.74 10.97 21.82 0.24 -42.50 16 18 Si 0.98 37.80 29.59 68.60 2.03 39.83 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.54 7.65 -2.39 -0.02 1.53 16 26 H 0.07 1.58 7.64 -2.39 -0.02 1.56 16 27 H 0.16 4.48 4.43 -2.91 -0.01 4.47 16 28 H 0.06 1.30 7.64 -2.39 -0.02 1.28 16 29 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.32 7.64 -2.38 -0.02 1.30 16 31 H 0.12 6.52 6.17 -2.91 -0.02 6.50 16 32 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 Total: -1.00 -61.11 284.73 6.70 -54.41 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.15 Total: 11.55 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.64 Total: -13.55 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.59 Total: -65.47 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.70 Total: -26.77 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -61.11 6.70 -54.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.288 kcal (2) G-P(sol) polarization free energy of solvation -61.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds