Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 119.99903 * 2 1 4 4 H 1.48500 * 109.46899 * 240.00388 * 3 2 1 5 5 H 1.48501 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47425 * 120.00243 * 3 2 1 7 7 C 1.39945 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99661 * 197.84270 * 7 2 1 9 9 C 1.41388 * 120.00055 * 17.84914 * 7 2 1 10 10 C 1.40719 * 120.24364 * 204.38013 * 9 7 2 11 11 C 1.37618 * 119.74708 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24678 * 0.02782 * 11 10 9 13 13 C 1.50703 * 119.74685 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.47003 * 89.99656 * 13 12 11 15 15 O 1.46293 * 110.99715 * 179.97438 * 14 13 12 16 16 C 1.42900 * 114.00045 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47361 * 180.02562 * 16 15 14 18 18 C 1.53001 * 117.49555 * 243.61966 * 17 16 15 19 19 C 1.52994 * 60.00109 * 252.50751 * 18 17 16 20 20 C 1.38627 * 120.50376 * 0.24723 * 12 11 10 21 21 C 1.37633 * 120.24659 * 359.44764 * 20 12 11 22 22 H 0.96996 * 120.00036 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.12550 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.87416 * 179.97438 * 11 10 9 25 25 H 1.08999 * 109.46948 * 329.99771 * 13 12 11 26 26 H 1.08994 * 109.46842 * 209.99878 * 13 12 11 27 27 H 1.00902 * 111.00068 * 303.95301 * 14 13 12 28 28 H 1.08995 * 109.47559 * 59.99753 * 16 15 14 29 29 H 1.09001 * 109.47114 * 299.99629 * 16 15 14 30 30 H 1.08999 * 115.55043 * 29.32358 * 17 16 15 31 31 H 1.08995 * 117.49817 * 359.97438 * 18 17 16 32 32 H 1.09005 * 117.49978 * 145.02150 * 18 17 16 33 33 H 1.09001 * 117.49946 * 252.51375 * 19 18 17 34 34 H 1.08997 * 117.50215 * 107.48671 * 19 18 17 35 35 H 1.07994 * 119.87939 * 179.70490 * 20 12 11 36 36 H 1.08001 * 120.12363 * 180.27150 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2343 0.2871 9 6 1.3520 -2.4071 -0.3742 10 6 1.8258 -3.6498 0.0855 11 6 1.1798 -4.8068 -0.2860 12 6 0.0667 -4.7511 -1.1105 13 6 -0.6317 -6.0252 -1.5108 14 7 -1.6776 -6.3398 -0.5284 15 8 -2.3788 -7.5729 -0.8859 16 6 -3.4132 -7.9396 0.0294 17 6 -4.0739 -9.2370 -0.4408 18 6 -5.5519 -9.1758 -0.8313 19 6 -5.1325 -9.8614 0.4705 20 6 -0.4055 -3.5330 -1.5740 21 6 0.2210 -2.3628 -1.2102 22 1 -0.4850 0.8400 0.0004 23 1 2.6931 -3.6955 0.7276 24 1 1.5419 -5.7617 0.0653 25 1 0.0911 -6.8402 -1.5456 26 1 -1.0836 -5.8980 -2.4945 27 1 -1.2932 -6.3989 0.4027 28 1 -4.1592 -7.1462 0.0716 29 1 -2.9851 -8.0889 1.0206 30 1 -3.4318 -9.9143 -1.0040 31 1 -6.0537 -8.2114 -0.7529 32 1 -5.8826 -9.8129 -1.6517 33 1 -5.1870 -10.9494 0.5066 34 1 -5.3581 -9.3479 1.4051 35 1 -1.2706 -3.5017 -2.2196 36 1 -0.1512 -1.4145 -1.5689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688472850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = 19.368553 kcal Electronic energy + Delta-G solvation = -16622.763631 eV Core-core repulsion = 13880.204984 eV Total energy + Delta-G solvation = -2742.558647 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62178 -38.85957 -37.19424 -35.84565 -33.93458 -31.34392 -30.94796 -28.12635 -26.96619 -24.65366 -23.25381 -22.88447 -21.85883 -21.43393 -19.23776 -18.34765 -17.19500 -16.86276 -16.39088 -16.15352 -15.69769 -15.52235 -15.28468 -14.79014 -14.28829 -14.16647 -13.83148 -13.49392 -13.35464 -12.76563 -12.70373 -12.56057 -12.41698 -12.22660 -12.07695 -11.86563 -11.52200 -11.35195 -11.26416 -11.02122 -10.75395 -9.68343 -9.38489 -9.23646 -8.65507 -6.36092 0.83333 1.13326 1.38322 1.46232 1.51180 1.82982 2.20425 2.72582 2.87325 3.68666 3.80552 3.92516 3.99719 4.11449 4.25730 4.33290 4.48375 4.53737 4.55807 4.63795 4.71074 4.77426 4.86010 5.00492 5.05119 5.14146 5.22482 5.24311 5.34841 5.42193 5.63972 5.69504 5.91953 6.08648 6.21129 6.34503 6.36222 6.68296 6.91936 7.01157 8.30916 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.047658 B = 0.003505 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.379846 B = 7987.331296 C = 8259.535960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.084 3.916 10 C -0.243 4.243 11 C -0.077 4.077 12 C -0.210 4.210 13 C 0.126 3.874 14 N -0.508 5.508 15 O -0.274 6.274 16 C 0.089 3.911 17 C -0.169 4.169 18 C -0.177 4.177 19 C -0.157 4.157 20 C -0.080 4.080 21 C -0.192 4.192 22 H 0.289 0.711 23 H 0.100 0.900 24 H 0.118 0.882 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.336 0.664 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -11.872 0.449 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.081 3.919 10 C -0.262 4.262 11 C -0.096 4.096 12 C -0.212 4.212 13 C -0.001 4.001 14 N -0.179 5.179 15 O -0.282 6.282 16 C 0.012 3.988 17 C -0.189 4.189 18 C -0.214 4.214 19 C -0.194 4.194 20 C -0.099 4.099 21 C -0.212 4.212 22 H 0.100 0.900 23 H 0.118 0.882 24 H 0.136 0.864 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.235 -11.453 -0.020 13.547 hybrid contribution 1.004 0.377 0.505 1.185 sum -6.232 -11.075 0.485 12.717 Atomic orbital electron populations 1.69877 1.09070 1.30762 1.34954 1.26798 0.95488 1.04634 0.91162 0.85238 0.78781 0.75523 0.80098 1.18495 1.19185 1.18263 1.19867 0.98463 0.92529 1.41879 0.90425 1.18006 0.91730 0.93194 0.88945 1.21155 1.04587 0.92966 1.07531 1.20705 0.95126 0.97122 0.96620 1.18976 1.00371 0.93002 1.08854 1.20579 0.90571 0.93635 0.95363 1.66966 1.31536 1.13284 1.06128 1.90674 1.49794 1.39494 1.48268 1.22029 0.89568 0.94836 0.92376 1.22092 0.92448 0.97974 1.06383 1.23166 0.95681 1.03065 0.99526 1.23085 1.00302 1.01148 0.94821 1.20748 0.97881 0.92405 0.98858 1.21275 1.00493 0.96963 1.02471 0.90017 0.88190 0.86437 0.93595 0.90570 0.84782 0.93069 0.92542 0.87484 0.88713 0.87571 0.86795 0.87952 0.87908 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.13 10.95 21.83 0.24 -42.90 16 2 C 0.03 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 38.00 29.60 68.60 2.03 40.03 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.50 -26.87 9.05 23.46 0.21 -26.66 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.08 4.54 5.57 -21.29 -0.12 4.42 16 10 C -0.24 -11.81 9.80 22.73 0.22 -11.58 16 11 C -0.08 -3.29 9.67 22.22 0.21 -3.07 16 12 C -0.21 -8.89 5.41 -19.68 -0.11 -8.99 16 13 C 0.13 4.52 6.34 85.56 0.54 5.06 16 14 N -0.51 -17.49 7.32 -190.00 -1.39 -18.88 16 15 O -0.27 -8.83 11.28 -50.14 -0.57 -9.40 16 16 C 0.09 2.26 6.67 71.98 0.48 2.74 16 17 C -0.17 -3.46 6.06 -10.79 -0.07 -3.52 16 18 C -0.18 -3.03 10.18 30.59 0.31 -2.72 16 19 C -0.16 -2.33 10.25 30.59 0.31 -2.02 16 20 C -0.08 -3.77 9.67 22.22 0.21 -3.55 16 21 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 22 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 23 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 24 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 25 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 26 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 27 H 0.34 10.89 8.91 -89.69 -0.80 10.09 16 28 H 0.05 1.34 7.88 -2.39 -0.02 1.32 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 32 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.10 5.62 6.16 -2.91 -0.02 5.61 16 Total: -1.00 -58.80 311.20 3.44 -55.36 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.27 Total: 33.55 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 2.86 Total: -57.76 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -1.15 Total: -61.78 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.57 Total: -9.40 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -58.80 3.44 -55.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688472850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.725 kcal (2) G-P(sol) polarization free energy of solvation -58.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds