Wall clock time and date at job start Mon Mar 30 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47176 * 2 1 4 4 C 1.35745 * 117.00146 * 180.02562 * 3 2 1 5 5 C 1.37768 * 119.98865 * 359.97438 * 4 3 2 6 6 C 1.40814 * 119.98250 * 180.02562 * 5 4 3 7 7 C 1.41078 * 120.01764 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99734 * 149.83452 * 7 6 5 9 9 C 1.40131 * 120.00210 * 329.83665 * 7 6 5 10 10 N 1.30702 * 119.99925 * 165.52569 * 9 7 6 11 11 Si 1.86791 * 120.00217 * 345.52413 * 9 7 6 12 12 H 1.48504 * 109.47187 * 94.07201 * 11 9 7 13 13 H 1.48497 * 109.47465 * 214.07630 * 11 9 7 14 14 H 1.48506 * 109.47109 * 334.07680 * 11 9 7 15 15 C 1.40848 * 119.96123 * 0.02562 * 6 5 4 16 16 C 1.37730 * 119.98125 * 359.97438 * 15 6 5 17 17 O 1.35738 * 119.98878 * 180.02562 * 16 15 6 18 18 C 1.42904 * 117.00211 * 5.94271 * 17 16 15 19 19 C 1.40652 * 119.99128 * 180.27308 * 4 3 2 20 20 C 1.43195 * 119.98374 * 0.02562 * 19 4 3 21 21 N 4.92522 * 99.28034 * 0.20160 * 2 1 3 22 22 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47172 * 300.00117 * 1 2 3 24 24 H 1.09007 * 109.47010 * 60.00600 * 1 2 3 25 25 H 1.09007 * 109.47011 * 239.99569 * 2 1 3 26 26 H 1.08997 * 109.46975 * 120.00157 * 2 1 3 27 27 H 1.08006 * 120.01343 * 0.03040 * 5 4 3 28 28 H 0.97001 * 120.00126 * 179.97438 * 10 9 7 29 29 H 1.07992 * 120.00771 * 180.02562 * 15 6 5 30 30 H 1.08991 * 109.46819 * 295.31531 * 18 17 16 31 31 H 1.09003 * 109.46909 * 175.30793 * 18 17 16 32 32 H 1.09002 * 109.46575 * 55.31403 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3521 1.5251 -0.0005 5 6 4.1911 0.4324 -0.0005 6 6 5.5871 0.6171 -0.0005 7 6 6.4470 -0.5014 -0.0011 8 1 7.4172 -0.4364 -0.4711 9 6 6.0423 -1.6967 0.6082 10 7 6.6949 -2.8042 0.3721 11 14 4.5701 -1.7072 1.7579 12 1 3.3494 -2.0736 0.9957 13 1 4.7942 -2.6990 2.8401 14 1 4.3962 -0.3572 2.3518 15 6 6.1244 1.9190 0.0000 16 6 5.2842 3.0103 0.0000 17 8 5.8018 4.2651 -0.0001 18 6 7.2200 4.3820 -0.1319 19 6 3.8895 2.8249 0.0052 20 6 3.0167 3.9601 0.0122 21 7 2.3243 4.8607 0.0171 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.7783 -0.5657 -0.0006 28 1 6.4151 -3.6315 0.7941 29 1 7.1949 2.0615 -0.0005 30 1 7.7035 3.9374 0.7378 31 1 7.4929 5.4350 -0.2009 32 1 7.5450 3.8626 -1.0334 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:43 Heat of formation + Delta-G solvation = -38.046861 kcal Electronic energy + Delta-G solvation = -17621.753275 eV Core-core repulsion = 14740.871814 eV Total energy + Delta-G solvation = -2880.881461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71182 -38.50730 -36.10702 -35.43355 -33.67398 -31.68435 -30.48480 -28.50564 -27.14155 -26.05225 -23.33055 -21.79069 -20.74095 -18.64952 -18.15250 -16.65377 -15.89233 -15.77718 -15.67764 -15.15761 -15.11210 -14.15694 -13.49084 -13.26077 -13.12563 -12.86363 -12.41538 -12.34372 -12.10293 -11.89406 -11.61369 -11.49869 -11.31866 -11.15798 -11.14226 -10.68073 -10.59800 -10.09412 -10.04567 -9.86223 -9.25972 -7.67602 -7.34454 -7.31977 -4.95330 1.95737 2.47661 2.81731 2.99862 3.08988 3.40352 3.68621 3.76005 3.79196 4.13552 4.48237 5.08091 5.13795 5.19056 5.25437 5.49424 5.52372 5.58964 5.72811 5.80453 5.98890 6.03343 6.11207 6.19702 6.25871 6.35817 6.62312 6.80368 7.16888 7.28401 7.48255 7.83724 7.98528 7.99448 8.30215 8.40245 8.66014 9.65044 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.011411 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.233937 B = 2453.289829 C = 3999.370196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.318 6.318 4 C 0.238 3.762 5 C -0.348 4.348 6 C 0.154 3.846 7 C -0.414 4.414 8 H 0.100 0.900 9 C 0.082 3.918 10 N -0.782 5.782 11 Si 0.911 3.089 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.236 1.236 15 C -0.315 4.315 16 C 0.226 3.774 17 O -0.323 6.323 18 C 0.033 3.967 19 C -0.221 4.221 20 C 0.305 3.695 21 N -0.498 5.498 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.293 0.707 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 0.083 0.632 2.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.232 6.232 4 C 0.190 3.810 5 C -0.368 4.368 6 C 0.150 3.850 7 C -0.441 4.441 8 H 0.118 0.882 9 C -0.141 4.141 10 N -0.403 5.403 11 Si 0.737 3.263 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.158 1.158 15 C -0.335 4.335 16 C 0.178 3.822 17 O -0.236 6.236 18 C -0.063 4.063 19 C -0.228 4.228 20 C -0.006 4.006 21 N -0.178 5.178 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.233 1.508 0.665 3.629 hybrid contribution 0.187 -1.097 0.403 1.183 sum -3.046 0.411 1.068 3.254 Atomic orbital electron populations 1.21768 0.93260 1.02374 1.03298 1.22827 0.95229 0.82423 1.01841 1.85940 1.20137 1.28847 1.88238 1.18103 0.80949 0.91719 0.90250 1.20873 0.94316 0.96050 1.25522 1.17234 0.90674 0.92343 0.84771 1.19719 1.03350 0.92659 1.28361 0.88190 1.26365 0.97598 0.94134 0.96008 1.69593 1.37078 1.00160 1.33496 0.86345 0.79908 0.80539 0.79516 1.19115 1.21410 1.15846 1.20846 0.98152 0.91352 1.23172 1.18172 0.89907 0.82945 0.91154 1.85946 1.23516 1.26265 1.87825 1.22962 0.79312 1.02409 1.01572 1.13770 0.87288 0.85556 1.36183 1.25288 0.92033 0.92109 0.91149 1.81005 1.10288 1.11199 1.15286 0.90690 0.91735 0.91637 0.91725 0.92280 0.86626 0.89606 0.86319 0.92619 0.89236 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.54 16 2 C 0.05 0.86 5.46 37.16 0.20 1.06 16 3 O -0.32 -6.46 9.56 -18.94 -0.18 -6.64 16 4 C 0.24 5.20 6.68 -38.84 -0.26 4.94 16 5 C -0.35 -7.67 5.99 -38.78 -0.23 -7.90 16 6 C 0.15 3.51 5.14 -106.86 -0.55 2.96 16 7 C -0.41 -9.82 9.58 -37.80 -0.36 -10.18 16 8 H 0.10 2.44 8.06 -52.48 -0.42 2.02 16 9 C 0.08 1.90 5.45 -17.32 -0.09 1.80 16 10 N -0.78 -18.33 13.92 55.56 0.77 -17.55 16 11 Si 0.91 18.42 23.66 -169.99 -4.02 14.40 16 12 H -0.26 -4.98 5.96 56.52 0.34 -4.65 16 13 H -0.29 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.24 -4.98 6.70 56.52 0.38 -4.61 16 15 C -0.31 -6.62 8.75 -38.78 -0.34 -6.96 16 16 C 0.23 4.77 6.67 -38.84 -0.26 4.51 16 17 O -0.32 -6.19 9.92 -18.92 -0.19 -6.38 16 18 C 0.03 0.46 9.81 101.05 0.99 1.45 16 19 C -0.22 -4.93 5.79 -106.13 -0.61 -5.54 16 20 C 0.30 6.98 14.38 -22.47 -0.32 6.65 16 21 N -0.50 -11.68 18.54 41.84 0.78 -10.91 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 25 H 0.06 1.03 7.65 -51.93 -0.40 0.63 16 26 H 0.06 0.99 6.09 -51.93 -0.32 0.67 16 27 H 0.12 2.46 2.73 -52.48 -0.14 2.31 16 28 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 29 H 0.12 2.25 6.29 -52.49 -0.33 1.92 16 30 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 LS Contribution 276.34 15.07 4.16 4.16 Total: -1.00 -26.89 276.34 -3.45 -30.34 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.32 Total: 1.31 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.46 Total: -8.74 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 1.55 Total: -28.46 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.37 Total: -13.02 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.02 Total: 14.40 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.89 -3.45 -30.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.708 kcal (2) G-P(sol) polarization free energy of solvation -26.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds