Wall clock time and date at job start Mon Mar 30 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47494 * 2 1 4 4 C 1.35627 * 117.00252 * 180.02562 * 3 2 1 5 5 C 1.37949 * 120.11423 * 0.29032 * 4 3 2 6 6 C 1.38979 * 121.07001 * 180.28292 * 5 4 3 7 7 O 1.35704 * 119.37846 * 179.71708 * 6 5 4 8 8 C 1.42898 * 116.99888 * 179.73092 * 7 6 5 9 9 C 1.38927 * 121.24654 * 359.44087 * 6 5 4 10 10 C 1.39165 * 120.12621 * 0.25406 * 9 6 5 11 11 C 1.43203 * 120.51537 * 180.02562 * 10 9 6 12 12 N 7.22682 * 132.45543 * 359.97438 * 2 1 3 13 13 C 1.41569 * 120.11563 * 180.02562 * 4 3 2 14 14 C 1.40348 * 120.58477 * 359.97146 * 13 4 3 15 15 H 1.08003 * 119.99663 * 142.01162 * 14 13 4 16 16 C 1.40237 * 120.00412 * 322.00838 * 14 13 4 17 17 N 1.30709 * 119.99583 * 338.60175 * 16 14 13 18 18 Si 1.86800 * 119.99919 * 158.59397 * 16 14 13 19 19 H 1.48496 * 109.46758 * 60.00504 * 18 16 14 20 20 H 1.48502 * 109.46844 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47412 * 300.00555 * 18 16 14 22 22 H 1.09005 * 109.47631 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47119 * 299.99932 * 1 2 3 24 24 H 1.08996 * 109.47177 * 59.99893 * 1 2 3 25 25 H 1.09004 * 109.46515 * 239.99826 * 2 1 3 26 26 H 1.08996 * 109.47177 * 120.00107 * 2 1 3 27 27 H 1.08006 * 119.46282 * 0.02562 * 5 4 3 28 28 H 1.09008 * 109.46646 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.47338 * 299.99406 * 8 7 6 30 30 H 1.08994 * 109.47282 * 60.00416 * 8 7 6 31 31 H 1.07994 * 119.93547 * 180.27159 * 9 6 5 32 32 H 0.97010 * 119.99672 * 177.80628 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3510 1.5249 -0.0005 5 6 4.1934 0.4326 -0.0071 6 6 5.5741 0.5916 -0.0019 7 8 6.3708 -0.5070 -0.0028 8 6 7.7823 -0.2846 -0.0033 9 6 6.1541 1.8540 -0.0015 10 6 5.3520 2.9912 -0.0011 11 6 5.9410 4.2965 -0.0012 12 7 6.4082 5.3320 -0.0024 13 6 3.8947 2.8320 0.0000 14 6 3.0535 3.9554 0.0004 15 1 3.3199 4.8293 0.5765 16 6 1.8670 3.9434 -0.7471 17 7 1.7323 3.1108 -1.7457 18 14 0.4793 5.1169 -0.3155 19 1 0.9613 6.5168 -0.4302 20 1 -0.6555 4.9066 -1.2501 21 1 0.0291 4.8608 1.0762 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.7732 -0.5624 -0.0122 28 1 8.3011 -1.2434 -0.0035 29 1 8.0610 0.2798 -0.8931 30 1 8.0617 0.2789 0.8869 31 1 7.2295 1.9530 -0.0019 32 1 0.8997 3.0803 -2.2427 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575651051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:20 Heat of formation + Delta-G solvation = -28.283084 kcal Electronic energy + Delta-G solvation = -17703.208729 eV Core-core repulsion = 14822.750657 eV Total energy + Delta-G solvation = -2880.458072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.19588 -37.95635 -36.07194 -34.60989 -33.51693 -31.07257 -29.95410 -28.81906 -26.80710 -24.99795 -23.44457 -21.44010 -20.87350 -18.52892 -17.44876 -15.95484 -15.50606 -15.45465 -15.19998 -14.91581 -14.88151 -14.23154 -13.48019 -12.81568 -12.63469 -12.39274 -12.20614 -12.20008 -11.84889 -11.70977 -11.58548 -11.31679 -11.24098 -10.89728 -10.87627 -10.65657 -10.36144 -10.15177 -9.84626 -9.44447 -8.98668 -7.45142 -7.13793 -6.84203 -4.43574 2.03417 2.70649 3.03189 3.06943 3.12402 3.83960 3.88322 4.08611 4.15004 4.40198 4.57745 5.28675 5.36878 5.47712 5.58464 5.60564 5.64703 5.77406 5.80683 5.91948 6.04709 6.20917 6.28906 6.39114 6.51562 6.70365 6.91369 6.95676 7.31441 7.45029 7.63217 8.10844 8.23961 8.36520 8.59133 8.81669 8.85923 10.00066 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.010139 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.500441 B = 2761.012061 C = 4128.198300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.273 6.273 4 C 0.113 3.887 5 C -0.191 4.191 6 C 0.030 3.970 7 O -0.330 6.330 8 C 0.036 3.964 9 C -0.143 4.143 10 C -0.138 4.138 11 C 0.305 3.695 12 N -0.504 5.504 13 C 0.128 3.872 14 C -0.439 4.439 15 H 0.085 0.915 16 C 0.090 3.910 17 N -0.743 5.743 18 Si 0.906 3.094 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -7.755 1.642 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.186 6.186 4 C 0.067 3.933 5 C -0.212 4.212 6 C -0.014 4.014 7 O -0.245 6.245 8 C -0.060 4.060 9 C -0.164 4.164 10 C -0.145 4.145 11 C -0.005 4.005 12 N -0.184 5.184 13 C 0.122 3.878 14 C -0.466 4.466 15 H 0.103 0.897 16 C -0.134 4.134 17 N -0.364 5.364 18 Si 0.730 3.270 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.185 1.185 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.196 -6.269 1.408 6.536 hybrid contribution -0.540 -0.102 0.038 0.550 sum -1.736 -6.371 1.447 6.760 Atomic orbital electron populations 1.21688 0.94186 1.01431 1.03036 1.22518 0.94846 0.84809 1.00091 1.86203 1.18940 1.25209 1.88210 1.18640 0.81531 0.92464 1.00708 1.19928 0.91038 0.97660 1.12541 1.17774 0.89331 0.84364 1.09945 1.85851 1.16481 1.31167 1.91024 1.22772 0.80726 1.01823 1.00693 1.20456 0.97632 0.90934 1.07426 1.16192 0.91357 0.84684 1.22221 1.25498 0.91289 0.92367 0.91329 1.81013 1.11180 1.11308 1.14868 1.17642 0.88564 0.90297 0.91291 1.19280 1.03116 1.00521 1.23713 0.89686 1.25765 0.98849 0.95923 0.92885 1.69649 1.26209 1.29415 1.11151 0.86374 0.79812 0.80882 0.79955 1.19013 1.20124 1.18452 0.91613 0.92161 0.91848 0.93096 0.93498 0.87058 0.89779 0.93576 0.93629 0.87561 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 37.16 0.38 -1.68 16 2 C 0.05 0.92 5.45 37.16 0.20 1.12 16 3 O -0.27 -5.97 7.02 -18.58 -0.13 -6.10 16 4 C 0.11 2.62 6.18 -38.42 -0.24 2.39 16 5 C -0.19 -4.10 8.91 -39.41 -0.35 -4.45 16 6 C 0.03 0.63 6.68 -39.05 -0.26 0.37 16 7 O -0.33 -6.20 10.47 -18.82 -0.20 -6.40 16 8 C 0.04 0.51 9.79 101.05 0.99 1.50 16 9 C -0.14 -3.04 8.71 -38.98 -0.34 -3.38 16 10 C -0.14 -3.26 5.94 -104.26 -0.62 -3.88 16 11 C 0.30 7.32 14.48 -22.47 -0.33 7.00 16 12 N -0.50 -12.36 18.54 41.84 0.78 -11.58 16 13 C 0.13 3.18 5.54 -104.47 -0.58 2.60 16 14 C -0.44 -11.11 8.21 -38.04 -0.31 -11.42 16 15 H 0.09 2.17 7.73 -52.48 -0.41 1.76 16 16 C 0.09 2.14 4.38 -17.28 -0.08 2.07 16 17 N -0.74 -17.81 11.27 55.56 0.63 -17.18 16 18 Si 0.91 18.22 29.61 -169.99 -5.03 13.19 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.85 7.64 -51.93 -0.40 0.46 16 26 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 27 H 0.11 2.15 6.22 -52.48 -0.33 1.83 16 28 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.05 0.63 7.62 -51.93 -0.40 0.24 16 30 H 0.05 0.61 7.62 -51.93 -0.40 0.22 16 31 H 0.11 2.00 6.20 -52.49 -0.33 1.67 16 32 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -27.43 284.34 -4.67 -32.10 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.47 Total: -0.53 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.53 Total: -7.78 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 1.40 Total: -28.76 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.33 Total: -12.50 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.43 -4.67 -32.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575651051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.819 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds