Wall clock time and date at job start Mon Mar 30 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.50704 * 109.47001 * 240.00387 * 2 1 3 5 5 H 1.07997 * 119.99986 * 240.00014 * 4 2 1 6 6 C 1.37884 * 119.99988 * 59.99790 * 4 2 1 7 7 N 1.31513 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99746 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47472 * 60.00245 * 8 6 4 10 10 H 1.48503 * 109.46746 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47284 * 299.99882 * 8 6 4 12 12 C 1.50696 * 109.47213 * 120.00201 * 2 1 3 13 13 N 1.30967 * 126.42954 * 239.99747 * 12 2 1 14 14 C 1.35262 * 105.58102 * 179.97438 * 13 12 2 15 15 C 1.48265 * 126.42128 * 179.97438 * 14 13 12 16 16 C 1.41893 * 126.48122 * 359.97438 * 15 14 13 17 17 C 1.34562 * 107.29802 * 180.02562 * 16 15 14 18 18 N 1.36467 * 108.53492 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.48375 * 180.26180 * 18 17 16 20 20 C 1.35935 * 109.03688 * 359.97438 * 18 17 16 21 21 N 1.30852 * 107.14839 * 0.22795 * 14 13 12 22 22 O 1.21291 * 110.08346 * 359.60621 * 21 14 13 23 23 H 1.09005 * 109.47203 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47562 * 300.00019 * 1 2 3 25 25 H 1.09004 * 109.47521 * 59.99949 * 1 2 3 26 26 H 0.97001 * 119.99854 * 180.02562 * 7 6 4 27 27 H 1.08000 * 126.34797 * 359.97438 * 16 15 14 28 28 H 1.07999 * 125.73469 * 180.02562 * 17 16 15 29 29 H 1.08997 * 109.47284 * 269.69658 * 19 18 17 30 30 H 1.09012 * 109.46562 * 29.69171 * 19 18 17 31 31 H 1.08998 * 109.47511 * 149.69015 * 19 18 17 32 32 H 1.08002 * 125.95436 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8257 -2.5200 -4.0080 10 1 1.8267 -0.4196 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 6 2.0323 -0.7104 1.2304 13 7 2.7883 -0.1990 2.1696 14 6 2.9823 -1.1959 3.0630 15 6 3.7762 -1.1159 4.3126 16 6 4.4759 0.0198 4.7964 17 6 5.0608 -0.3344 5.9553 18 7 4.7568 -1.6394 6.2136 19 6 5.1990 -2.3997 7.3852 20 6 3.9725 -2.1186 5.2121 21 7 2.3424 -2.2455 2.6148 22 8 1.7894 -1.9807 1.5682 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7088 1.1616 -3.4844 27 1 4.5297 0.9885 4.3219 28 1 5.6687 0.3065 6.5767 29 1 6.1471 -2.8896 7.1638 30 1 5.3282 -1.7229 8.2299 31 1 4.4505 -3.1522 7.6337 32 1 3.5749 -3.1203 5.1420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596598336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:27 Heat of formation + Delta-G solvation = 91.915532 kcal Electronic energy + Delta-G solvation = -17016.846560 eV Core-core repulsion = 14173.893443 eV Total energy + Delta-G solvation = -2842.953117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.23489 -42.13226 -37.03814 -36.47055 -34.19416 -33.32688 -31.56714 -29.81692 -27.64753 -27.35725 -25.13612 -24.81011 -22.66547 -21.22862 -20.48435 -19.08497 -18.64421 -18.04783 -17.53444 -16.79806 -16.16153 -15.63788 -15.34444 -14.80869 -14.54552 -13.84802 -13.69777 -13.62742 -13.53191 -13.16045 -13.05003 -13.00123 -12.83930 -12.60110 -12.46607 -12.25820 -12.07060 -11.82400 -11.43829 -10.81984 -10.55647 -9.49588 -9.16110 -8.20267 -6.37009 0.17648 0.89795 1.43698 1.47329 1.48046 1.56529 1.92920 2.13321 2.29984 2.42253 2.94421 3.10337 3.25647 3.99934 4.06573 4.26253 4.37811 4.49618 4.61755 4.73242 4.76035 4.76473 4.89773 4.97341 5.08660 5.19393 5.31752 5.42827 5.66107 5.72937 5.84718 6.03310 6.05995 6.37488 6.64188 7.31783 7.34585 8.85588 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045251 B = 0.004578 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.620900 B = 6114.369794 C = 6200.313238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.127 3.873 3 H 0.053 0.947 4 C -0.546 4.546 5 H 0.051 0.949 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.234 3.766 13 N -0.525 5.525 14 C 0.242 3.758 15 C -0.146 4.146 16 C -0.190 4.190 17 C 0.005 3.995 18 N -0.439 5.439 19 C 0.065 3.935 20 C 0.039 3.961 21 N -0.424 5.424 22 O 0.051 5.949 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.086 0.914 26 H 0.271 0.729 27 H 0.134 0.866 28 H 0.211 0.789 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -4.553 17.881 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.071 0.929 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.170 4.170 7 N -0.542 5.542 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.015 3.985 13 N -0.259 5.259 14 C -0.028 4.028 15 C -0.156 4.156 16 C -0.215 4.215 17 C -0.124 4.124 18 N -0.114 5.114 19 C -0.074 4.074 20 C -0.098 4.098 21 N -0.141 5.141 22 O 0.001 5.999 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.227 0.773 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.377 -5.065 18.642 20.679 hybrid contribution 0.011 -0.155 -1.342 1.351 sum 7.388 -5.221 17.300 19.522 Atomic orbital electron populations 1.21696 0.94417 1.00773 1.01617 1.17631 0.94771 0.94084 0.82820 0.92912 1.21021 1.33541 1.13338 0.90492 0.93094 1.25590 0.94512 0.95441 1.01456 1.69934 1.36009 1.23078 1.25165 0.85510 0.78606 0.78874 0.78125 1.19398 1.19872 1.20054 1.29826 0.90343 0.81494 0.96846 1.72062 1.19482 1.30197 1.04167 1.23794 0.97445 0.84840 0.96698 1.16983 1.07345 0.98301 0.92921 1.21010 1.03493 0.98599 0.98379 1.22274 1.05490 0.85616 0.99056 1.44215 1.37646 1.10715 1.18786 1.22467 1.02257 0.97618 0.85062 1.21877 0.99160 0.99171 0.89618 1.74736 1.16087 1.23793 0.99484 1.85177 1.55047 1.30269 1.29393 0.93908 0.94730 0.89536 0.91919 0.84800 0.77256 0.89246 0.86982 0.88424 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.95 71.98 0.64 -5.42 16 2 C 0.13 6.67 2.77 -12.29 -0.03 6.64 16 3 H 0.05 2.95 8.14 -2.39 -0.02 2.93 16 4 C -0.55 -30.26 8.55 25.60 0.22 -30.04 16 5 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 6 C 0.03 1.68 5.30 84.66 0.45 2.13 16 7 N -0.90 -49.46 11.32 21.45 0.24 -49.22 16 8 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.23 11.76 6.94 88.35 0.61 12.37 16 13 N -0.52 -25.80 11.58 -302.36 -3.50 -29.30 16 14 C 0.24 10.83 8.03 137.21 1.10 11.93 16 15 C -0.15 -5.25 6.12 -20.20 -0.12 -5.37 16 16 C -0.19 -5.81 10.84 22.33 0.24 -5.57 16 17 C 0.00 0.09 11.40 83.13 0.95 1.04 16 18 N -0.44 -8.39 3.14 -547.26 -1.72 -10.11 16 19 C 0.07 0.50 11.10 127.77 1.42 1.91 16 20 C 0.04 1.06 11.37 83.57 0.95 2.01 16 21 N -0.42 -19.40 12.19 -58.97 -0.72 -20.12 16 22 O 0.05 2.47 11.29 74.58 0.84 3.32 16 23 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 4.40 6.07 -2.39 -0.01 4.38 16 26 H 0.27 13.96 8.31 -92.71 -0.77 13.18 16 27 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.18 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -68.17 286.89 4.73 -63.44 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.13 Total: 5.75 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 6.43 Total: -8.37 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -5.69 Total: -108.75 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: 0.84 Total: 3.32 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -68.17 4.73 -63.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.358 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds