Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48502 * 109.47119 * 90.00071 * 3 2 1 5 5 H 1.48501 * 109.47174 * 209.99668 * 3 2 1 6 6 H 1.48501 * 109.47284 * 330.00082 * 3 2 1 7 7 C 1.37884 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 180.94699 * 7 2 1 9 9 C 1.50699 * 119.99692 * 0.94905 * 7 2 1 10 10 H 1.09001 * 109.46934 * 328.97539 * 9 7 2 11 11 N 1.46902 * 109.47332 * 88.97294 * 9 7 2 12 12 O 1.46303 * 110.99649 * 52.49901 * 11 9 7 13 13 C 1.42900 * 113.99950 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47222 * 179.97438 * 13 12 11 15 15 C 1.52998 * 117.50069 * 243.74856 * 14 13 12 16 16 C 1.53004 * 117.49694 * 175.08527 * 14 13 12 17 17 C 1.50699 * 109.46861 * 208.97589 * 9 7 2 18 18 C 1.38236 * 119.99731 * 288.72899 * 17 9 7 19 19 C 1.38239 * 119.99820 * 179.79360 * 18 17 9 20 20 C 1.38235 * 119.99730 * 0.43007 * 19 18 17 21 21 C 1.38235 * 120.00340 * 359.82171 * 20 19 18 22 22 C 1.38232 * 120.00265 * 108.99889 * 17 9 7 23 23 H 0.96998 * 119.99867 * 176.65883 * 1 2 3 24 24 H 1.00898 * 110.99909 * 176.44920 * 11 9 7 25 25 H 1.09001 * 109.47025 * 300.00686 * 13 12 11 26 26 H 1.09002 * 109.46640 * 59.99848 * 13 12 11 27 27 H 1.09000 * 115.54786 * 29.42528 * 14 13 12 28 28 H 1.08992 * 117.49929 * 359.97438 * 15 14 13 29 29 H 1.08994 * 117.49991 * 145.02571 * 15 14 13 30 30 H 1.09001 * 117.49693 * 214.97664 * 16 14 13 31 31 H 1.08997 * 117.50165 * 0.02562 * 16 14 13 32 32 H 1.08002 * 120.00295 * 359.97438 * 18 17 9 33 33 H 1.07999 * 120.00053 * 180.27620 * 19 18 17 34 34 H 1.08004 * 120.00037 * 179.83751 * 20 19 18 35 35 H 1.07998 * 120.00197 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00030 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0160 9 6 1.2513 -2.4991 -0.0205 10 1 0.2995 -2.3775 0.4965 11 7 1.0048 -2.8999 -1.4121 12 8 2.2470 -2.9010 -2.1852 13 6 2.0806 -3.2831 -3.5520 14 6 3.4364 -3.2483 -4.2600 15 6 3.6124 -2.2435 -5.4002 16 6 3.4896 -3.7379 -5.7086 17 6 2.0667 -3.5609 0.6713 18 6 3.2079 -4.0575 0.0695 19 6 3.9583 -5.0285 0.7060 20 6 3.5625 -5.5092 1.9402 21 6 2.4185 -5.0164 2.5395 22 6 1.6705 -4.0424 1.9050 23 1 -0.4850 -0.8386 -0.0490 24 1 0.5520 -3.8006 -1.4542 25 1 1.6709 -4.2921 -3.5999 26 1 1.3971 -2.5899 -4.0424 27 1 4.3017 -3.4498 -3.6286 28 1 2.7621 -1.6075 -5.6463 29 1 4.5936 -1.7841 -5.5192 30 1 4.3903 -4.2609 -6.0303 31 1 2.5587 -4.0843 -6.1574 32 1 3.5149 -3.6847 -0.8965 33 1 4.8523 -5.4132 0.2379 34 1 4.1473 -6.2697 2.4363 35 1 2.1091 -5.3924 3.5036 36 1 0.7768 -3.6574 2.3733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688522764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = 48.980248 kcal Electronic energy + Delta-G solvation = -17828.446356 eV Core-core repulsion = 15087.171768 eV Total energy + Delta-G solvation = -2741.274588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.69665 -37.50956 -35.62986 -33.80225 -31.45157 -30.25495 -28.98307 -26.17428 -25.13913 -22.70817 -22.25679 -21.85223 -20.48688 -20.10690 -17.10783 -16.46945 -16.07673 -15.22052 -14.78306 -14.54659 -14.30067 -13.87977 -13.70655 -13.19313 -12.91276 -12.66808 -12.46676 -12.11004 -11.59880 -11.44985 -11.03985 -10.79197 -10.70210 -10.49519 -10.45974 -10.25214 -10.10895 -9.94517 -9.26779 -8.90470 -8.47625 -8.29739 -7.92684 -7.48554 -6.36189 -4.07619 2.01588 2.04596 3.44746 3.48846 3.59848 3.66735 4.01701 4.44975 4.56987 4.97991 5.07046 5.11089 5.40650 5.45203 5.49680 5.60427 5.63882 5.69598 5.88479 5.93913 6.01585 6.04793 6.11850 6.20911 6.22359 6.37911 6.50278 6.57396 6.66690 6.90616 7.05131 7.14863 7.44730 7.66554 7.80229 7.88135 8.44074 8.50690 8.87218 9.63515 11.02505 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.010305 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.837564 B = 2716.601941 C = 4408.825395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 1.072 2.928 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.557 4.557 8 H 0.052 0.948 9 C 0.218 3.782 10 H 0.080 0.920 11 N -0.489 5.489 12 O -0.231 6.231 13 C 0.088 3.912 14 C -0.143 4.143 15 C -0.175 4.175 16 C -0.179 4.179 17 C -0.073 4.073 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.146 4.146 21 C -0.128 4.128 22 C -0.125 4.125 23 H 0.272 0.728 24 H 0.290 0.710 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -8.880 -4.284 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.175 4.175 3 Si 0.901 3.099 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.596 4.596 8 H 0.070 0.930 9 C 0.112 3.888 10 H 0.098 0.902 11 N -0.160 5.160 12 O -0.237 6.237 13 C 0.010 3.990 14 C -0.163 4.163 15 C -0.212 4.212 16 C -0.216 4.216 17 C -0.075 4.075 18 C -0.129 4.129 19 C -0.149 4.149 20 C -0.164 4.164 21 C -0.146 4.146 22 C -0.144 4.144 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.815 -6.530 -4.373 9.217 hybrid contribution 0.525 -2.677 0.276 2.742 sum 5.340 -9.207 -4.097 11.405 Atomic orbital electron populations 1.70751 1.06857 1.30957 1.45087 1.25827 0.96434 1.02526 0.92673 0.83506 0.74867 0.74957 0.76608 1.21564 1.21354 1.21020 1.21577 0.94018 0.89456 1.54581 0.92953 1.18967 0.95909 0.92141 0.81742 0.90244 1.67880 1.06027 1.28004 1.14064 1.90835 1.24159 1.90375 1.18319 1.21755 0.94229 0.97683 0.85346 1.22112 0.99344 1.04505 0.90296 1.23034 1.03164 0.91983 1.02999 1.22953 1.02913 0.97645 0.98136 1.21259 0.96239 0.95087 0.94925 1.21542 0.94471 0.95895 1.01022 1.21104 0.99669 0.98431 0.95736 1.20910 0.97740 1.01374 0.96363 1.20979 0.95985 0.98249 0.99436 1.21076 1.00260 0.97336 0.95708 0.91670 0.89532 0.94571 0.93227 0.87409 0.88566 0.88920 0.88885 0.88941 0.84519 0.87301 0.87356 0.87161 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.62 55.43 0.75 -25.75 16 2 C 0.03 0.90 5.46 -17.82 -0.10 0.80 16 3 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.56 -15.45 7.77 -34.44 -0.27 -15.71 16 8 H 0.05 1.52 7.77 -52.49 -0.41 1.11 16 9 C 0.22 5.32 2.66 -70.02 -0.19 5.14 16 10 H 0.08 2.04 6.35 -51.93 -0.33 1.71 16 11 N -0.49 -11.10 7.10 -6.65 -0.05 -11.14 16 12 O -0.23 -5.06 7.50 -13.92 -0.10 -5.16 16 13 C 0.09 1.56 6.67 37.15 0.25 1.80 16 14 C -0.14 -2.16 6.05 -90.62 -0.55 -2.71 16 15 C -0.17 -2.35 10.18 -26.69 -0.27 -2.62 16 16 C -0.18 -2.14 10.26 -26.69 -0.27 -2.41 16 17 C -0.07 -1.60 4.87 -104.63 -0.51 -2.11 16 18 C -0.11 -2.31 8.98 -39.58 -0.36 -2.66 16 19 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 20 C -0.15 -2.42 10.05 -39.58 -0.40 -2.81 16 21 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 22 C -0.13 -2.47 9.67 -39.59 -0.38 -2.86 16 23 H 0.27 7.90 6.62 -40.82 -0.27 7.63 16 24 H 0.29 5.86 8.91 -39.29 -0.35 5.51 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 27 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.10 1.31 8.03 -51.93 -0.42 0.90 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.14 2.97 5.45 -52.49 -0.29 2.69 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.11 2.14 7.98 -52.49 -0.42 1.72 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -30.07 306.01 -8.77 -38.84 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.07 Total: 9.62 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -3.84 Total: -31.50 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.71 Total: -36.89 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.10 Total: -5.16 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.07 -8.77 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688522764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.820 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds