Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47209 * 270.00058 * 3 2 1 5 5 H 1.48503 * 109.46880 * 30.00028 * 3 2 1 6 6 H 1.48495 * 109.47200 * 149.99719 * 3 2 1 7 7 C 1.37878 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99648 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47459 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47762 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99217 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99546 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.38238 * 119.99792 * 90.00154 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.98090 * 16 15 14 22 22 H 0.96998 * 119.99491 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47130 * 60.00402 * 9 7 2 24 24 H 1.09004 * 109.47166 * 300.00266 * 9 7 2 25 25 H 1.08997 * 109.47769 * 60.00024 * 10 9 7 26 26 H 1.09004 * 109.47003 * 300.00090 * 10 9 7 27 27 H 1.09000 * 109.47395 * 59.99138 * 11 10 9 28 28 H 1.09004 * 109.46800 * 299.99864 * 11 10 9 29 29 H 0.96998 * 120.00430 * 0.02562 * 14 12 11 30 30 H 1.09005 * 109.47643 * 60.00506 * 15 14 12 31 31 H 1.09000 * 109.47513 * 299.99670 * 15 14 12 32 32 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 36 36 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6368 0.0022 12 6 6.0538 -4.0576 0.0015 13 8 5.2655 -4.9793 0.0005 14 7 7.3788 -4.3039 0.0018 15 6 7.8670 -5.6851 0.0016 16 6 9.3741 -5.6852 0.0027 17 6 10.0643 -5.6857 1.2004 18 6 11.4467 -5.6863 1.2014 19 6 12.1388 -5.6870 0.0048 20 6 11.4485 -5.6811 -1.1928 21 6 10.0661 -5.6852 -1.1939 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8912 24 1 3.8752 -0.6805 -0.8888 25 1 3.6585 -3.1503 -0.8892 26 1 3.6577 -3.1506 0.8907 27 1 5.9141 -2.1232 0.8926 28 1 5.9154 -2.1226 -0.8873 29 1 8.0092 -3.5666 0.0029 30 1 7.5040 -6.1988 -0.8886 31 1 7.5034 -6.1991 0.8914 32 1 9.5236 -5.6856 2.1354 33 1 11.9860 -5.6863 2.1371 34 1 13.2188 -5.6879 0.0057 35 1 11.9892 -5.6772 -2.1277 36 1 9.5269 -5.6855 -2.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593935439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -56.282833 kcal Electronic energy + Delta-G solvation = -16485.539676 eV Core-core repulsion = 13739.700538 eV Total energy + Delta-G solvation = -2745.839137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93857 -39.93849 -36.31009 -35.84863 -34.13610 -32.43338 -31.80271 -30.22551 -27.30182 -25.18090 -23.48110 -22.35379 -22.03876 -21.24643 -18.97635 -18.17686 -17.52885 -16.92629 -16.81990 -16.26638 -16.13110 -15.78709 -15.12671 -14.83075 -14.59456 -14.30352 -13.97135 -13.76157 -13.71511 -13.46160 -13.13258 -12.69454 -12.47439 -12.01607 -11.92403 -11.78303 -11.72324 -11.48737 -11.32105 -10.91611 -10.74343 -10.13703 -9.83726 -9.75682 -8.27133 -6.32765 0.29813 0.48426 1.39134 1.42749 1.54910 1.66046 2.26610 2.39862 2.94554 3.07987 3.65588 3.92006 3.92467 4.14730 4.17908 4.26106 4.29875 4.36584 4.58340 4.66121 4.76786 4.82583 4.93082 4.97858 5.05087 5.05601 5.15262 5.38619 5.54057 5.57942 5.61302 5.61370 5.64707 5.68992 6.07651 6.31597 6.55665 6.76113 7.27125 7.31710 8.90641 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045313 B = 0.003286 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.773609 B = 8517.940985 C = 8815.320013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.541 4.541 8 H 0.019 0.981 9 C -0.009 4.009 10 C -0.081 4.081 11 C -0.131 4.131 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.714 5.714 15 C 0.162 3.838 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.111 4.111 22 H 0.266 0.734 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.415 0.585 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.640 -8.154 0.035 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.037 0.963 9 C -0.047 4.047 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.468 6.468 14 N -0.367 5.367 15 C 0.038 3.962 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.145 4.145 19 C -0.135 4.135 20 C -0.145 4.145 21 C -0.129 4.129 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.252 0.748 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 29.941 -8.729 0.037 31.188 hybrid contribution -0.467 0.608 -0.023 0.767 sum 29.475 -8.120 0.014 30.573 Atomic orbital electron populations 1.70110 1.08707 1.28286 1.52738 1.26211 0.95754 1.04161 0.93861 0.85482 0.79657 0.77005 0.79393 1.18890 1.21223 1.15848 1.21574 0.92757 0.92848 1.50674 0.96255 1.19548 0.93435 0.94341 0.97335 1.21048 0.93491 0.97125 1.00307 1.21722 0.96276 0.92482 1.06519 1.21193 0.82190 0.92136 0.74388 1.90690 1.56737 1.48083 1.51289 1.45979 1.06398 1.09018 1.75300 1.20124 0.90155 0.83592 1.02291 1.19791 0.93713 1.03571 0.94379 1.21288 0.95058 0.99020 0.97587 1.21459 0.93898 0.99764 0.99406 1.21567 1.01298 0.98325 0.92303 1.21459 0.93909 0.99761 0.99395 1.21287 0.95045 0.99015 0.97600 0.92503 0.95096 0.95232 0.94501 0.94518 0.86495 0.86446 0.74780 0.91628 0.91645 0.85403 0.84023 0.83782 0.84020 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 2 C 0.00 -0.25 5.47 84.65 0.46 0.22 16 3 Si 0.96 44.16 27.47 68.60 1.88 46.05 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 7 C -0.54 -32.80 9.66 25.60 0.25 -32.55 16 8 H 0.02 1.32 7.99 -2.91 -0.02 1.29 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.08 -3.44 4.44 30.59 0.14 -3.30 16 11 C -0.13 -3.77 5.70 29.85 0.17 -3.60 16 12 C 0.51 15.54 7.83 87.66 0.69 16.22 16 13 O -0.59 -23.91 15.98 -3.03 -0.05 -23.96 16 14 N -0.71 -15.26 5.55 -466.78 -2.59 -17.85 16 15 C 0.16 3.34 5.80 85.64 0.50 3.83 16 16 C -0.11 -1.87 5.25 -19.86 -0.10 -1.97 16 17 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 18 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 19 C -0.12 -1.27 10.05 22.27 0.22 -1.04 16 20 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 21 C -0.11 -1.62 9.70 22.27 0.22 -1.41 16 22 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 23 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 24 H 0.03 1.29 7.57 -2.38 -0.02 1.27 16 25 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 26 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 27 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.12 2.75 8.14 -2.38 -0.02 2.74 16 29 H 0.42 6.41 8.46 -92.71 -0.78 5.62 16 30 H 0.07 1.48 8.09 -2.38 -0.02 1.46 16 31 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 32 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -77.90 309.92 3.08 -74.82 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.22 Total: 10.84 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.32 Total: -27.91 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.29 Total: -79.84 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.05 kcal Total: -77.90 3.08 -74.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593935439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.537 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds