Wall clock time and date at job start Mon Mar 30 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.50704 * 109.47001 * 240.00387 * 2 1 3 5 5 H 1.07997 * 119.99986 * 240.00014 * 4 2 1 6 6 C 1.37884 * 119.99988 * 59.99790 * 4 2 1 7 7 N 1.31513 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99746 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47472 * 60.00245 * 8 6 4 10 10 H 1.48503 * 109.46746 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47284 * 299.99882 * 8 6 4 12 12 C 1.50696 * 109.47213 * 120.00201 * 2 1 3 13 13 N 1.30967 * 126.42954 * 239.99747 * 12 2 1 14 14 C 1.35262 * 105.58102 * 179.97438 * 13 12 2 15 15 C 1.48265 * 126.42128 * 179.97438 * 14 13 12 16 16 C 1.41893 * 126.48122 * 359.97438 * 15 14 13 17 17 C 1.34562 * 107.29802 * 180.02562 * 16 15 14 18 18 N 1.36467 * 108.53492 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.48375 * 180.26180 * 18 17 16 20 20 C 1.35935 * 109.03688 * 359.97438 * 18 17 16 21 21 N 1.30852 * 107.14839 * 0.22795 * 14 13 12 22 22 O 1.21291 * 110.08346 * 359.60621 * 21 14 13 23 23 H 1.09005 * 109.47203 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47562 * 300.00019 * 1 2 3 25 25 H 1.09004 * 109.47521 * 59.99949 * 1 2 3 26 26 H 0.97001 * 119.99854 * 180.02562 * 7 6 4 27 27 H 1.08000 * 126.34797 * 359.97438 * 16 15 14 28 28 H 1.07999 * 125.73469 * 180.02562 * 17 16 15 29 29 H 1.08997 * 109.47284 * 269.69658 * 19 18 17 30 30 H 1.09012 * 109.46562 * 29.69171 * 19 18 17 31 31 H 1.08998 * 109.47511 * 149.69015 * 19 18 17 32 32 H 1.08002 * 125.95436 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8257 -2.5200 -4.0080 10 1 1.8267 -0.4196 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 6 2.0323 -0.7104 1.2304 13 7 2.7883 -0.1990 2.1696 14 6 2.9823 -1.1959 3.0630 15 6 3.7762 -1.1159 4.3126 16 6 4.4759 0.0198 4.7964 17 6 5.0608 -0.3344 5.9553 18 7 4.7568 -1.6394 6.2136 19 6 5.1990 -2.3997 7.3852 20 6 3.9725 -2.1186 5.2121 21 7 2.3424 -2.2455 2.6148 22 8 1.7894 -1.9807 1.5682 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1616 -3.4844 27 1 4.5297 0.9885 4.3219 28 1 5.6687 0.3065 6.5767 29 1 6.1471 -2.8896 7.1638 30 1 5.3282 -1.7229 8.2299 31 1 4.4505 -3.1522 7.6337 32 1 3.5749 -3.1203 5.1420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596598336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:28 Heat of formation + Delta-G solvation = 111.208479 kcal Electronic energy + Delta-G solvation = -17016.009955 eV Core-core repulsion = 14173.893443 eV Total energy + Delta-G solvation = -2842.116512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.47046 -41.10471 -35.17901 -34.69003 -32.87295 -31.71883 -29.80778 -28.58051 -26.78084 -25.31587 -23.36788 -23.20897 -21.02143 -20.15471 -19.10060 -17.51073 -17.07478 -16.24733 -15.81972 -15.37185 -14.89733 -14.30769 -13.74952 -13.43303 -12.96613 -12.86290 -12.66432 -12.47259 -12.12417 -11.74945 -11.47885 -11.15672 -10.97472 -10.93768 -10.62313 -10.32588 -10.19817 -9.97812 -9.55069 -8.96498 -8.51351 -8.40994 -7.94259 -6.15972 -4.24747 1.77620 2.32634 2.74716 2.80096 3.30179 3.33651 3.37886 3.77299 3.99718 4.32559 4.43427 4.60903 4.87793 4.88710 4.95702 5.12119 5.17397 5.25989 5.70993 5.88054 6.22005 6.42142 6.64848 6.68202 6.76449 6.88989 6.96291 7.01470 7.11495 7.27106 7.46437 7.69221 7.87267 8.07722 8.74300 9.14502 9.40890 10.90303 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045251 B = 0.004578 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.620900 B = 6114.369794 C = 6200.313238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.125 3.875 3 H 0.075 0.925 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.242 3.758 13 N -0.508 5.508 14 C 0.235 3.765 15 C -0.091 4.091 16 C -0.153 4.153 17 C -0.025 4.025 18 N -0.451 5.451 19 C 0.075 3.925 20 C 0.027 3.973 21 N -0.416 5.416 22 O 0.066 5.934 23 H 0.039 0.961 24 H 0.017 0.983 25 H 0.100 0.900 26 H 0.267 0.733 27 H 0.146 0.854 28 H 0.166 0.834 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -3.717 15.978 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.093 0.907 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.241 5.241 14 C -0.035 4.035 15 C -0.100 4.100 16 C -0.178 4.178 17 C -0.153 4.153 18 N -0.127 5.127 19 C -0.066 4.066 20 C -0.108 4.108 21 N -0.129 5.129 22 O 0.012 5.988 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.098 -4.220 16.729 18.299 hybrid contribution 0.317 -0.422 -0.942 1.080 sum 6.415 -4.642 15.787 17.661 Atomic orbital electron populations 1.21851 0.95649 1.00617 1.01561 1.17799 0.93782 0.95282 0.82630 0.90739 1.20859 1.32818 1.13154 0.89253 0.92007 1.24872 0.94571 0.94849 0.99007 1.69847 1.35776 1.22392 1.24264 0.86453 0.79312 0.79767 0.81387 1.19908 1.21016 1.20061 1.30062 0.89764 0.81030 0.96808 1.72069 1.19266 1.29192 1.03610 1.23105 0.98364 0.85906 0.96121 1.16673 1.04869 0.95634 0.92816 1.20931 1.01452 0.99184 0.96270 1.21736 1.07666 0.85304 1.00598 1.43810 1.39683 1.10658 1.18598 1.22021 1.01195 0.96951 0.86460 1.21740 0.99729 0.99490 0.89825 1.74777 1.15000 1.23565 0.99577 1.85211 1.54352 1.30621 1.28607 0.94207 0.96416 0.88132 0.92341 0.83594 0.81659 0.90889 0.89763 0.89837 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.95 37.16 0.33 -2.91 16 2 C 0.13 3.17 2.77 -92.92 -0.26 2.91 16 3 H 0.07 1.98 8.14 -51.93 -0.42 1.56 16 4 C -0.52 -14.11 8.55 -34.44 -0.29 -14.40 16 5 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.24 5.86 6.94 -12.99 -0.09 5.77 16 13 N -0.51 -12.03 11.58 -9.86 -0.11 -12.15 16 14 C 0.24 5.14 8.03 -156.07 -1.25 3.88 16 15 C -0.09 -1.64 6.12 -105.14 -0.64 -2.28 16 16 C -0.15 -2.39 10.84 -39.48 -0.43 -2.81 16 17 C -0.03 -0.30 11.40 -16.79 -0.19 -0.49 16 18 N -0.45 -5.12 3.14 -124.33 -0.39 -5.51 16 19 C 0.08 0.47 11.10 59.84 0.66 1.13 16 20 C 0.03 0.38 11.37 -16.49 -0.19 0.20 16 21 N -0.42 -9.29 12.19 30.99 0.38 -8.92 16 22 O 0.07 1.56 11.29 18.03 0.20 1.77 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.15 2.26 8.06 -52.49 -0.42 1.83 16 28 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -30.66 286.89 -6.10 -36.76 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.66 Total: -1.41 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.44 Total: -7.24 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.50 Total: -49.93 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: 0.20 Total: 1.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.66 -6.10 -36.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.965 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds