Wall clock time and date at job start Mon Mar 30 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47494 * 2 1 4 4 C 1.35627 * 117.00252 * 180.02562 * 3 2 1 5 5 C 1.37949 * 120.11423 * 0.29032 * 4 3 2 6 6 C 1.38979 * 121.07001 * 180.28292 * 5 4 3 7 7 O 1.35704 * 119.37846 * 179.71708 * 6 5 4 8 8 C 1.42898 * 116.99888 * 179.73092 * 7 6 5 9 9 C 1.38927 * 121.24654 * 359.44087 * 6 5 4 10 10 C 1.39165 * 120.12621 * 0.25406 * 9 6 5 11 11 C 1.43203 * 120.51537 * 180.02562 * 10 9 6 12 12 N 7.22682 * 132.45543 * 359.97438 * 2 1 3 13 13 C 1.41569 * 120.11563 * 180.02562 * 4 3 2 14 14 C 1.40348 * 120.58477 * 359.97146 * 13 4 3 15 15 H 1.08003 * 119.99663 * 142.01162 * 14 13 4 16 16 C 1.40237 * 120.00412 * 322.00838 * 14 13 4 17 17 N 1.30709 * 119.99583 * 338.60175 * 16 14 13 18 18 Si 1.86800 * 119.99919 * 158.59397 * 16 14 13 19 19 H 1.48496 * 109.46758 * 60.00504 * 18 16 14 20 20 H 1.48502 * 109.46844 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47412 * 300.00555 * 18 16 14 22 22 H 1.09005 * 109.47631 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47119 * 299.99932 * 1 2 3 24 24 H 1.08996 * 109.47177 * 59.99893 * 1 2 3 25 25 H 1.09004 * 109.46515 * 239.99826 * 2 1 3 26 26 H 1.08996 * 109.47177 * 120.00107 * 2 1 3 27 27 H 1.08006 * 119.46282 * 0.02562 * 5 4 3 28 28 H 1.09008 * 109.46646 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.47338 * 299.99406 * 8 7 6 30 30 H 1.08994 * 109.47282 * 60.00416 * 8 7 6 31 31 H 1.07994 * 119.93547 * 180.27159 * 9 6 5 32 32 H 0.97010 * 119.99672 * 177.80628 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3510 1.5249 -0.0005 5 6 4.1934 0.4326 -0.0071 6 6 5.5741 0.5916 -0.0019 7 8 6.3708 -0.5070 -0.0028 8 6 7.7823 -0.2846 -0.0033 9 6 6.1541 1.8540 -0.0015 10 6 5.3520 2.9912 -0.0011 11 6 5.9410 4.2965 -0.0012 12 7 6.4082 5.3320 -0.0024 13 6 3.8947 2.8320 0.0000 14 6 3.0535 3.9554 0.0004 15 1 3.3199 4.8293 0.5765 16 6 1.8670 3.9434 -0.7471 17 7 1.7323 3.1108 -1.7457 18 14 0.4793 5.1169 -0.3155 19 1 0.9613 6.5168 -0.4302 20 1 -0.6555 4.9066 -1.2501 21 1 0.0291 4.8608 1.0762 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.7732 -0.5624 -0.0122 28 1 8.3011 -1.2434 -0.0035 29 1 8.0610 0.2798 -0.8931 30 1 8.0617 0.2789 0.8869 31 1 7.2295 1.9530 -0.0019 32 1 0.8997 3.0803 -2.2427 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575651051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:19 Heat of formation + Delta-G solvation = -43.416165 kcal Electronic energy + Delta-G solvation = -17703.864948 eV Core-core repulsion = 14822.750657 eV Total energy + Delta-G solvation = -2881.114291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81119 -39.47364 -37.83030 -36.39083 -35.24401 -32.41481 -31.64808 -30.48015 -28.12134 -26.70961 -24.94155 -23.01146 -22.49325 -20.15347 -19.18074 -17.57426 -17.14784 -17.02888 -16.69224 -16.56175 -16.22243 -15.84251 -14.96600 -14.54249 -14.34394 -14.01867 -13.78611 -13.63975 -13.40672 -13.22961 -13.09556 -12.93435 -12.64972 -12.50360 -12.47396 -12.11570 -11.86956 -11.63069 -11.45580 -11.09579 -10.66708 -9.15942 -8.87827 -8.57143 -6.25824 0.24513 1.00786 1.40585 1.47508 1.51760 1.97338 2.23006 2.33112 2.62870 2.77724 2.94155 3.50673 3.59416 4.23244 4.24971 4.38175 4.46791 4.50727 4.55069 4.58304 4.75365 4.82887 4.93155 5.04853 5.08467 5.16778 5.23283 5.34008 5.59130 5.71204 5.91875 6.29570 6.47115 6.79060 6.81085 6.93944 7.20184 8.28021 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.010139 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.500441 B = 2761.012061 C = 4128.198300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 O -0.292 6.292 4 C 0.105 3.895 5 C -0.196 4.196 6 C 0.042 3.958 7 O -0.337 6.337 8 C 0.024 3.976 9 C -0.148 4.148 10 C -0.153 4.153 11 C 0.309 3.691 12 N -0.521 5.521 13 C 0.100 3.900 14 C -0.474 4.474 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.765 5.765 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.259 1.259 21 H -0.259 1.259 22 H 0.100 0.900 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.130 0.870 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -9.407 1.743 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 O -0.205 6.205 4 C 0.059 3.941 5 C -0.216 4.216 6 C -0.002 4.002 7 O -0.253 6.253 8 C -0.070 4.070 9 C -0.169 4.169 10 C -0.159 4.159 11 C 0.000 4.000 12 N -0.201 5.201 13 C 0.094 3.906 14 C -0.502 4.502 15 H 0.086 0.914 16 C -0.161 4.161 17 N -0.388 5.388 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.183 1.183 21 H -0.184 1.184 22 H 0.119 0.881 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.369 -7.944 1.507 8.200 hybrid contribution -0.347 0.241 0.017 0.423 sum -1.716 -7.703 1.524 8.037 Atomic orbital electron populations 1.21706 0.91952 1.03558 1.02458 1.22865 0.96671 0.82948 1.00749 1.86173 1.18229 1.28088 1.88034 1.18710 0.82542 0.92285 1.00612 1.20181 0.91363 0.98175 1.11866 1.17920 0.89707 0.84939 1.07678 1.85854 1.18678 1.30164 1.90579 1.23148 0.78259 1.04347 1.01287 1.20646 0.98698 0.90323 1.07267 1.16444 0.91532 0.85134 1.22828 1.25692 0.90898 0.92487 0.90933 1.80987 1.11869 1.11543 1.15654 1.17966 0.89166 0.91292 0.92137 1.19325 1.05010 1.00521 1.25353 0.91416 1.26314 1.00134 0.97233 0.92390 1.69650 1.27001 1.30573 1.11554 0.85550 0.77707 0.78485 0.79953 1.19776 1.18318 1.18358 0.88100 0.92289 0.92836 0.92926 0.92129 0.85027 0.86209 0.93103 0.92820 0.85217 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 10.28 71.98 0.74 -2.93 16 2 C 0.04 1.41 5.45 71.98 0.39 1.80 16 3 O -0.29 -12.71 7.02 -89.40 -0.63 -13.34 16 4 C 0.11 4.89 6.18 23.02 0.14 5.03 16 5 C -0.20 -8.15 8.91 22.38 0.20 -7.95 16 6 C 0.04 1.70 6.68 22.61 0.15 1.85 16 7 O -0.34 -11.75 10.47 -90.24 -0.94 -12.69 16 8 C 0.02 0.61 9.79 113.37 1.11 1.72 16 9 C -0.15 -6.13 8.71 22.66 0.20 -5.94 16 10 C -0.15 -7.29 5.94 -19.63 -0.12 -7.41 16 11 C 0.31 15.06 14.48 88.33 1.28 16.33 16 12 N -0.52 -25.80 18.54 19.00 0.35 -25.45 16 13 C 0.10 5.07 5.54 -19.76 -0.11 4.96 16 14 C -0.47 -24.74 8.21 23.27 0.19 -24.55 16 15 H 0.07 3.62 7.73 -2.91 -0.02 3.60 16 16 C 0.06 2.96 4.38 85.35 0.37 3.34 16 17 N -0.77 -36.98 11.27 21.88 0.25 -36.73 16 18 Si 0.96 37.60 29.61 68.60 2.03 39.63 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.68 7.64 -2.38 -0.02 1.66 16 26 H 0.06 1.79 7.66 -2.39 -0.02 1.77 16 27 H 0.13 4.83 6.22 -2.91 -0.02 4.81 16 28 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.05 1.24 7.62 -2.39 -0.02 1.23 16 30 H 0.05 1.28 7.62 -2.39 -0.02 1.26 16 31 H 0.13 4.64 6.20 -2.91 -0.02 4.62 16 32 H 0.29 12.84 8.30 -92.70 -0.77 12.07 16 Total: -1.00 -59.02 284.34 6.75 -52.27 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.14 Total: 10.04 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.55 Total: -13.73 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.60 Total: -62.18 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.57 Total: -26.03 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -59.02 6.75 -52.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575651051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.855 kcal (2) G-P(sol) polarization free energy of solvation -59.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds