Wall clock time and date at job start Mon Mar 30 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 5 5 H 1.08005 * 119.99819 * 119.99676 * 4 2 1 6 6 C 1.37875 * 120.00046 * 300.00335 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 13 13 N 1.30971 * 126.43061 * 120.00361 * 12 2 1 14 14 C 1.35255 * 105.57811 * 179.97438 * 13 12 2 15 15 C 1.48262 * 126.42138 * 180.02562 * 14 13 12 16 16 C 1.41894 * 126.47860 * 359.69429 * 15 14 13 17 17 C 1.34566 * 107.29746 * 179.82603 * 16 15 14 18 18 N 1.36455 * 108.53229 * 0.43036 * 17 16 15 19 19 C 1.46505 * 125.47968 * 179.75257 * 18 17 16 20 20 C 1.35923 * 109.04336 * 359.72432 * 18 17 16 21 21 N 1.30856 * 107.15271 * 359.97438 * 14 13 12 22 22 O 1.21288 * 110.08142 * 359.70464 * 21 14 13 23 23 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 27 27 H 1.08007 * 126.34746 * 359.97438 * 16 15 14 28 28 H 1.08003 * 125.72949 * 180.15475 * 17 16 15 29 29 H 1.08991 * 109.47239 * 269.96629 * 19 18 17 30 30 H 1.09000 * 109.46656 * 29.96825 * 19 18 17 31 31 H 1.09001 * 109.46755 * 149.95946 * 19 18 17 32 32 H 1.08006 * 125.96506 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3214 -1.1202 4.0079 9 1 3.6297 -0.5458 4.4123 10 1 1.3432 -0.9491 5.1120 11 1 2.4858 -2.5661 3.7119 12 6 2.0323 -0.7104 -1.2305 13 7 2.7884 -0.1989 -2.1697 14 6 2.9832 -1.1961 -3.0625 15 6 3.7775 -1.1164 -4.3119 16 6 4.4712 0.0214 -4.7993 17 6 5.0616 -0.3347 -5.9549 18 7 4.7582 -1.6398 -6.2128 19 6 5.2059 -2.4021 -7.3811 20 6 3.9743 -2.1192 -5.2112 21 7 2.3401 -2.2448 -2.6162 22 8 1.7958 -1.9830 -1.5644 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1619 3.4843 27 1 4.5187 0.9924 -4.3286 28 1 5.6694 0.3064 -6.5763 29 1 4.4782 -2.2950 -8.1854 30 1 6.1727 -2.0237 -7.7130 31 1 5.3000 -3.4546 -7.1139 32 1 3.5772 -3.1211 -5.1407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596598337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:30 Heat of formation + Delta-G solvation = 91.876082 kcal Electronic energy + Delta-G solvation = -17017.137947 eV Core-core repulsion = 14174.183119 eV Total energy + Delta-G solvation = -2842.954828 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.23506 -42.13362 -37.03871 -36.47115 -34.19357 -33.32590 -31.56764 -29.81671 -27.64806 -27.35962 -25.13673 -24.80959 -22.66582 -21.22836 -20.48539 -19.07977 -18.64952 -18.05121 -17.53485 -16.79637 -16.16178 -15.63359 -15.34497 -14.81230 -14.54586 -13.84528 -13.69641 -13.63469 -13.52514 -13.16593 -13.05171 -13.00107 -12.85499 -12.59093 -12.46190 -12.25829 -12.07326 -11.82445 -11.42998 -10.81754 -10.55978 -9.49562 -9.16077 -8.20454 -6.37082 0.17653 0.89775 1.43749 1.46170 1.47496 1.58268 1.92911 2.13358 2.30038 2.42178 2.94413 3.10253 3.25656 3.99893 4.06517 4.26254 4.37775 4.49783 4.61731 4.73171 4.76041 4.76484 4.89691 4.97389 5.08699 5.19423 5.31756 5.42910 5.66170 5.72944 5.84677 6.03327 6.05940 6.37483 6.64366 7.31821 7.34579 8.85619 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045239 B = 0.004579 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.782536 B = 6113.440594 C = 6200.238624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.127 3.873 3 H 0.053 0.947 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.271 1.271 12 C 0.234 3.766 13 N -0.525 5.525 14 C 0.242 3.758 15 C -0.146 4.146 16 C -0.190 4.190 17 C 0.004 3.996 18 N -0.439 5.439 19 C 0.065 3.935 20 C 0.039 3.961 21 N -0.424 5.424 22 O 0.051 5.949 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.034 0.966 26 H 0.271 0.729 27 H 0.134 0.866 28 H 0.211 0.789 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.293 -4.585 -17.803 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.071 0.929 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.170 4.170 7 N -0.542 5.542 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.196 1.196 12 C 0.015 3.985 13 N -0.259 5.259 14 C -0.028 4.028 15 C -0.156 4.156 16 C -0.215 4.215 17 C -0.124 4.124 18 N -0.113 5.113 19 C -0.074 4.074 20 C -0.098 4.098 21 N -0.141 5.141 22 O 0.001 5.999 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.227 0.773 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.521 -5.101 -18.571 20.675 hybrid contribution -0.018 -0.137 1.329 1.337 sum 7.503 -5.237 -17.241 19.519 Atomic orbital electron populations 1.21693 0.94417 1.00773 1.01612 1.17638 0.94775 0.94091 0.82829 0.92904 1.21046 1.33448 1.13299 0.90484 0.93106 1.25591 0.94505 0.95465 1.01465 1.69942 1.36036 1.23129 1.25096 0.85448 0.78311 0.78862 0.78448 1.20030 1.19750 1.19616 1.29834 0.90430 0.81376 0.96880 1.72062 1.19339 1.30204 1.04287 1.23793 0.97307 0.84955 0.96723 1.16984 1.07416 0.98272 0.92882 1.21013 1.03558 0.98519 0.98391 1.22274 1.05550 0.85594 0.99026 1.44211 1.37595 1.10708 1.18834 1.22467 1.02721 0.97270 0.84943 1.21875 0.99220 0.99248 0.89492 1.74738 1.16201 1.23944 0.99225 1.85178 1.55610 1.30106 1.28997 0.93902 0.89530 0.94743 0.91932 0.84797 0.77254 0.89115 0.87042 0.88492 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.95 71.98 0.64 -5.42 16 2 C 0.13 6.65 2.77 -12.29 -0.03 6.62 16 3 H 0.05 2.95 8.14 -2.39 -0.02 2.93 16 4 C -0.54 -30.19 8.55 25.60 0.22 -29.97 16 5 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 6 C 0.03 1.66 5.30 84.65 0.45 2.11 16 7 N -0.90 -49.43 11.32 21.45 0.24 -49.19 16 8 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 C 0.23 11.76 6.94 88.36 0.61 12.37 16 13 N -0.52 -25.79 11.58 -302.35 -3.50 -29.29 16 14 C 0.24 10.83 8.03 137.21 1.10 11.93 16 15 C -0.15 -5.25 6.12 -20.20 -0.12 -5.37 16 16 C -0.19 -5.81 10.84 22.33 0.24 -5.57 16 17 C 0.00 0.09 11.40 83.13 0.95 1.04 16 18 N -0.44 -8.39 3.14 -547.26 -1.72 -10.10 16 19 C 0.07 0.50 11.10 127.77 1.42 1.91 16 20 C 0.04 1.05 11.37 83.57 0.95 2.00 16 21 N -0.42 -19.42 12.19 -58.98 -0.72 -20.14 16 22 O 0.05 2.47 11.29 74.57 0.84 3.32 16 23 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.09 4.40 6.07 -2.39 -0.01 4.39 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.18 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -68.20 286.89 4.73 -63.47 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.13 Total: 5.65 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 6.43 Total: -8.33 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.69 Total: -108.72 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: 0.84 Total: 3.32 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.20 4.73 -63.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.348 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds