Wall clock time and date at job start Mon Mar 30 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48508 * 109.47046 * 265.82951 * 3 2 1 5 5 H 1.48499 * 109.47460 * 25.82918 * 3 2 1 6 6 H 1.48496 * 109.47373 * 145.82965 * 3 2 1 7 7 C 1.37884 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99580 * 354.21657 * 7 2 1 9 9 C 1.50696 * 119.99914 * 174.21476 * 7 2 1 10 10 H 1.08999 * 109.47335 * 354.85120 * 9 7 2 11 11 N 1.46903 * 109.46970 * 234.85067 * 9 7 2 12 12 O 1.46307 * 110.99737 * 89.99974 * 11 9 7 13 13 C 1.42894 * 113.99716 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47093 * 180.02562 * 13 12 11 15 15 C 1.52994 * 117.50108 * 116.25367 * 14 13 12 16 16 C 1.53001 * 117.49993 * 184.91476 * 14 13 12 17 17 C 1.50703 * 109.46936 * 114.85481 * 9 7 2 18 18 C 1.38234 * 119.99647 * 73.75958 * 17 9 7 19 19 C 1.38244 * 119.99579 * 179.80977 * 18 17 9 20 20 C 1.38239 * 119.99490 * 0.39318 * 19 18 17 21 21 C 1.38235 * 120.00572 * 359.85935 * 20 19 18 22 22 C 1.38230 * 119.99678 * 254.02747 * 17 9 7 23 23 H 0.96994 * 119.99817 * 0.02562 * 1 2 3 24 24 H 1.00897 * 111.00501 * 213.95789 * 11 9 7 25 25 H 1.09006 * 109.47529 * 60.00275 * 13 12 11 26 26 H 1.09000 * 109.47463 * 300.00145 * 13 12 11 27 27 H 1.08998 * 115.54809 * 330.58143 * 14 13 12 28 28 H 1.09000 * 117.50043 * 215.00553 * 15 14 13 29 29 H 1.09005 * 117.50129 * 0.02562 * 15 14 13 30 30 H 1.09002 * 117.49791 * 359.97218 * 16 14 13 31 31 H 1.09005 * 117.49769 * 144.99526 * 16 14 13 32 32 H 1.07997 * 120.00320 * 359.97438 * 18 17 9 33 33 H 1.07994 * 120.00170 * 180.22886 * 19 18 17 34 34 H 1.08003 * 119.99597 * 179.83624 * 20 19 18 35 35 H 1.07991 * 120.00082 * 179.97438 * 21 20 19 36 36 H 1.07993 * 120.00431 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5848 1.9954 -1.3964 5 1 1.4053 2.6765 0.6100 6 1 3.4998 1.4672 0.7863 7 6 2.0046 -1.1941 0.0005 8 1 1.4687 -2.1270 0.0952 9 6 3.5058 -1.1974 -0.1310 10 1 3.8574 -0.1807 -0.3065 11 7 3.8965 -2.0524 -1.2599 12 8 3.9648 -1.2821 -2.5019 13 6 4.3410 -2.0537 -3.6443 14 6 4.3805 -1.1508 -4.8789 15 6 5.7323 -0.9554 -5.5683 16 6 4.6520 -1.8141 -6.2307 17 6 4.1201 -1.7294 1.1382 18 6 4.0564 -3.0805 1.4232 19 6 4.6233 -3.5691 2.5856 20 6 5.2467 -2.7052 3.4666 21 6 5.3058 -1.3534 3.1840 22 6 4.7422 -0.8654 2.0198 23 1 -0.4849 0.8400 -0.0004 24 1 4.7721 -2.5182 -1.0747 25 1 3.6140 -2.8509 -3.7999 26 1 5.3271 -2.4881 -3.4807 27 1 3.6963 -0.3025 -4.8630 28 1 5.9375 0.0216 -6.0058 29 1 6.5935 -1.4703 -5.1425 30 1 4.8030 -2.8935 -6.2404 31 1 4.1465 -1.4019 -7.1041 32 1 3.5661 -3.7548 0.7367 33 1 4.5769 -4.6252 2.8066 34 1 5.6873 -3.0865 4.3759 35 1 5.7924 -0.6786 3.8724 36 1 4.7885 0.1906 1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688522765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:41 Heat of formation + Delta-G solvation = 32.283955 kcal Electronic energy + Delta-G solvation = -17469.953706 eV Core-core repulsion = 14727.955113 eV Total energy + Delta-G solvation = -2741.998593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.20392 -38.82994 -37.20379 -35.53162 -33.85057 -31.71895 -30.61430 -28.53423 -27.15994 -24.27172 -23.33816 -23.27031 -21.82964 -21.33992 -19.11070 -18.38210 -17.35747 -16.94826 -16.55516 -16.35624 -15.84324 -15.46797 -15.00963 -14.89270 -14.57847 -14.21220 -14.18086 -13.90816 -13.46967 -12.90589 -12.72973 -12.47360 -12.40175 -12.19092 -11.88459 -11.82539 -11.68319 -11.45916 -11.38220 -10.80614 -10.71221 -9.72401 -9.51151 -9.37418 -8.36337 -6.38169 0.55342 0.60306 1.24399 1.29473 1.35239 1.85156 2.26755 2.84585 2.94047 3.08809 3.79712 3.92509 4.00974 4.08093 4.13625 4.26573 4.27381 4.38088 4.49689 4.58536 4.65853 4.73864 4.77404 4.79222 4.86748 4.97200 5.16273 5.20012 5.22563 5.26312 5.42499 5.64093 5.68779 5.76124 5.92215 6.22961 6.34634 6.51511 6.73223 7.24993 8.79995 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.007620 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.403998 B = 3673.534829 C = 4731.269472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.480 4.480 8 H 0.038 0.962 9 C 0.214 3.786 10 H 0.027 0.973 11 N -0.493 5.493 12 O -0.282 6.282 13 C 0.091 3.909 14 C -0.182 4.182 15 C -0.168 4.168 16 C -0.152 4.152 17 C -0.078 4.078 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.146 4.146 23 H 0.268 0.732 24 H 0.320 0.680 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 -4.024 -2.136 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.107 3.893 10 H 0.045 0.955 11 N -0.165 5.165 12 O -0.289 6.289 13 C 0.014 3.986 14 C -0.202 4.202 15 C -0.205 4.205 16 C -0.189 4.189 17 C -0.080 4.080 18 C -0.139 4.139 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.136 4.136 22 C -0.164 4.164 23 H 0.077 0.923 24 H 0.136 0.864 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.142 -3.917 -2.286 14.852 hybrid contribution 0.305 1.216 -0.059 1.256 sum 14.448 -2.701 -2.344 14.884 Atomic orbital electron populations 1.70021 1.07894 1.28115 1.51580 1.25841 0.95520 1.02564 0.93859 0.85967 0.79746 0.79485 0.78949 1.20347 1.20521 1.16608 1.20811 0.89770 0.93244 1.48097 0.94391 1.18595 0.94393 0.92153 0.84199 0.95478 1.67329 1.31972 1.22935 0.94267 1.90797 1.91975 1.32521 1.13585 1.21980 0.98710 0.93839 0.84067 1.22103 1.02262 1.02769 0.93070 1.23179 0.91904 1.02306 1.03111 1.23083 1.01831 1.00057 0.93903 1.20222 0.95646 0.94857 0.97257 1.21054 0.99803 0.94511 0.98553 1.21442 0.97653 1.01074 0.93546 1.21447 1.00038 0.93042 1.00283 1.21362 0.99444 0.96730 0.96102 1.21200 0.99890 0.99149 0.96198 0.92308 0.86401 0.93334 0.92202 0.89225 0.87794 0.87793 0.87344 0.87172 0.86825 0.83579 0.82833 0.83615 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.96 21.45 0.30 -59.71 16 2 C 0.02 1.28 5.47 84.66 0.46 1.74 16 3 Si 0.93 46.48 26.95 68.60 1.85 48.32 16 4 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.24 -10.98 5.58 99.48 0.56 -10.42 16 7 C -0.48 -28.62 9.09 25.60 0.23 -28.39 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 9 C 0.21 10.58 2.47 43.42 0.11 10.69 16 10 H 0.03 1.40 4.54 -2.39 -0.01 1.39 16 11 N -0.49 -22.22 6.73 -174.95 -1.18 -23.40 16 12 O -0.28 -12.80 11.22 -50.18 -0.56 -13.37 16 13 C 0.09 3.13 6.67 71.98 0.48 3.61 16 14 C -0.18 -5.38 6.05 -10.79 -0.07 -5.45 16 15 C -0.17 -3.69 10.18 30.62 0.31 -3.37 16 16 C -0.15 -3.19 10.25 30.62 0.31 -2.87 16 17 C -0.08 -3.32 4.64 -19.87 -0.09 -3.41 16 18 C -0.12 -4.54 8.98 22.27 0.20 -4.34 16 19 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 20 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 21 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 22 C -0.15 -5.52 9.67 22.27 0.22 -5.30 16 23 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.32 12.30 8.16 -89.70 -0.73 11.57 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.06 1.74 7.87 -2.39 -0.02 1.73 16 27 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.10 2.05 8.03 -2.38 -0.02 2.03 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.11 4.41 7.91 -2.91 -0.02 4.38 16 33 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.15 3.30 8.06 -2.92 -0.02 3.28 16 36 H 0.11 4.14 6.78 -2.91 -0.02 4.12 16 Total: -1.00 -71.79 306.82 3.43 -68.36 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.18 Total: 26.65 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 2.84 Total: -46.86 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -0.88 Total: -83.10 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.56 Total: -13.37 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.85 Total: 48.32 kcal Total: -71.79 3.43 -68.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688522765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.649 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds