Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47209 * 270.00058 * 3 2 1 5 5 H 1.48503 * 109.46880 * 30.00028 * 3 2 1 6 6 H 1.48495 * 109.47200 * 149.99719 * 3 2 1 7 7 C 1.37878 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99648 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47459 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47762 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99217 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99546 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.38238 * 119.99792 * 90.00154 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.98090 * 16 15 14 22 22 H 0.96998 * 119.99491 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47130 * 60.00402 * 9 7 2 24 24 H 1.09004 * 109.47166 * 300.00266 * 9 7 2 25 25 H 1.08997 * 109.47769 * 60.00024 * 10 9 7 26 26 H 1.09004 * 109.47003 * 300.00090 * 10 9 7 27 27 H 1.09000 * 109.47395 * 59.99138 * 11 10 9 28 28 H 1.09004 * 109.46800 * 299.99864 * 11 10 9 29 29 H 0.96998 * 120.00430 * 0.02562 * 14 12 11 30 30 H 1.09005 * 109.47643 * 60.00506 * 15 14 12 31 31 H 1.09000 * 109.47513 * 299.99670 * 15 14 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6368 0.0022 12 6 6.0538 -4.0576 0.0015 13 8 5.2655 -4.9793 0.0005 14 7 7.3788 -4.3039 0.0018 15 6 7.8670 -5.6851 0.0016 16 6 9.3741 -5.6852 0.0027 17 6 10.0643 -5.6857 1.2004 18 6 11.4467 -5.6863 1.2014 19 6 12.1388 -5.6870 0.0048 20 6 11.4485 -5.6811 -1.1928 21 6 10.0661 -5.6852 -1.1939 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8912 24 1 3.8752 -0.6805 -0.8888 25 1 3.6585 -3.1503 -0.8892 26 1 3.6577 -3.1506 0.8907 27 1 5.9141 -2.1232 0.8926 28 1 5.9154 -2.1226 -0.8873 29 1 8.0092 -3.5666 0.0029 30 1 7.5040 -6.1988 -0.8886 31 1 7.5034 -6.1991 0.8914 32 1 9.5236 -5.6856 2.1354 33 1 11.9860 -5.6863 2.1371 34 1 13.2188 -5.6879 0.0057 35 1 11.9892 -5.6772 -2.1277 36 1 9.5269 -5.6855 -2.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593935439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -33.688122 kcal Electronic energy + Delta-G solvation = -16484.559896 eV Core-core repulsion = 13739.700538 eV Total energy + Delta-G solvation = -2744.859357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96790 -39.07079 -35.07919 -34.22647 -32.14888 -31.52064 -31.25666 -28.57185 -26.21603 -23.49887 -22.92866 -21.58340 -20.51019 -19.80882 -17.47599 -16.74099 -16.44925 -15.86395 -15.84353 -15.17887 -15.17555 -14.18589 -13.86378 -13.66157 -13.44507 -13.26585 -12.84000 -12.60510 -12.58613 -11.96909 -11.57295 -11.40486 -11.36541 -10.95422 -10.76339 -10.00431 -9.84367 -9.68161 -9.55474 -9.29014 -9.15506 -9.06151 -9.02830 -8.49085 -5.98805 -3.96430 0.89559 1.03937 2.88390 3.17354 3.33095 3.40127 3.43237 3.64900 4.35783 4.48924 4.51291 4.65268 4.77213 5.05067 5.08551 5.13373 5.34531 5.38210 5.49260 5.60748 5.62634 5.68017 5.70056 6.07627 6.13741 6.14781 6.25723 6.40602 6.59163 6.62050 6.72101 6.95133 7.40303 7.48419 7.56646 7.84951 8.41013 8.61537 9.08152 9.63324 11.14959 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045313 B = 0.003286 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.773609 B = 8517.940985 C = 8815.320013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.141 4.141 12 C 0.512 3.488 13 O -0.535 6.535 14 N -0.736 5.736 15 C 0.159 3.841 16 C -0.105 4.105 17 C -0.102 4.102 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.101 4.101 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.011 0.989 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.400 0.600 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.639 -9.845 0.035 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.181 4.181 12 C 0.300 3.700 13 O -0.411 6.411 14 N -0.390 5.390 15 C 0.036 3.964 16 C -0.105 4.105 17 C -0.120 4.120 18 C -0.141 4.141 19 C -0.134 4.134 20 C -0.141 4.141 21 C -0.120 4.120 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.234 0.766 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 25.873 -10.413 0.037 27.890 hybrid contribution 0.795 1.254 -0.022 1.485 sum 26.667 -9.158 0.015 28.196 Atomic orbital electron populations 1.69927 1.06310 1.26770 1.51410 1.25057 0.94747 0.99159 0.94722 0.86754 0.80317 0.83630 0.78404 1.20358 1.21464 1.19042 1.21174 0.89558 0.94548 1.50367 0.90929 1.19608 0.97297 0.92201 0.96093 1.21266 0.89223 0.99514 1.02549 1.21870 1.00675 0.91832 1.03712 1.21203 0.81301 0.92677 0.74828 1.90698 1.55149 1.46750 1.48481 1.46187 1.07557 1.07844 1.77413 1.20145 0.88654 0.84507 1.03104 1.19963 0.95124 1.01844 0.93583 1.21157 0.94337 0.98797 0.97714 1.21184 0.94246 1.00378 0.98260 1.21224 1.00007 0.99546 0.92638 1.21185 0.94256 1.00377 0.98250 1.21156 0.94325 0.98796 0.97726 0.92810 0.96663 0.97104 0.92092 0.92076 0.89363 0.89377 0.76617 0.90772 0.90786 0.85741 0.85884 0.86030 0.85883 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.58 13.96 55.43 0.77 -27.81 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.47 16 10 C -0.09 -1.84 4.44 -26.74 -0.12 -1.95 16 11 C -0.14 -2.20 5.70 -27.88 -0.16 -2.36 16 12 C 0.51 7.99 7.83 -10.99 -0.09 7.91 16 13 O -0.54 -10.62 15.98 5.56 0.09 -10.53 16 14 N -0.74 -8.47 5.55 -61.47 -0.34 -8.81 16 15 C 0.16 1.69 5.80 -5.19 -0.03 1.66 16 16 C -0.10 -0.93 5.25 -104.62 -0.55 -1.48 16 17 C -0.10 -0.83 9.70 -39.58 -0.38 -1.22 16 18 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 19 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 20 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 21 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 22 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 26 H 0.06 1.36 8.10 -51.93 -0.42 0.93 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.40 3.66 8.46 -40.82 -0.35 3.31 16 30 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -34.31 309.92 -8.26 -42.57 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.34 Total: -0.63 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -3.45 Total: -16.71 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.43 Total: -36.62 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.31 -8.26 -42.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593935439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.882 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds