Wall clock time and date at job start Mon Mar 30 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47501 * 2 1 4 4 C 1.35794 * 117.00274 * 184.87264 * 3 2 1 5 5 C 1.37630 * 119.93488 * 354.70393 * 4 3 2 6 6 C 1.40783 * 119.91660 * 179.72229 * 5 4 3 7 7 C 1.40764 * 120.10147 * 180.29701 * 6 5 4 8 8 H 1.07994 * 120.00773 * 150.98866 * 7 6 5 9 9 C 1.40174 * 119.99571 * 330.99459 * 7 6 5 10 10 N 1.30712 * 119.99686 * 161.35160 * 9 7 6 11 11 Si 1.86798 * 120.00247 * 341.35199 * 9 7 6 12 12 H 1.48508 * 109.46964 * 91.17006 * 11 9 7 13 13 H 1.48493 * 109.47131 * 211.17154 * 11 9 7 14 14 H 1.48507 * 109.47003 * 331.17517 * 11 9 7 15 15 C 1.41617 * 119.80571 * 0.57351 * 6 5 4 16 16 O 1.35703 * 120.06024 * 179.69845 * 15 6 5 17 17 C 1.42902 * 116.99909 * 179.72352 * 16 15 6 18 18 C 1.37810 * 119.87229 * 359.42378 * 15 6 5 19 19 C 1.39949 * 120.07963 * 0.30081 * 18 15 6 20 20 C 1.43204 * 119.89959 * 179.97438 * 19 18 15 21 21 N 4.91869 * 98.99499 * 357.16267 * 2 1 3 22 22 H 1.09000 * 109.47336 * 59.99859 * 1 2 3 23 23 H 1.09000 * 109.47567 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47092 * 299.99689 * 1 2 3 25 25 H 1.09008 * 109.46792 * 239.99504 * 2 1 3 26 26 H 1.09000 * 109.47336 * 120.00141 * 2 1 3 27 27 H 1.08000 * 120.04126 * 359.97438 * 5 4 3 28 28 H 0.97006 * 120.00235 * 179.97438 * 10 9 7 29 29 H 1.09007 * 109.46889 * 60.00264 * 17 16 15 30 30 H 1.09002 * 109.46953 * 300.00750 * 17 16 15 31 31 H 1.08999 * 109.47342 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.95735 * 180.27418 * 18 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3485 1.5265 -0.1028 5 6 4.1898 0.4374 -0.0909 6 6 5.5808 0.6234 -0.2033 7 6 6.4444 -0.4881 -0.1979 8 1 7.3861 -0.4430 -0.7246 9 6 6.0820 -1.6537 0.4913 10 7 6.6721 -2.7867 0.2144 11 14 4.7560 -1.5879 1.8053 12 1 3.4342 -1.8687 1.1891 13 1 5.0420 -2.6051 2.8485 14 1 4.7374 -0.2373 2.4225 15 6 6.1091 1.9325 -0.3161 16 8 7.4494 2.1182 -0.4186 17 6 7.9107 3.4656 -0.5351 18 6 5.2590 3.0172 -0.3272 19 6 3.8767 2.8261 -0.2209 20 6 2.9969 3.9559 -0.2323 21 7 2.2990 4.8522 -0.2405 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5140 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7832 -0.5589 0.0005 28 1 6.4216 -3.5934 0.6915 29 1 7.6029 4.0323 0.3437 30 1 7.4828 3.9201 -1.4287 31 1 8.9982 3.4723 -0.6088 32 1 5.6601 4.0158 -0.4175 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:40 Heat of formation + Delta-G solvation = -50.708675 kcal Electronic energy + Delta-G solvation = -17636.142806 eV Core-core repulsion = 14754.712288 eV Total energy + Delta-G solvation = -2881.430518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18247 -39.77875 -37.66388 -37.04268 -35.51578 -33.04808 -32.26237 -29.93617 -28.13020 -27.67893 -24.68130 -23.53767 -22.17021 -20.21471 -19.78342 -18.46400 -17.43521 -17.22013 -17.02624 -16.42981 -16.25328 -15.61995 -14.90355 -14.89103 -14.68582 -14.37364 -13.88723 -13.74933 -13.71860 -13.49593 -13.20773 -12.93893 -12.86182 -12.66833 -12.40481 -12.19720 -11.91885 -11.79095 -11.57581 -11.23454 -10.83454 -9.74001 -9.08180 -8.68200 -6.56581 0.14467 0.81973 1.20935 1.37220 1.47500 1.91375 1.98062 2.10655 2.31009 2.70656 2.82284 3.35744 3.37103 4.02065 4.03649 4.17181 4.35680 4.44641 4.54632 4.56467 4.58799 4.76280 4.83628 4.90672 4.92398 5.03317 5.12375 5.20820 5.35133 5.63197 5.85451 6.05646 6.23751 6.50552 6.57628 6.80805 7.02026 7.96318 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.012491 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.083541 B = 2241.147160 C = 3924.078681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 O -0.332 6.332 4 C 0.200 3.800 5 C -0.329 4.329 6 C 0.108 3.892 7 C -0.422 4.422 8 H 0.075 0.925 9 C 0.054 3.946 10 N -0.806 5.806 11 Si 0.952 3.048 12 H -0.239 1.239 13 H -0.271 1.271 14 H -0.256 1.256 15 C 0.007 3.993 16 O -0.331 6.331 17 C 0.020 3.980 18 C -0.095 4.095 19 C -0.188 4.188 20 C 0.305 3.695 21 N -0.510 5.510 22 H 0.065 0.935 23 H 0.103 0.897 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.304 0.696 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 1.003 1.369 4.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 O -0.246 6.246 4 C 0.151 3.849 5 C -0.350 4.350 6 C 0.104 3.896 7 C -0.449 4.449 8 H 0.093 0.907 9 C -0.167 4.167 10 N -0.428 5.428 11 Si 0.774 3.226 12 H -0.164 1.164 13 H -0.197 1.197 14 H -0.180 1.180 15 C -0.038 4.038 16 O -0.246 6.246 17 C -0.075 4.075 18 C -0.116 4.116 19 C -0.194 4.194 20 C -0.004 4.004 21 N -0.189 5.189 22 H 0.084 0.916 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.611 2.072 1.367 5.237 hybrid contribution 0.286 -0.594 0.304 0.726 sum -4.325 1.478 1.671 4.866 Atomic orbital electron populations 1.21798 0.90562 1.04324 1.03339 1.23165 0.97446 0.81121 1.01915 1.85965 1.19790 1.30934 1.87872 1.18553 0.81756 0.92391 0.92157 1.20740 0.92525 0.97258 1.24442 1.17158 0.91576 0.90701 0.90197 1.19554 1.04476 0.94982 1.25859 0.90684 1.26961 0.97810 0.93324 0.98584 1.69625 1.37222 1.00764 1.35211 0.85740 0.78905 0.79865 0.78042 1.16407 1.19745 1.17953 1.18844 0.82619 0.92899 1.09466 1.85997 1.19344 1.29784 1.89426 1.23203 1.01424 0.81536 1.01337 1.20544 0.90268 0.98185 1.02573 1.14530 0.90321 0.84847 1.29740 1.25584 0.91941 0.92040 0.90885 1.81056 1.10149 1.12139 1.15583 0.91603 0.87812 0.91631 0.91586 0.92277 0.85372 0.88426 0.92454 0.92465 0.86922 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 10.28 71.98 0.74 -2.54 16 2 C 0.04 1.18 5.46 71.98 0.39 1.58 16 3 O -0.33 -12.83 9.55 -91.25 -0.87 -13.70 16 4 C 0.20 8.39 6.67 22.75 0.15 8.54 16 5 C -0.33 -14.34 6.23 22.75 0.14 -14.20 16 6 C 0.11 5.07 5.14 -21.21 -0.11 4.96 16 7 C -0.42 -21.28 9.18 23.36 0.21 -21.07 16 8 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 9 C 0.05 2.56 5.40 85.33 0.46 3.02 16 10 N -0.81 -38.63 13.92 21.87 0.30 -38.33 16 11 Si 0.95 37.28 24.36 68.60 1.67 38.95 16 12 H -0.24 -8.34 5.39 99.48 0.54 -7.80 16 13 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 14 H -0.26 -10.64 7.04 99.48 0.70 -9.94 16 15 C 0.01 0.29 6.71 23.00 0.15 0.44 16 16 O -0.33 -13.36 9.81 -90.23 -0.89 -14.25 16 17 C 0.02 0.55 9.81 113.37 1.11 1.66 16 18 C -0.09 -3.66 8.72 22.58 0.20 -3.46 16 19 C -0.19 -7.73 5.77 -21.00 -0.12 -7.85 16 20 C 0.31 12.60 14.84 88.33 1.31 13.91 16 21 N -0.51 -21.65 18.54 19.01 0.35 -21.30 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 2.00 7.61 -2.38 -0.02 1.99 16 26 H 0.06 1.82 6.40 -2.39 -0.02 1.81 16 27 H 0.13 5.33 2.79 -2.91 -0.01 5.32 16 28 H 0.30 12.86 8.29 -92.70 -0.77 12.09 16 29 H 0.06 1.43 7.66 -2.38 -0.02 1.42 16 30 H 0.06 1.43 7.65 -2.39 -0.02 1.41 16 31 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.14 4.66 6.26 -2.91 -0.02 4.64 16 Total: -1.00 -56.88 277.02 6.19 -50.68 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.98 Total: 12.96 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.65 Total: -15.02 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.66 Total: -59.63 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.76 Total: -27.95 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 1.67 Total: 38.95 kcal Total: -56.88 6.19 -50.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.024 kcal (2) G-P(sol) polarization free energy of solvation -56.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds