Wall clock time and date at job start Mon Mar 30 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46663 * 2 1 4 4 C 1.35705 * 116.99717 * 180.02562 * 3 2 1 5 5 C 1.37776 * 120.08961 * 0.02562 * 4 3 2 6 6 C 1.40006 * 120.17634 * 180.02562 * 5 4 3 7 7 C 1.43200 * 119.82594 * 179.97438 * 6 5 4 8 8 N 5.78504 * 165.70572 * 179.97438 * 2 1 3 9 9 C 1.40041 * 120.35345 * 0.02562 * 6 5 4 10 10 C 1.37742 * 120.17997 * 359.96642 * 9 6 5 11 11 O 1.35698 * 120.09231 * 179.97438 * 10 9 6 12 12 C 1.42900 * 116.99970 * 359.97438 * 11 10 9 13 13 C 1.41489 * 120.09097 * 180.25722 * 4 3 2 14 14 C 1.40564 * 120.17347 * 359.97438 * 13 4 3 15 15 H 1.08004 * 119.99509 * 39.16101 * 14 13 4 16 16 C 1.40198 * 120.00326 * 219.15107 * 14 13 4 17 17 N 1.30737 * 119.99504 * 20.29476 * 16 14 13 18 18 Si 1.86794 * 120.00122 * 200.29160 * 16 14 13 19 19 H 1.48490 * 109.47350 * 60.00305 * 18 16 14 20 20 H 1.48508 * 109.47026 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47130 * 299.99782 * 18 16 14 22 22 H 1.08999 * 109.46669 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47229 * 299.99644 * 1 2 3 24 24 H 1.08999 * 109.47212 * 60.00051 * 1 2 3 25 25 H 1.09003 * 109.47335 * 240.00593 * 2 1 3 26 26 H 1.08993 * 109.47584 * 120.00199 * 2 1 3 27 27 H 1.07997 * 119.91429 * 0.04154 * 5 4 3 28 28 H 1.07999 * 119.91632 * 179.97438 * 9 6 5 29 29 H 1.09002 * 109.46685 * 180.02562 * 12 11 10 30 30 H 1.08994 * 109.47601 * 59.99835 * 12 11 10 31 31 H 1.08998 * 109.46831 * 299.99684 * 12 11 10 32 32 H 0.96998 * 119.99521 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 -0.0005 5 6 4.1926 0.4339 -0.0016 6 6 5.5809 0.6153 -0.0016 7 6 6.4481 -0.5243 -0.0021 8 7 7.1360 -1.4283 0.0006 9 6 6.1261 1.9052 0.0000 10 6 5.2988 3.0066 0.0009 11 8 5.8290 4.2557 0.0029 12 6 7.2545 4.3555 0.0047 13 6 3.8945 2.8318 0.0049 14 6 3.0433 3.9504 0.0104 15 1 2.1395 3.9384 0.6016 16 6 3.3677 5.0819 -0.7514 17 7 4.2058 4.9795 -1.7495 18 14 2.6023 6.7354 -0.3402 19 1 2.9690 7.1196 1.0465 20 1 3.1043 7.7626 -1.2880 21 1 1.1247 6.6387 -0.4528 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7800 -0.5641 -0.0027 28 1 7.1980 2.0370 0.0004 29 1 7.5451 5.4060 0.0067 30 1 7.6539 3.8693 -0.8854 31 1 7.6517 3.8672 0.8945 32 1 4.4299 5.7622 -2.2768 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:25 Heat of formation + Delta-G solvation = -27.305999 kcal Electronic energy + Delta-G solvation = -17650.661755 eV Core-core repulsion = 14770.246053 eV Total energy + Delta-G solvation = -2880.415702 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.21035 -37.84494 -36.14942 -34.82411 -33.68769 -31.30673 -29.97445 -28.24730 -26.54500 -25.70254 -23.24674 -21.68016 -20.40478 -18.58758 -17.59346 -15.77786 -15.67612 -15.36109 -15.19276 -14.94552 -14.51959 -14.24862 -13.32864 -12.97565 -12.65074 -12.58819 -12.40367 -12.27317 -11.98022 -11.87155 -11.52136 -11.23656 -11.15493 -10.88985 -10.68701 -10.59641 -10.35641 -10.29788 -9.73599 -9.46882 -9.10371 -7.28550 -7.05571 -6.87102 -4.36897 2.00376 2.77414 3.03793 3.06036 3.11095 3.56455 3.87805 3.94176 4.01069 4.64150 4.74276 5.06606 5.26599 5.39879 5.50570 5.69519 5.81789 5.87742 5.92897 5.99546 6.09572 6.16212 6.19773 6.32349 6.57770 6.61251 6.99249 7.13030 7.35016 7.56827 7.59889 7.99939 8.31364 8.44738 8.57265 8.72011 8.93866 10.06889 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.010481 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.059960 B = 2670.963683 C = 4268.455981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.302 6.302 4 C 0.039 3.961 5 C -0.145 4.145 6 C -0.129 4.129 7 C 0.289 3.711 8 N -0.502 5.502 9 C -0.153 4.153 10 C 0.080 3.920 11 O -0.277 6.277 12 C 0.032 3.968 13 C 0.108 3.892 14 C -0.422 4.422 15 H 0.090 0.910 16 C 0.084 3.916 17 N -0.748 5.748 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 0.635 1.696 3.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.217 6.217 4 C -0.006 4.006 5 C -0.167 4.167 6 C -0.135 4.135 7 C -0.021 4.021 8 N -0.181 5.181 9 C -0.175 4.175 10 C 0.034 3.966 11 O -0.190 6.190 12 C -0.065 4.065 13 C 0.103 3.897 14 C -0.449 4.449 15 H 0.108 0.892 16 C -0.139 4.139 17 N -0.370 5.370 18 Si 0.734 3.266 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.190 1.190 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.060 -0.299 1.488 2.559 hybrid contribution -0.035 0.665 -0.025 0.666 sum -2.095 0.366 1.463 2.581 Atomic orbital electron populations 1.21717 0.93933 1.01666 1.03207 1.22515 0.94892 0.84269 1.00303 1.85989 1.19585 1.25982 1.90126 1.18365 0.81274 0.92599 1.08399 1.20451 0.91979 0.96814 1.07437 1.14740 0.89552 0.86723 1.22519 1.26059 0.92283 0.92509 0.91288 1.81075 1.10500 1.11442 1.15096 1.20494 0.97852 0.91147 1.08030 1.18401 0.91518 0.82405 1.04302 1.86182 1.18920 1.25044 1.88831 1.22765 0.82369 1.01591 0.99774 1.16249 0.89097 0.90219 0.94112 1.19312 1.06733 0.96631 1.22182 0.89202 1.25821 0.94045 1.00698 0.93373 1.69653 1.24058 1.32413 1.10862 0.86322 0.80008 0.80498 0.79745 1.18638 1.20371 1.19027 0.91454 0.91884 0.91783 0.93188 0.93273 0.87654 0.87631 0.90152 0.93999 0.94408 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 37.16 0.38 -1.53 16 2 C 0.06 0.91 5.46 37.16 0.20 1.11 16 3 O -0.30 -6.39 9.57 -18.82 -0.18 -6.57 16 4 C 0.04 0.88 6.71 -38.51 -0.26 0.62 16 5 C -0.15 -3.06 8.72 -39.09 -0.34 -3.40 16 6 C -0.13 -2.78 5.75 -106.63 -0.61 -3.39 16 7 C 0.29 6.11 15.31 -22.47 -0.34 5.77 16 8 N -0.50 -10.94 18.54 41.84 0.78 -10.16 16 9 C -0.15 -3.32 8.72 -39.09 -0.34 -3.66 16 10 C 0.08 1.87 6.16 -38.51 -0.24 1.63 16 11 O -0.28 -6.21 7.38 -18.80 -0.14 -6.35 16 12 C 0.03 0.54 9.81 101.05 0.99 1.53 16 13 C 0.11 2.65 5.38 -106.53 -0.57 2.08 16 14 C -0.42 -10.42 8.39 -37.97 -0.32 -10.74 16 15 H 0.09 2.18 7.91 -52.48 -0.42 1.76 16 16 C 0.08 1.97 4.39 -17.28 -0.08 1.89 16 17 N -0.75 -18.01 11.25 55.56 0.63 -17.39 16 18 Si 0.91 17.79 29.61 -169.99 -5.03 12.76 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 26 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 27 H 0.11 1.98 6.26 -52.49 -0.33 1.65 16 28 H 0.11 2.07 6.26 -52.49 -0.33 1.74 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 31 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 32 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 LS Contribution 284.63 15.07 4.29 4.29 Total: -1.00 -27.04 284.63 -4.67 -31.71 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.49 Total: -0.21 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.53 Total: -8.08 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 1.40 Total: -27.55 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.32 Total: -12.91 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.04 -4.67 -31.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.405 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds