Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48502 * 109.47119 * 90.00071 * 3 2 1 5 5 H 1.48501 * 109.47174 * 209.99668 * 3 2 1 6 6 H 1.48501 * 109.47284 * 330.00082 * 3 2 1 7 7 C 1.37884 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 180.94699 * 7 2 1 9 9 C 1.50699 * 119.99692 * 0.94905 * 7 2 1 10 10 H 1.09001 * 109.46934 * 328.97539 * 9 7 2 11 11 N 1.46902 * 109.47332 * 88.97294 * 9 7 2 12 12 O 1.46303 * 110.99649 * 52.49901 * 11 9 7 13 13 C 1.42900 * 113.99950 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47222 * 179.97438 * 13 12 11 15 15 C 1.52998 * 117.50069 * 243.74856 * 14 13 12 16 16 C 1.53004 * 117.49694 * 175.08527 * 14 13 12 17 17 C 1.50699 * 109.46861 * 208.97589 * 9 7 2 18 18 C 1.38236 * 119.99731 * 288.72899 * 17 9 7 19 19 C 1.38239 * 119.99820 * 179.79360 * 18 17 9 20 20 C 1.38235 * 119.99730 * 0.43007 * 19 18 17 21 21 C 1.38235 * 120.00340 * 359.82171 * 20 19 18 22 22 C 1.38232 * 120.00265 * 108.99889 * 17 9 7 23 23 H 0.96998 * 119.99867 * 176.65883 * 1 2 3 24 24 H 1.00898 * 110.99909 * 176.44920 * 11 9 7 25 25 H 1.09001 * 109.47025 * 300.00686 * 13 12 11 26 26 H 1.09002 * 109.46640 * 59.99848 * 13 12 11 27 27 H 1.09000 * 115.54786 * 29.42528 * 14 13 12 28 28 H 1.08992 * 117.49929 * 359.97438 * 15 14 13 29 29 H 1.08994 * 117.49991 * 145.02571 * 15 14 13 30 30 H 1.09001 * 117.49693 * 214.97664 * 16 14 13 31 31 H 1.08997 * 117.50165 * 0.02562 * 16 14 13 32 32 H 1.08002 * 120.00295 * 359.97438 * 18 17 9 33 33 H 1.07999 * 120.00053 * 180.27620 * 19 18 17 34 34 H 1.08004 * 120.00037 * 179.83751 * 20 19 18 35 35 H 1.07998 * 120.00197 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00030 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0160 9 6 1.2513 -2.4991 -0.0205 10 1 0.2995 -2.3775 0.4965 11 7 1.0048 -2.8999 -1.4121 12 8 2.2470 -2.9010 -2.1852 13 6 2.0806 -3.2831 -3.5520 14 6 3.4364 -3.2483 -4.2600 15 6 3.6124 -2.2435 -5.4002 16 6 3.4896 -3.7379 -5.7086 17 6 2.0667 -3.5609 0.6713 18 6 3.2079 -4.0575 0.0695 19 6 3.9583 -5.0285 0.7060 20 6 3.5625 -5.5092 1.9402 21 6 2.4185 -5.0164 2.5395 22 6 1.6705 -4.0424 1.9050 23 1 -0.4850 -0.8386 -0.0490 24 1 0.5520 -3.8006 -1.4542 25 1 1.6709 -4.2921 -3.5999 26 1 1.3971 -2.5899 -4.0424 27 1 4.3017 -3.4498 -3.6286 28 1 2.7621 -1.6075 -5.6463 29 1 4.5936 -1.7841 -5.5192 30 1 4.3903 -4.2609 -6.0303 31 1 2.5587 -4.0843 -6.1574 32 1 3.5149 -3.6847 -0.8965 33 1 4.8523 -5.4132 0.2379 34 1 4.1473 -6.2697 2.4363 35 1 2.1091 -5.3924 3.5036 36 1 0.7768 -3.6574 2.3733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688522764.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 32.104229 kcal Electronic energy + Delta-G solvation = -17829.178155 eV Core-core repulsion = 15087.171768 eV Total energy + Delta-G solvation = -2742.006387 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22911 -38.76242 -37.22479 -35.61579 -33.32812 -31.71079 -30.56784 -27.76330 -27.01320 -24.49862 -23.33098 -23.26259 -22.01531 -21.48298 -19.03839 -18.05738 -17.66776 -16.63074 -16.20601 -16.09325 -15.80896 -15.62904 -15.16928 -14.90034 -14.46613 -14.24134 -14.08378 -13.59252 -13.24946 -12.74954 -12.60947 -12.43259 -12.16123 -12.08593 -11.96331 -11.87240 -11.52975 -11.33831 -10.90550 -10.66279 -10.58381 -9.75923 -9.58053 -9.20518 -8.56825 -6.28725 0.54102 0.57498 1.51044 1.59872 1.78214 2.00582 2.56087 2.87488 2.99837 3.26420 3.83489 3.93148 4.04514 4.06398 4.11630 4.21683 4.32879 4.37248 4.51085 4.62679 4.71288 4.73432 4.76262 4.86911 4.90992 4.98453 5.17629 5.21567 5.23330 5.30024 5.60361 5.66045 5.83166 5.86232 6.12495 6.21632 6.25383 6.54779 6.82599 7.48760 8.81604 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.010305 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.837564 B = 2716.601941 C = 4408.825395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.016 4.016 3 Si 1.112 2.888 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.564 4.564 8 H 0.032 0.968 9 C 0.223 3.777 10 H 0.056 0.944 11 N -0.500 5.500 12 O -0.246 6.246 13 C 0.085 3.915 14 C -0.169 4.169 15 C -0.181 4.181 16 C -0.146 4.146 17 C -0.102 4.102 18 C -0.129 4.129 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.142 4.142 23 H 0.261 0.739 24 H 0.304 0.696 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 -10.620 -4.219 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.116 3.884 10 H 0.074 0.926 11 N -0.170 5.170 12 O -0.254 6.254 13 C 0.008 3.992 14 C -0.189 4.189 15 C -0.218 4.218 16 C -0.183 4.183 17 C -0.104 4.104 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.160 4.160 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.618 -8.290 -4.304 11.448 hybrid contribution 0.017 -2.299 0.221 2.310 sum 6.635 -10.590 -4.083 13.146 Atomic orbital electron populations 1.70851 1.07507 1.30347 1.47691 1.27045 0.96618 1.05720 0.92236 0.82992 0.74048 0.71896 0.77560 1.19785 1.20637 1.20774 1.21720 0.93093 0.91317 1.54126 0.95007 1.18650 0.94860 0.92217 0.82663 0.92614 1.67502 1.06903 1.28997 1.13555 1.90822 1.23413 1.90830 1.20289 1.21953 0.95971 0.97941 0.83374 1.22055 0.97454 1.07735 0.91627 1.23130 1.03597 0.93102 1.01969 1.23075 1.04534 0.96243 0.94440 1.21055 0.97132 0.95987 0.96212 1.21462 0.94911 0.97461 1.00883 1.21429 0.99985 0.97154 0.96235 1.21405 0.97229 1.01060 0.95464 1.21374 0.95481 0.96677 1.00465 1.21212 1.01001 0.98556 0.95258 0.92792 0.88102 0.93120 0.94508 0.88109 0.89232 0.87746 0.86467 0.87809 0.86333 0.84451 0.83098 0.83627 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.62 21.45 0.29 -56.24 16 2 C -0.02 -0.91 5.46 84.66 0.46 -0.45 16 3 Si 1.11 52.48 29.90 68.60 2.05 54.53 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.56 -32.51 7.77 25.60 0.20 -32.31 16 8 H 0.03 1.91 7.77 -2.91 -0.02 1.89 16 9 C 0.22 11.40 2.66 43.42 0.12 11.51 16 10 H 0.06 3.07 6.35 -2.39 -0.02 3.05 16 11 N -0.50 -23.70 7.10 -174.95 -1.24 -24.94 16 12 O -0.25 -11.15 7.50 -50.17 -0.38 -11.53 16 13 C 0.09 3.06 6.67 71.98 0.48 3.54 16 14 C -0.17 -5.03 6.05 -10.80 -0.07 -5.09 16 15 C -0.18 -4.67 10.18 30.62 0.31 -4.36 16 16 C -0.15 -3.12 10.26 30.62 0.31 -2.81 16 17 C -0.10 -4.57 4.87 -19.87 -0.10 -4.67 16 18 C -0.13 -5.35 8.98 22.27 0.20 -5.15 16 19 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 20 C -0.13 -3.90 10.05 22.27 0.22 -3.67 16 21 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 22 C -0.14 -5.57 9.67 22.27 0.22 -5.35 16 23 H 0.26 16.00 6.62 -92.71 -0.61 15.39 16 24 H 0.30 12.82 8.91 -89.70 -0.80 12.02 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.39 7.87 -2.39 -0.02 1.37 16 27 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 29 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 5.30 5.45 -2.91 -0.02 5.29 16 33 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.11 4.30 7.98 -2.91 -0.02 4.28 16 Total: -1.00 -67.36 306.01 3.96 -63.40 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.43 Total: 31.30 kcal Atomic # 6 Polarization: -59.32 SS G_CDS: 2.81 Total: -56.52 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -0.95 Total: -81.18 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.38 Total: -11.53 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 2.05 Total: 54.53 kcal Total: -67.36 3.96 -63.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688522764.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.507 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds