Wall clock time and date at job start Mon Mar 30 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48508 * 109.47046 * 265.82951 * 3 2 1 5 5 H 1.48499 * 109.47460 * 25.82918 * 3 2 1 6 6 H 1.48496 * 109.47373 * 145.82965 * 3 2 1 7 7 C 1.37884 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99580 * 354.21657 * 7 2 1 9 9 C 1.50696 * 119.99914 * 174.21476 * 7 2 1 10 10 H 1.08999 * 109.47335 * 354.85120 * 9 7 2 11 11 N 1.46903 * 109.46970 * 234.85067 * 9 7 2 12 12 O 1.46307 * 110.99737 * 89.99974 * 11 9 7 13 13 C 1.42894 * 113.99716 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47093 * 180.02562 * 13 12 11 15 15 C 1.52994 * 117.50108 * 116.25367 * 14 13 12 16 16 C 1.53001 * 117.49993 * 184.91476 * 14 13 12 17 17 C 1.50703 * 109.46936 * 114.85481 * 9 7 2 18 18 C 1.38234 * 119.99647 * 73.75958 * 17 9 7 19 19 C 1.38244 * 119.99579 * 179.80977 * 18 17 9 20 20 C 1.38239 * 119.99490 * 0.39318 * 19 18 17 21 21 C 1.38235 * 120.00572 * 359.85935 * 20 19 18 22 22 C 1.38230 * 119.99678 * 254.02747 * 17 9 7 23 23 H 0.96994 * 119.99817 * 0.02562 * 1 2 3 24 24 H 1.00897 * 111.00501 * 213.95789 * 11 9 7 25 25 H 1.09006 * 109.47529 * 60.00275 * 13 12 11 26 26 H 1.09000 * 109.47463 * 300.00145 * 13 12 11 27 27 H 1.08998 * 115.54809 * 330.58143 * 14 13 12 28 28 H 1.09000 * 117.50043 * 215.00553 * 15 14 13 29 29 H 1.09005 * 117.50129 * 0.02562 * 15 14 13 30 30 H 1.09002 * 117.49791 * 359.97218 * 16 14 13 31 31 H 1.09005 * 117.49769 * 144.99526 * 16 14 13 32 32 H 1.07997 * 120.00320 * 359.97438 * 18 17 9 33 33 H 1.07994 * 120.00170 * 180.22886 * 19 18 17 34 34 H 1.08003 * 119.99597 * 179.83624 * 20 19 18 35 35 H 1.07991 * 120.00082 * 179.97438 * 21 20 19 36 36 H 1.07993 * 120.00431 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5848 1.9954 -1.3964 5 1 1.4053 2.6765 0.6100 6 1 3.4998 1.4672 0.7863 7 6 2.0046 -1.1941 0.0005 8 1 1.4687 -2.1270 0.0952 9 6 3.5058 -1.1974 -0.1310 10 1 3.8574 -0.1807 -0.3065 11 7 3.8965 -2.0524 -1.2599 12 8 3.9648 -1.2821 -2.5019 13 6 4.3410 -2.0537 -3.6443 14 6 4.3805 -1.1508 -4.8789 15 6 5.7323 -0.9554 -5.5683 16 6 4.6520 -1.8141 -6.2307 17 6 4.1201 -1.7294 1.1382 18 6 4.0564 -3.0805 1.4232 19 6 4.6233 -3.5691 2.5856 20 6 5.2467 -2.7052 3.4666 21 6 5.3058 -1.3534 3.1840 22 6 4.7422 -0.8654 2.0198 23 1 -0.4849 0.8400 -0.0004 24 1 4.7721 -2.5182 -1.0747 25 1 3.6140 -2.8509 -3.7999 26 1 5.3271 -2.4881 -3.4807 27 1 3.6963 -0.3025 -4.8630 28 1 5.9375 0.0216 -6.0058 29 1 6.5935 -1.4703 -5.1425 30 1 4.8030 -2.8935 -6.2404 31 1 4.1465 -1.4019 -7.1041 32 1 3.5661 -3.7548 0.7367 33 1 4.5769 -4.6252 2.8066 34 1 5.6873 -3.0865 4.3759 35 1 5.7924 -0.6786 3.8724 36 1 4.7885 0.1906 1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688522765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:42 Heat of formation + Delta-G solvation = 51.476685 kcal Electronic energy + Delta-G solvation = -17469.121447 eV Core-core repulsion = 14727.955113 eV Total energy + Delta-G solvation = -2741.166334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.74456 -37.61937 -35.67458 -33.76319 -31.85558 -30.33966 -29.12550 -26.72013 -25.58011 -22.58120 -22.35003 -21.93027 -20.51128 -19.80474 -17.00190 -16.81979 -15.97271 -15.58148 -14.98005 -14.65659 -14.28685 -14.11263 -13.76554 -13.19046 -12.85518 -12.78753 -12.60725 -12.28150 -11.93841 -11.54049 -11.18090 -10.98695 -10.92073 -10.60470 -10.42639 -10.34572 -10.21872 -9.87717 -9.67983 -9.28969 -8.65736 -8.34960 -8.03277 -7.59997 -6.15715 -4.13100 1.95768 1.98674 3.25473 3.31908 3.34699 3.42722 3.90430 4.35153 4.41139 4.89876 4.98915 5.01353 5.15946 5.43353 5.46245 5.52682 5.59276 5.62709 5.80636 5.86753 5.93590 6.03988 6.09508 6.13724 6.14668 6.17246 6.38285 6.44673 6.61312 6.67712 7.02163 7.04499 7.26035 7.43248 7.62392 7.68831 8.16197 8.49296 8.94917 9.45869 10.96190 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.007620 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.403998 B = 3673.534829 C = 4731.269472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.205 3.795 10 H 0.040 0.960 11 N -0.487 5.487 12 O -0.253 6.253 13 C 0.094 3.906 14 C -0.146 4.146 15 C -0.182 4.182 16 C -0.174 4.174 17 C -0.048 4.048 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.122 4.122 22 C -0.128 4.128 23 H 0.266 0.734 24 H 0.300 0.700 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.850 -3.579 -3.008 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.514 4.514 8 H 0.100 0.900 9 C 0.098 3.902 10 H 0.058 0.942 11 N -0.159 5.159 12 O -0.258 6.258 13 C 0.016 3.984 14 C -0.165 4.165 15 C -0.219 4.219 16 C -0.211 4.211 17 C -0.050 4.050 18 C -0.125 4.125 19 C -0.142 4.142 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.146 4.146 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.970 -3.450 -3.162 11.927 hybrid contribution 1.191 1.265 0.225 1.752 sum 12.162 -2.185 -2.937 12.701 Atomic orbital electron populations 1.69885 1.06220 1.27237 1.48801 1.25051 0.94776 0.98927 0.93800 0.86912 0.80027 0.83792 0.79021 1.19732 1.21346 1.19127 1.20660 0.87131 0.95011 1.48603 0.89992 1.18856 0.96932 0.92199 0.82166 0.94220 1.67788 1.30444 1.23242 0.94400 1.90833 1.91404 1.30978 1.12632 1.21749 0.97994 0.93755 0.84897 1.22185 0.99778 1.02456 0.92129 1.23061 0.92880 1.01398 1.04605 1.22942 1.03147 0.99211 0.95780 1.20412 0.92995 0.93447 0.98111 1.21027 0.98936 0.95402 0.97119 1.21069 0.99135 0.99087 0.94948 1.20926 1.02012 0.93745 0.99550 1.20974 1.00623 0.95418 0.97049 1.21099 0.98888 0.99596 0.95036 0.92352 0.88517 0.92468 0.94446 0.86902 0.88946 0.88922 0.88749 0.88646 0.85717 0.86854 0.87105 0.86977 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.96 13.96 55.43 0.77 -26.19 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 21.86 26.95 -169.99 -4.58 17.28 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.23 5.58 56.52 0.32 -5.91 16 7 C -0.48 -13.46 9.09 -34.44 -0.31 -13.77 16 8 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.21 4.92 2.47 -70.02 -0.17 4.75 16 10 H 0.04 1.00 4.54 -51.93 -0.24 0.76 16 11 N -0.49 -10.66 6.73 -6.65 -0.04 -10.71 16 12 O -0.25 -5.58 11.22 -13.93 -0.16 -5.74 16 13 C 0.09 1.60 6.67 37.16 0.25 1.85 16 14 C -0.15 -2.17 6.05 -90.62 -0.55 -2.72 16 15 C -0.18 -2.20 10.18 -26.70 -0.27 -2.47 16 16 C -0.17 -2.01 10.25 -26.69 -0.27 -2.28 16 17 C -0.05 -1.01 4.64 -104.62 -0.49 -1.50 16 18 C -0.11 -2.03 8.98 -39.58 -0.36 -2.39 16 19 C -0.12 -2.03 10.05 -39.58 -0.40 -2.42 16 20 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 21 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 22 C -0.13 -2.51 9.67 -39.58 -0.38 -2.89 16 23 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.30 5.71 8.16 -39.29 -0.32 5.38 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.56 7.87 -51.93 -0.41 0.16 16 27 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.12 2.36 7.91 -52.49 -0.42 1.95 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.12 2.27 6.78 -52.49 -0.36 1.91 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -31.03 306.82 -8.41 -39.44 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.18 Total: 8.02 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.85 Total: -26.73 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.73 Total: -36.89 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.16 Total: -5.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.58 Total: 17.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.03 -8.41 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688522765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.918 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds