Wall clock time and date at job start Mon Mar 30 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47501 * 2 1 4 4 C 1.35794 * 117.00274 * 184.87264 * 3 2 1 5 5 C 1.37630 * 119.93488 * 354.70393 * 4 3 2 6 6 C 1.40783 * 119.91660 * 179.72229 * 5 4 3 7 7 C 1.40764 * 120.10147 * 180.29701 * 6 5 4 8 8 H 1.07994 * 120.00773 * 150.98866 * 7 6 5 9 9 C 1.40174 * 119.99571 * 330.99459 * 7 6 5 10 10 N 1.30712 * 119.99686 * 161.35160 * 9 7 6 11 11 Si 1.86798 * 120.00247 * 341.35199 * 9 7 6 12 12 H 1.48508 * 109.46964 * 91.17006 * 11 9 7 13 13 H 1.48493 * 109.47131 * 211.17154 * 11 9 7 14 14 H 1.48507 * 109.47003 * 331.17517 * 11 9 7 15 15 C 1.41617 * 119.80571 * 0.57351 * 6 5 4 16 16 O 1.35703 * 120.06024 * 179.69845 * 15 6 5 17 17 C 1.42902 * 116.99909 * 179.72352 * 16 15 6 18 18 C 1.37810 * 119.87229 * 359.42378 * 15 6 5 19 19 C 1.39949 * 120.07963 * 0.30081 * 18 15 6 20 20 C 1.43204 * 119.89959 * 179.97438 * 19 18 15 21 21 N 4.91869 * 98.99499 * 357.16267 * 2 1 3 22 22 H 1.09000 * 109.47336 * 59.99859 * 1 2 3 23 23 H 1.09000 * 109.47567 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47092 * 299.99689 * 1 2 3 25 25 H 1.09008 * 109.46792 * 239.99504 * 2 1 3 26 26 H 1.09000 * 109.47336 * 120.00141 * 2 1 3 27 27 H 1.08000 * 120.04126 * 359.97438 * 5 4 3 28 28 H 0.97006 * 120.00235 * 179.97438 * 10 9 7 29 29 H 1.09007 * 109.46889 * 60.00264 * 17 16 15 30 30 H 1.09002 * 109.46953 * 300.00750 * 17 16 15 31 31 H 1.08999 * 109.47342 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.95735 * 180.27418 * 18 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3485 1.5265 -0.1028 5 6 4.1898 0.4374 -0.0909 6 6 5.5808 0.6234 -0.2033 7 6 6.4444 -0.4881 -0.1979 8 1 7.3861 -0.4430 -0.7246 9 6 6.0820 -1.6537 0.4913 10 7 6.6721 -2.7867 0.2144 11 14 4.7560 -1.5879 1.8053 12 1 3.4342 -1.8687 1.1891 13 1 5.0420 -2.6051 2.8485 14 1 4.7374 -0.2373 2.4225 15 6 6.1091 1.9325 -0.3161 16 8 7.4494 2.1182 -0.4186 17 6 7.9107 3.4656 -0.5351 18 6 5.2590 3.0172 -0.3272 19 6 3.8767 2.8261 -0.2209 20 6 2.9969 3.9559 -0.2323 21 7 2.2990 4.8522 -0.2405 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5140 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7832 -0.5589 0.0005 28 1 6.4216 -3.5934 0.6915 29 1 7.6029 4.0323 0.3437 30 1 7.4828 3.9201 -1.4287 31 1 8.9982 3.4723 -0.6088 32 1 5.6601 4.0158 -0.4175 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:40 Heat of formation + Delta-G solvation = -34.837726 kcal Electronic energy + Delta-G solvation = -17635.454590 eV Core-core repulsion = 14754.712288 eV Total energy + Delta-G solvation = -2880.742302 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57070 -38.26244 -36.02356 -35.34116 -33.80835 -31.57164 -30.78674 -28.36713 -26.69217 -26.05926 -23.33621 -21.87683 -20.64183 -18.58019 -18.06986 -16.90287 -15.80755 -15.69284 -15.53654 -14.88968 -14.79516 -14.02327 -13.38021 -13.29048 -13.13781 -12.87867 -12.37000 -12.34945 -12.13177 -12.03327 -11.71274 -11.49261 -11.28129 -11.15741 -10.88220 -10.78883 -10.58511 -10.13795 -9.96573 -9.64085 -9.25857 -8.01905 -7.35583 -7.03346 -4.77144 1.86317 2.49096 2.83036 3.00243 3.09498 3.65014 3.67176 3.74861 3.77073 4.23913 4.45161 5.07961 5.09652 5.22319 5.28583 5.54977 5.61001 5.67394 5.69416 5.79147 5.94520 6.02248 6.11834 6.21434 6.39000 6.46620 6.68222 6.78531 7.02994 7.35630 7.51133 7.84334 7.98521 8.09721 8.37241 8.51379 8.62262 9.62697 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.012491 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.083541 B = 2241.147160 C = 3924.078681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.322 6.322 4 C 0.205 3.795 5 C -0.330 4.330 6 C 0.121 3.879 7 C -0.389 4.389 8 H 0.106 0.894 9 C 0.080 3.920 10 N -0.772 5.772 11 Si 0.914 3.086 12 H -0.263 1.263 13 H -0.286 1.286 14 H -0.239 1.239 15 C 0.016 3.984 16 O -0.306 6.306 17 C 0.030 3.970 18 C -0.104 4.104 19 C -0.187 4.187 20 C 0.297 3.703 21 N -0.501 5.501 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.294 0.706 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 0.295 0.932 2.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.236 6.236 4 C 0.158 3.842 5 C -0.350 4.350 6 C 0.116 3.884 7 C -0.415 4.415 8 H 0.124 0.876 9 C -0.144 4.144 10 N -0.393 5.393 11 Si 0.739 3.261 12 H -0.189 1.189 13 H -0.213 1.213 14 H -0.162 1.162 15 C -0.028 4.028 16 O -0.220 6.220 17 C -0.066 4.066 18 C -0.125 4.125 19 C -0.194 4.194 20 C -0.013 4.013 21 N -0.181 5.181 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.220 1.367 0.941 3.623 hybrid contribution -0.144 -0.527 0.490 0.734 sum -3.364 0.840 1.432 3.751 Atomic orbital electron populations 1.21763 0.93497 1.02265 1.03151 1.22797 0.95066 0.82721 1.01815 1.85956 1.20872 1.28597 1.88183 1.18463 0.80913 0.92478 0.92384 1.20670 0.92926 0.96645 1.24749 1.16924 0.91060 0.90116 0.90326 1.19676 1.04870 0.93337 1.23614 0.87566 1.26435 0.96360 0.93952 0.97690 1.69624 1.35722 1.00081 1.33901 0.86309 0.79591 0.80525 0.79643 1.18935 1.21280 1.16193 1.18745 0.81572 0.93059 1.09467 1.86020 1.20142 1.26402 1.89466 1.22842 0.99732 0.83794 1.00201 1.20315 0.90940 0.97190 1.04079 1.14291 0.89783 0.84836 1.30467 1.25638 0.92198 0.92280 0.91199 1.81044 1.09888 1.11775 1.15380 0.91757 0.90801 0.91860 0.91807 0.92283 0.85960 0.89503 0.93738 0.93763 0.89506 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 37.16 0.38 -1.55 16 2 C 0.05 0.85 5.46 37.16 0.20 1.06 16 3 O -0.32 -6.52 9.55 -19.10 -0.18 -6.71 16 4 C 0.21 4.45 6.67 -38.85 -0.26 4.19 16 5 C -0.33 -7.28 6.23 -38.84 -0.24 -7.53 16 6 C 0.12 2.80 5.14 -106.69 -0.55 2.25 16 7 C -0.39 -9.48 9.18 -37.90 -0.35 -9.83 16 8 H 0.11 2.75 7.87 -52.49 -0.41 2.33 16 9 C 0.08 1.85 5.40 -17.30 -0.09 1.76 16 10 N -0.77 -18.15 13.92 55.56 0.77 -17.38 16 11 Si 0.91 18.51 24.36 -169.99 -4.14 14.37 16 12 H -0.26 -4.95 5.39 56.52 0.30 -4.64 16 13 H -0.29 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.24 -5.08 7.04 56.52 0.40 -4.68 16 15 C 0.02 0.35 6.71 -38.45 -0.26 0.09 16 16 O -0.31 -6.23 9.81 -18.81 -0.18 -6.41 16 17 C 0.03 0.45 9.81 101.05 0.99 1.44 16 18 C -0.10 -2.10 8.72 -39.10 -0.34 -2.44 16 19 C -0.19 -4.01 5.77 -106.37 -0.61 -4.63 16 20 C 0.30 6.44 14.84 -22.47 -0.33 6.11 16 21 N -0.50 -11.20 18.54 41.84 0.78 -10.42 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.03 7.61 -51.92 -0.39 0.64 16 26 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 27 H 0.12 2.60 2.79 -52.49 -0.15 2.46 16 28 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 29 H 0.04 0.61 7.66 -51.92 -0.40 0.21 16 30 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.12 2.03 6.26 -52.49 -0.33 1.71 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -26.58 277.02 -3.58 -30.16 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.34 Total: 1.29 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.46 Total: -9.07 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 1.55 Total: -27.81 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.37 Total: -13.12 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.14 Total: 14.37 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.58 -3.58 -30.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.674 kcal (2) G-P(sol) polarization free energy of solvation -26.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds