Wall clock time and date at job start Mon Mar 30 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47443 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47691 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.47181 * 60.00424 * 3 2 1 7 7 C 1.37878 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47214 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47232 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46693 * 180.02562 * 11 10 9 13 13 C 1.39672 * 119.99663 * 180.02562 * 12 11 10 14 14 C 1.39084 * 120.08779 * 0.02562 * 13 12 11 15 15 C 1.38113 * 119.68256 * 179.97438 * 14 13 12 16 16 C 1.38022 * 120.43040 * 0.18333 * 15 14 13 17 17 C 1.39319 * 120.39792 * 0.03710 * 16 15 14 18 18 C 1.38354 * 120.08830 * 179.97438 * 13 12 11 19 19 C 1.51933 * 132.11263 * 358.87487 * 18 13 12 20 20 C 1.54707 * 101.77920 * 195.82456 * 19 18 13 21 21 O 1.36152 * 129.85396 * 179.52154 * 17 16 15 22 22 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46779 * 60.00247 * 9 7 2 24 24 H 1.08999 * 109.47474 * 300.00701 * 9 7 2 25 25 H 1.09000 * 109.46367 * 60.00083 * 10 9 7 26 26 H 1.08998 * 109.47154 * 300.00448 * 10 9 7 27 27 H 1.08997 * 109.46903 * 60.00640 * 11 10 9 28 28 H 1.08995 * 109.46887 * 300.00322 * 11 10 9 29 29 H 0.96994 * 120.00576 * 0.02562 * 12 11 10 30 30 H 1.08005 * 120.15809 * 359.94563 * 14 13 12 31 31 H 1.07990 * 119.78647 * 180.21412 * 15 14 13 32 32 H 1.08000 * 119.80034 * 180.02562 * 16 15 14 33 33 H 1.09000 * 110.89618 * 77.76085 * 19 18 13 34 34 H 1.09002 * 111.10637 * 313.98156 * 19 18 13 35 35 H 1.09002 * 110.75211 * 216.53535 * 20 19 18 36 36 H 1.09002 * 110.74833 * 93.36191 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 7 2.4325 -6.1005 -0.0031 13 6 1.9669 -7.4174 -0.0043 14 6 0.5999 -7.6737 -0.0054 15 6 0.1488 -8.9790 -0.0071 16 6 1.0453 -10.0285 -0.0039 17 6 2.4168 -9.7840 0.0019 18 6 2.8644 -8.4703 -0.0054 19 6 4.3829 -8.5147 -0.0278 20 6 4.6500 -9.9852 -0.4275 21 8 3.4592 -10.6598 0.0145 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6046 0.8877 26 1 2.8713 -3.6039 -0.8922 27 1 0.8534 -5.0442 -0.8923 28 1 0.8541 -5.0454 0.8877 29 1 3.3861 -5.9233 -0.0027 30 1 -0.1055 -6.8558 -0.0045 31 1 -0.9122 -9.1799 -0.0115 32 1 0.6813 -11.0453 -0.0057 33 1 4.7928 -8.2986 0.9588 34 1 4.7847 -7.8290 -0.7738 35 1 5.5274 -10.3729 0.0902 36 1 4.7689 -10.0764 -1.5072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690227387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:44 Heat of formation + Delta-G solvation = -41.109643 kcal Electronic energy + Delta-G solvation = -16945.593751 eV Core-core repulsion = 14200.412572 eV Total energy + Delta-G solvation = -2745.181179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94549 -39.12985 -37.00761 -35.39119 -33.73415 -32.60235 -30.38665 -29.65810 -27.75845 -25.09306 -24.21584 -23.00434 -22.06372 -21.77246 -18.57225 -18.55991 -17.76452 -17.12087 -16.71626 -16.47326 -16.29103 -15.99340 -15.53184 -14.37478 -14.34602 -14.27868 -14.03289 -13.76358 -13.65330 -13.33569 -12.81172 -12.74222 -12.57332 -12.39619 -12.22606 -12.02189 -11.95943 -11.60495 -11.46348 -11.17913 -10.82560 -10.56955 -9.13341 -8.35429 -8.21377 -6.32272 0.44009 0.67313 1.40190 1.40739 1.53523 2.37467 2.40362 2.50095 2.88283 3.12552 3.61084 3.76988 4.10290 4.17424 4.21702 4.22757 4.28004 4.49466 4.53511 4.57980 4.63973 4.83502 4.90967 4.93369 4.95670 5.10304 5.14185 5.30289 5.43290 5.49254 5.59912 5.66687 5.70265 5.82832 6.14999 6.23607 6.40624 6.81652 6.85490 7.37265 8.90679 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043820 B = 0.003676 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.831424 B = 7614.449036 C = 8210.524705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.104 4.104 11 C 0.136 3.864 12 N -0.737 5.737 13 C 0.253 3.747 14 C -0.242 4.242 15 C -0.037 4.037 16 C -0.211 4.211 17 C 0.131 3.869 18 C -0.275 4.275 19 C -0.097 4.097 20 C 0.051 3.949 21 O -0.323 6.323 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.004 1.004 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.403 0.597 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -19.264 -0.768 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.142 4.142 11 C 0.012 3.988 12 N -0.366 5.366 13 C 0.148 3.852 14 C -0.265 4.265 15 C -0.055 4.055 16 C -0.231 4.231 17 C 0.085 3.915 18 C -0.281 4.281 19 C -0.134 4.134 20 C -0.023 4.023 21 O -0.237 6.237 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.239 0.761 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.154 0.846 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.147 0.853 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.789 -19.228 -0.714 20.404 hybrid contribution 0.401 1.345 -0.003 1.404 sum 7.190 -17.882 -0.717 19.287 Atomic orbital electron populations 1.70093 1.07766 1.27750 1.51635 1.25966 0.95761 1.03349 0.94741 0.85406 0.79096 0.78836 0.77748 1.18562 1.20433 1.20446 1.21702 0.93590 0.92289 1.50541 0.92087 1.18927 0.94331 0.92622 0.95293 1.21567 0.98565 0.92715 1.01315 1.21268 0.91947 0.85088 1.00507 1.44789 1.08908 1.01866 1.80999 1.17269 0.92393 0.83668 0.91894 1.20846 0.93239 0.98332 1.14102 1.20878 1.00310 0.90524 0.93817 1.20257 0.88657 1.00746 1.13448 1.19541 0.89760 0.87664 0.94507 1.20413 0.96451 0.92620 1.18578 1.21703 0.90211 0.98020 1.03492 1.24050 0.86680 0.90245 1.01354 1.86786 1.17567 1.36990 1.82394 0.92743 0.98567 0.98598 0.92316 0.92250 0.92763 0.92857 0.76144 0.85639 0.82779 0.84554 0.89368 0.88694 0.85261 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 11 C 0.14 4.50 4.92 86.38 0.42 4.92 16 12 N -0.74 -21.08 5.73 -339.75 -1.95 -23.03 16 13 C 0.25 7.23 6.64 38.12 0.25 7.48 16 14 C -0.24 -6.69 9.33 22.44 0.21 -6.48 16 15 C -0.04 -0.86 10.01 22.19 0.22 -0.64 16 16 C -0.21 -5.11 10.06 22.48 0.23 -4.88 16 17 C 0.13 3.46 7.03 22.66 0.16 3.62 16 18 C -0.27 -7.17 6.20 -19.31 -0.12 -7.29 16 19 C -0.10 -1.84 6.77 30.82 0.21 -1.63 16 20 C 0.05 0.84 8.00 72.56 0.58 1.42 16 21 O -0.32 -7.81 11.11 -95.28 -1.06 -8.87 16 22 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 23 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 24 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.83 7.95 -2.39 -0.02 1.81 16 28 H 0.05 1.81 7.95 -2.39 -0.02 1.79 16 29 H 0.40 10.30 8.16 -92.71 -0.76 9.55 16 30 H 0.13 3.45 6.75 -2.91 -0.02 3.43 16 31 H 0.15 2.66 8.06 -2.92 -0.02 2.64 16 32 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.28 302.87 2.79 -62.50 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.31 Total: 15.01 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 3.17 Total: -35.49 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -1.66 Total: -78.79 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.06 Total: -8.87 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.28 2.79 -62.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690227387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.388 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds