Wall clock time and date at job start Mon Mar 30 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46663 * 2 1 4 4 C 1.35705 * 116.99717 * 180.02562 * 3 2 1 5 5 C 1.37776 * 120.08961 * 0.02562 * 4 3 2 6 6 C 1.40006 * 120.17634 * 180.02562 * 5 4 3 7 7 C 1.43200 * 119.82594 * 179.97438 * 6 5 4 8 8 N 5.78504 * 165.70572 * 179.97438 * 2 1 3 9 9 C 1.40041 * 120.35345 * 0.02562 * 6 5 4 10 10 C 1.37742 * 120.17997 * 359.96642 * 9 6 5 11 11 O 1.35698 * 120.09231 * 179.97438 * 10 9 6 12 12 C 1.42900 * 116.99970 * 359.97438 * 11 10 9 13 13 C 1.41489 * 120.09097 * 180.25722 * 4 3 2 14 14 C 1.40564 * 120.17347 * 359.97438 * 13 4 3 15 15 H 1.08004 * 119.99509 * 39.16101 * 14 13 4 16 16 C 1.40198 * 120.00326 * 219.15107 * 14 13 4 17 17 N 1.30737 * 119.99504 * 20.29476 * 16 14 13 18 18 Si 1.86794 * 120.00122 * 200.29160 * 16 14 13 19 19 H 1.48490 * 109.47350 * 60.00305 * 18 16 14 20 20 H 1.48508 * 109.47026 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47130 * 299.99782 * 18 16 14 22 22 H 1.08999 * 109.46669 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47229 * 299.99644 * 1 2 3 24 24 H 1.08999 * 109.47212 * 60.00051 * 1 2 3 25 25 H 1.09003 * 109.47335 * 240.00593 * 2 1 3 26 26 H 1.08993 * 109.47584 * 120.00199 * 2 1 3 27 27 H 1.07997 * 119.91429 * 0.04154 * 5 4 3 28 28 H 1.07999 * 119.91632 * 179.97438 * 9 6 5 29 29 H 1.09002 * 109.46685 * 180.02562 * 12 11 10 30 30 H 1.08994 * 109.47601 * 59.99835 * 12 11 10 31 31 H 1.08998 * 109.46831 * 299.99684 * 12 11 10 32 32 H 0.96998 * 119.99521 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5252 -0.0005 5 6 4.1926 0.4339 -0.0016 6 6 5.5809 0.6153 -0.0016 7 6 6.4481 -0.5243 -0.0021 8 7 7.1360 -1.4283 0.0006 9 6 6.1261 1.9052 0.0000 10 6 5.2988 3.0066 0.0009 11 8 5.8290 4.2557 0.0029 12 6 7.2545 4.3555 0.0047 13 6 3.8945 2.8318 0.0049 14 6 3.0433 3.9504 0.0104 15 1 2.1395 3.9384 0.6016 16 6 3.3677 5.0819 -0.7514 17 7 4.2058 4.9795 -1.7495 18 14 2.6023 6.7354 -0.3402 19 1 2.9690 7.1196 1.0465 20 1 3.1043 7.7626 -1.2880 21 1 1.1247 6.6387 -0.4528 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7800 -0.5641 -0.0027 28 1 7.1980 2.0370 0.0004 29 1 7.5451 5.4060 0.0067 30 1 7.6539 3.8693 -0.8854 31 1 7.6517 3.8672 0.8945 32 1 4.4299 5.7622 -2.2768 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:25 Heat of formation + Delta-G solvation = -41.818296 kcal Electronic energy + Delta-G solvation = -17651.291055 eV Core-core repulsion = 14770.246053 eV Total energy + Delta-G solvation = -2881.045003 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86109 -39.42320 -37.85029 -36.47856 -35.40891 -32.68825 -31.55329 -29.90516 -28.02621 -27.41331 -24.64374 -23.30624 -21.97145 -20.22629 -19.34009 -17.43311 -17.26144 -16.91474 -16.68050 -16.55608 -16.05418 -15.87125 -14.87265 -14.63925 -14.23438 -14.20169 -13.86571 -13.67935 -13.53240 -13.18908 -13.00544 -12.83799 -12.66362 -12.49586 -12.25155 -12.06283 -11.87509 -11.68603 -11.37434 -11.04998 -10.81110 -9.01998 -8.73411 -8.57658 -6.16403 0.26906 1.05620 1.46632 1.51146 1.57387 1.84081 2.20253 2.31675 2.51726 2.91490 3.26722 3.33040 3.54531 4.21288 4.25896 4.36730 4.42245 4.51024 4.54423 4.58310 4.79727 4.82466 4.89074 4.98983 5.07830 5.25334 5.31178 5.45547 5.62826 5.83276 5.95714 6.27142 6.54091 6.72038 6.85904 7.09238 7.27191 8.38838 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.010481 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.059960 B = 2670.963683 C = 4268.455981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 O -0.324 6.324 4 C 0.032 3.968 5 C -0.146 4.146 6 C -0.124 4.124 7 C 0.300 3.700 8 N -0.506 5.506 9 C -0.157 4.157 10 C 0.071 3.929 11 O -0.299 6.299 12 C 0.024 3.976 13 C 0.074 3.926 14 C -0.457 4.457 15 H 0.079 0.921 16 C 0.053 3.947 17 N -0.779 5.779 18 Si 0.970 3.030 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.264 1.264 22 H 0.101 0.899 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 0.211 1.903 3.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 O -0.239 6.239 4 C -0.013 4.013 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.010 4.010 8 N -0.185 5.185 9 C -0.179 4.179 10 C 0.025 3.975 11 O -0.212 6.212 12 C -0.072 4.072 13 C 0.070 3.930 14 C -0.484 4.484 15 H 0.097 0.903 16 C -0.167 4.167 17 N -0.402 5.402 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.188 1.188 22 H 0.119 0.881 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.962 -0.742 1.695 2.697 hybrid contribution -0.006 0.625 -0.070 0.629 sum -1.968 -0.116 1.625 2.555 Atomic orbital electron populations 1.21745 0.91502 1.03769 1.02905 1.22903 0.96894 0.82229 1.01042 1.85975 1.18799 1.29146 1.89972 1.18537 0.82316 0.92569 1.07870 1.20647 0.91732 0.97546 1.06847 1.14887 0.89852 0.86831 1.21381 1.25864 0.91972 0.92186 0.90998 1.81096 1.10709 1.11637 1.15067 1.20683 0.98779 0.90765 1.07647 1.18551 0.91504 0.83283 1.04208 1.86138 1.21567 1.24750 1.88757 1.23042 0.80036 1.03526 1.00555 1.16705 0.90127 0.91189 0.94977 1.19389 1.07131 0.98148 1.23779 0.90282 1.26436 0.94338 1.03186 0.92751 1.69681 1.25523 1.33343 1.11630 0.85417 0.79177 0.76820 0.79369 1.18799 1.19286 1.18822 0.88082 0.91963 0.92334 0.92628 0.92134 0.85334 0.85687 0.87778 0.93739 0.92886 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 10.28 71.98 0.74 -2.68 16 2 C 0.04 1.38 5.46 71.98 0.39 1.77 16 3 O -0.32 -13.76 9.57 -90.26 -0.86 -14.62 16 4 C 0.03 1.49 6.71 22.96 0.15 1.64 16 5 C -0.15 -6.02 8.72 22.59 0.20 -5.82 16 6 C -0.12 -5.14 5.75 -21.17 -0.12 -5.26 16 7 C 0.30 12.08 15.31 88.33 1.35 13.43 16 8 N -0.51 -20.93 18.54 19.00 0.35 -20.57 16 9 C -0.16 -6.64 8.72 22.59 0.20 -6.45 16 10 C 0.07 3.33 6.16 22.96 0.14 3.47 16 11 O -0.30 -13.36 7.38 -90.18 -0.67 -14.03 16 12 C 0.02 0.79 9.81 113.37 1.11 1.91 16 13 C 0.07 3.72 5.38 -21.10 -0.11 3.61 16 14 C -0.46 -23.26 8.39 23.31 0.20 -23.06 16 15 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 16 C 0.05 2.52 4.39 85.33 0.37 2.90 16 17 N -0.78 -37.98 11.25 21.87 0.25 -37.73 16 18 Si 0.97 36.73 29.61 68.60 2.03 38.77 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.64 7.65 -2.39 -0.02 1.63 16 26 H 0.06 1.72 7.66 -2.39 -0.02 1.70 16 27 H 0.13 4.58 6.26 -2.91 -0.02 4.57 16 28 H 0.13 4.68 6.26 -2.91 -0.02 4.67 16 29 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.04 1.43 7.65 -2.39 -0.02 1.41 16 31 H 0.05 1.57 7.66 -2.39 -0.02 1.56 16 32 H 0.29 12.89 8.29 -92.71 -0.77 12.13 16 Total: -1.00 -57.57 284.63 6.86 -50.71 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.14 Total: 12.02 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.62 Total: -14.54 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.60 Total: -58.31 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.53 Total: -28.65 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.77 kcal Total: -57.57 6.86 -50.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.890 kcal (2) G-P(sol) polarization free energy of solvation -57.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds