Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00232 * 2 1 4 4 H 1.48504 * 109.47503 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47234 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.47007 * 59.99622 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47641 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.35902 * 116.99862 * 180.02562 * 11 10 9 13 13 C 1.38749 * 120.09012 * 359.97438 * 12 11 10 14 14 C 1.38005 * 119.87584 * 179.97438 * 13 12 11 15 15 C 1.38539 * 120.29218 * 0.02562 * 14 13 12 16 16 C 1.38263 * 119.93808 * 359.97438 * 15 14 13 17 17 C 1.38410 * 119.90407 * 0.02562 * 16 15 14 18 18 C 1.51384 * 109.75598 * 180.02562 * 16 15 14 19 19 H 1.08994 * 110.29963 * 258.26165 * 18 16 15 20 20 N 1.46897 * 110.30331 * 136.11035 * 18 16 15 21 21 C 1.54337 * 105.17230 * 17.18782 * 18 16 15 22 22 C 1.51390 * 130.32111 * 179.97438 * 15 14 13 23 23 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47075 * 59.99665 * 9 7 2 25 25 H 1.08997 * 109.47067 * 300.00444 * 9 7 2 26 26 H 1.09001 * 109.46837 * 59.99535 * 10 9 7 27 27 H 1.09006 * 109.46917 * 299.99936 * 10 9 7 28 28 H 1.08000 * 120.06606 * 359.96569 * 13 12 11 29 29 H 1.08006 * 119.85592 * 179.72754 * 14 13 12 30 30 H 1.07999 * 119.91482 * 179.97438 * 17 16 15 31 31 H 1.00908 * 110.99798 * 61.45102 * 20 18 16 32 32 H 1.00900 * 110.99928 * 185.40552 * 20 18 16 33 33 H 1.09001 * 110.82588 * 91.86302 * 21 18 16 34 34 H 1.09006 * 110.82352 * 215.41515 * 21 18 16 35 35 H 1.09000 * 110.30452 * 43.88318 * 22 15 14 36 36 H 1.08998 * 110.30741 * 281.72310 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 8 1.5307 -4.8997 -0.0032 12 6 2.2709 -6.0394 -0.0026 13 6 3.6566 -5.9690 -0.0011 14 6 4.4039 -7.1292 0.0000 15 6 3.7766 -8.3645 -0.0010 16 6 2.3959 -8.4372 -0.0026 17 6 1.6437 -7.2753 -0.0037 18 6 1.9598 -9.8869 -0.0028 19 1 1.6529 -10.1893 -1.0040 20 7 0.8611 -10.0888 0.9510 21 6 3.2057 -10.6835 0.4389 22 6 4.3622 -9.7605 -0.0007 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8879 26 1 2.8713 -3.6047 0.8890 27 1 2.8726 -3.6040 -0.8910 28 1 4.1495 -5.0081 -0.0008 29 1 5.4825 -7.0740 -0.0032 30 1 0.5652 -7.3320 -0.0053 31 1 0.0557 -9.5366 0.6971 32 1 0.6210 -11.0661 1.0244 33 1 3.2122 -10.8249 1.5197 34 1 3.2567 -11.6415 -0.0786 35 1 5.1872 -9.8245 0.7088 36 1 4.7012 -10.0287 -1.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690732580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = -29.216555 kcal Electronic energy + Delta-G solvation = -17032.295789 eV Core-core repulsion = 14287.630333 eV Total energy + Delta-G solvation = -2744.665456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29114 -38.38990 -35.32177 -33.40528 -32.66621 -30.70040 -29.96565 -27.97089 -25.87460 -24.67471 -22.78189 -21.36843 -20.69152 -19.86364 -17.51214 -16.23720 -16.05059 -15.89293 -15.42013 -15.24563 -14.97232 -14.48165 -14.24018 -13.68749 -13.18858 -12.72087 -12.55241 -12.34843 -11.97765 -11.64871 -11.59131 -11.45529 -11.07127 -11.04132 -10.71547 -10.66448 -10.37435 -9.79434 -9.65062 -9.28089 -9.03213 -8.57478 -8.44549 -7.68313 -6.10135 -4.14672 1.50317 1.66727 3.26843 3.33850 3.37562 3.77204 3.91117 4.37767 4.40466 4.41738 4.58301 4.93393 5.06194 5.14244 5.26418 5.30238 5.40753 5.51631 5.58288 5.67629 5.80504 5.86821 6.00054 6.04908 6.08652 6.28870 6.48059 6.58315 6.74660 6.76512 6.89848 7.00742 7.24764 7.51735 7.64755 7.82288 8.07952 8.24475 8.91143 9.49702 11.01528 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051019 B = 0.003838 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.686996 B = 7293.198753 C = 7773.412965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.146 3.854 13 C -0.208 4.208 14 C -0.067 4.067 15 C -0.148 4.148 16 C -0.054 4.054 17 C -0.141 4.141 18 C 0.131 3.869 19 H 0.051 0.949 20 N -0.841 5.841 21 C -0.115 4.115 22 C -0.071 4.071 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.345 0.655 32 H 0.340 0.660 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 -20.432 -0.635 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.229 6.229 12 C 0.099 3.901 13 C -0.227 4.227 14 C -0.085 4.085 15 C -0.149 4.149 16 C -0.055 4.055 17 C -0.160 4.160 18 C 0.020 3.980 19 H 0.068 0.932 20 N -0.371 5.371 21 C -0.153 4.153 22 C -0.109 4.109 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.441 -19.972 -0.096 20.985 hybrid contribution 0.076 0.804 -0.833 1.160 sum 6.517 -19.168 -0.929 20.267 Atomic orbital electron populations 1.69985 1.06110 1.26855 1.49812 1.24991 0.94905 0.99400 0.94916 0.86431 0.79988 0.83245 0.77716 1.19630 1.20839 1.20827 1.21015 0.93094 0.90208 1.52094 0.92301 1.19130 0.94190 0.89034 0.98873 1.23331 0.97080 0.80797 0.99657 1.86163 1.36500 1.13140 1.87057 1.18977 0.90035 0.87336 0.93752 1.21269 0.93165 0.99490 1.08797 1.20326 0.99276 0.90641 0.98275 1.20257 0.94109 0.94476 1.06027 1.20033 0.93808 0.93333 0.98290 1.19690 0.99925 0.88844 1.07515 1.20817 0.92197 0.91333 0.93679 0.93171 1.58778 1.11847 1.13246 1.53233 1.22396 0.93095 0.97395 1.02366 1.20876 0.97782 0.90802 1.01429 0.92762 0.95410 0.95375 0.93104 0.93154 0.84997 0.86325 0.85896 0.84204 0.84705 0.89861 0.91035 0.90969 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.43 4.68 37.16 0.17 1.61 16 11 O -0.32 -6.69 10.14 -19.43 -0.20 -6.89 16 12 C 0.15 2.66 6.68 -39.26 -0.26 2.40 16 13 C -0.21 -3.41 9.04 -39.48 -0.36 -3.77 16 14 C -0.07 -0.94 10.03 -39.56 -0.40 -1.34 16 15 C -0.15 -1.97 6.14 -104.16 -0.64 -2.61 16 16 C -0.05 -0.75 5.78 -104.21 -0.60 -1.36 16 17 C -0.14 -2.27 9.81 -39.39 -0.39 -2.66 16 18 C 0.13 1.38 3.99 -67.83 -0.27 1.11 16 19 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 20 N -0.84 -8.18 9.24 -4.77 -0.04 -8.22 16 21 C -0.11 -1.03 6.75 -25.32 -0.17 -1.20 16 22 C -0.07 -0.70 6.77 -26.83 -0.18 -0.88 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 27 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 28 H 0.13 2.10 6.31 -52.49 -0.33 1.77 16 29 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.12 1.86 7.94 -52.49 -0.42 1.44 16 31 H 0.34 3.23 8.81 -39.29 -0.35 2.88 16 32 H 0.34 2.44 9.04 -39.29 -0.36 2.09 16 33 H 0.08 0.79 8.09 -51.93 -0.42 0.36 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -31.06 301.59 -8.80 -39.86 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.17 Total: 1.90 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -3.65 Total: -21.67 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.69 Total: -34.10 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.06 -8.80 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690732580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.647 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds