Wall clock time and date at job start Mon Mar 30 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47443 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47691 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.47181 * 60.00424 * 3 2 1 7 7 C 1.37878 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47214 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47232 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46693 * 180.02562 * 11 10 9 13 13 C 1.39672 * 119.99663 * 180.02562 * 12 11 10 14 14 C 1.39084 * 120.08779 * 0.02562 * 13 12 11 15 15 C 1.38113 * 119.68256 * 179.97438 * 14 13 12 16 16 C 1.38022 * 120.43040 * 0.18333 * 15 14 13 17 17 C 1.39319 * 120.39792 * 0.03710 * 16 15 14 18 18 C 1.38354 * 120.08830 * 179.97438 * 13 12 11 19 19 C 1.51933 * 132.11263 * 358.87487 * 18 13 12 20 20 C 1.54707 * 101.77920 * 195.82456 * 19 18 13 21 21 O 1.36152 * 129.85396 * 179.52154 * 17 16 15 22 22 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46779 * 60.00247 * 9 7 2 24 24 H 1.08999 * 109.47474 * 300.00701 * 9 7 2 25 25 H 1.09000 * 109.46367 * 60.00083 * 10 9 7 26 26 H 1.08998 * 109.47154 * 300.00448 * 10 9 7 27 27 H 1.08997 * 109.46903 * 60.00640 * 11 10 9 28 28 H 1.08995 * 109.46887 * 300.00322 * 11 10 9 29 29 H 0.96994 * 120.00576 * 0.02562 * 12 11 10 30 30 H 1.08005 * 120.15809 * 359.94563 * 14 13 12 31 31 H 1.07990 * 119.78647 * 180.21412 * 15 14 13 32 32 H 1.08000 * 119.80034 * 180.02562 * 16 15 14 33 33 H 1.09000 * 110.89618 * 77.76085 * 19 18 13 34 34 H 1.09002 * 111.10637 * 313.98156 * 19 18 13 35 35 H 1.09002 * 110.75211 * 216.53535 * 20 19 18 36 36 H 1.09002 * 110.74833 * 93.36191 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 7 2.4325 -6.1005 -0.0031 13 6 1.9669 -7.4174 -0.0043 14 6 0.5999 -7.6737 -0.0054 15 6 0.1488 -8.9790 -0.0071 16 6 1.0453 -10.0285 -0.0039 17 6 2.4168 -9.7840 0.0019 18 6 2.8644 -8.4703 -0.0054 19 6 4.3829 -8.5147 -0.0278 20 6 4.6500 -9.9852 -0.4275 21 8 3.4592 -10.6598 0.0145 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6046 0.8877 26 1 2.8713 -3.6039 -0.8922 27 1 0.8534 -5.0442 -0.8923 28 1 0.8541 -5.0454 0.8877 29 1 3.3861 -5.9233 -0.0027 30 1 -0.1055 -6.8558 -0.0045 31 1 -0.9122 -9.1799 -0.0115 32 1 0.6813 -11.0453 -0.0057 33 1 4.7928 -8.2986 0.9588 34 1 4.7847 -7.8290 -0.7738 35 1 5.5274 -10.3729 0.0902 36 1 4.7689 -10.0764 -1.5072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690227387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:44 Heat of formation + Delta-G solvation = -23.180380 kcal Electronic energy + Delta-G solvation = -16944.816279 eV Core-core repulsion = 14200.412572 eV Total energy + Delta-G solvation = -2744.403707 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00993 -38.06774 -35.69687 -33.65922 -32.40976 -31.16788 -29.44213 -28.34724 -26.17238 -23.54445 -23.28331 -21.70797 -21.01347 -20.25952 -17.53890 -16.96168 -16.33528 -16.22288 -15.61185 -14.99408 -14.81972 -14.55693 -14.29617 -13.39620 -13.16609 -13.05983 -12.76719 -12.38726 -11.98646 -11.85958 -11.77220 -11.45594 -11.09357 -11.04231 -10.84962 -10.70357 -10.56798 -10.02273 -9.63763 -9.51620 -9.15711 -8.41542 -8.15679 -7.25305 -6.06209 -4.09074 1.44191 1.71494 3.26572 3.27243 3.34942 3.38473 3.64490 3.89102 4.41304 4.44427 4.59365 4.87467 5.10958 5.18228 5.28384 5.29975 5.46164 5.54286 5.62500 5.63871 5.69701 5.73243 5.94194 6.07561 6.28741 6.41711 6.54359 6.56252 6.61593 6.67857 6.93355 7.19281 7.51216 7.58311 7.70564 7.90625 7.92593 8.34237 8.97623 9.55508 11.05146 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043820 B = 0.003676 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.831424 B = 7614.449036 C = 8210.524705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.739 5.739 13 C 0.273 3.727 14 C -0.225 4.225 15 C -0.038 4.038 16 C -0.205 4.205 17 C 0.147 3.853 18 C -0.266 4.266 19 C -0.097 4.097 20 C 0.054 3.946 21 O -0.309 6.309 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.397 0.603 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -18.611 -0.672 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.365 5.365 13 C 0.166 3.834 14 C -0.247 4.247 15 C -0.057 4.057 16 C -0.226 4.226 17 C 0.101 3.899 18 C -0.272 4.272 19 C -0.135 4.135 20 C -0.021 4.021 21 O -0.223 6.223 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.231 0.769 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.282 -18.544 -0.616 19.291 hybrid contribution 0.882 1.236 -0.030 1.518 sum 6.164 -17.308 -0.646 18.384 Atomic orbital electron populations 1.69966 1.06060 1.26619 1.50674 1.25024 0.94863 0.99325 0.95220 0.86528 0.80069 0.83712 0.77639 1.19761 1.20963 1.20955 1.21240 0.93047 0.90949 1.50826 0.92632 1.19032 0.93832 0.90933 0.97546 1.21853 0.99790 0.93325 1.00866 1.21651 0.92177 0.85707 1.00852 1.45058 1.09057 1.02282 1.80121 1.17095 0.91837 0.83702 0.90784 1.20660 0.93202 0.97520 1.13363 1.20579 0.98880 0.91342 0.94913 1.19921 0.88668 0.99735 1.14292 1.19253 0.89065 0.87320 0.94250 1.20092 0.94713 0.92944 1.19427 1.21603 0.92260 0.96915 1.02674 1.23764 0.87049 0.91152 1.00149 1.86807 1.16834 1.36451 1.82217 0.92960 0.96318 0.96305 0.92803 0.92820 0.92361 0.92361 0.76882 0.85311 0.85425 0.86240 0.89994 0.89850 0.88024 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 1.97 4.92 -4.04 -0.02 1.95 16 12 N -0.74 -10.80 5.73 -58.74 -0.34 -11.14 16 13 C 0.27 3.98 6.64 -83.93 -0.56 3.42 16 14 C -0.22 -3.14 9.33 -39.31 -0.37 -3.51 16 15 C -0.04 -0.47 10.01 -39.71 -0.40 -0.87 16 16 C -0.21 -2.64 10.06 -39.26 -0.39 -3.03 16 17 C 0.15 2.03 7.03 -38.98 -0.27 1.76 16 18 C -0.27 -3.62 6.20 -103.77 -0.64 -4.27 16 19 C -0.10 -1.02 6.77 -26.38 -0.18 -1.20 16 20 C 0.05 0.51 8.00 38.06 0.30 0.81 16 21 O -0.31 -4.01 11.11 -20.22 -0.22 -4.23 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 28 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 29 H 0.40 5.30 8.16 -40.82 -0.33 4.96 16 30 H 0.13 1.75 6.75 -52.48 -0.35 1.40 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -30.55 302.87 -8.78 -39.34 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.28 Total: 1.13 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -3.22 Total: -20.24 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.40 Total: -36.88 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.22 Total: -4.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.55 -8.78 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690227387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.156 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds