Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00232 * 2 1 4 4 H 1.48504 * 109.47503 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47234 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.47007 * 59.99622 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47641 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.35902 * 116.99862 * 180.02562 * 11 10 9 13 13 C 1.38749 * 120.09012 * 359.97438 * 12 11 10 14 14 C 1.38005 * 119.87584 * 179.97438 * 13 12 11 15 15 C 1.38539 * 120.29218 * 0.02562 * 14 13 12 16 16 C 1.38263 * 119.93808 * 359.97438 * 15 14 13 17 17 C 1.38410 * 119.90407 * 0.02562 * 16 15 14 18 18 C 1.51384 * 109.75598 * 180.02562 * 16 15 14 19 19 H 1.08994 * 110.29963 * 258.26165 * 18 16 15 20 20 N 1.46897 * 110.30331 * 136.11035 * 18 16 15 21 21 C 1.54337 * 105.17230 * 17.18782 * 18 16 15 22 22 C 1.51390 * 130.32111 * 179.97438 * 15 14 13 23 23 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47075 * 59.99665 * 9 7 2 25 25 H 1.08997 * 109.47067 * 300.00444 * 9 7 2 26 26 H 1.09001 * 109.46837 * 59.99535 * 10 9 7 27 27 H 1.09006 * 109.46917 * 299.99936 * 10 9 7 28 28 H 1.08000 * 120.06606 * 359.96569 * 13 12 11 29 29 H 1.08006 * 119.85592 * 179.72754 * 14 13 12 30 30 H 1.07999 * 119.91482 * 179.97438 * 17 16 15 31 31 H 1.00908 * 110.99798 * 61.45102 * 20 18 16 32 32 H 1.00900 * 110.99928 * 185.40552 * 20 18 16 33 33 H 1.09001 * 110.82588 * 91.86302 * 21 18 16 34 34 H 1.09006 * 110.82352 * 215.41515 * 21 18 16 35 35 H 1.09000 * 110.30452 * 43.88318 * 22 15 14 36 36 H 1.08998 * 110.30741 * 281.72310 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 8 1.5307 -4.8997 -0.0032 12 6 2.2709 -6.0394 -0.0026 13 6 3.6566 -5.9690 -0.0011 14 6 4.4039 -7.1292 0.0000 15 6 3.7766 -8.3645 -0.0010 16 6 2.3959 -8.4372 -0.0026 17 6 1.6437 -7.2753 -0.0037 18 6 1.9598 -9.8869 -0.0028 19 1 1.6529 -10.1893 -1.0040 20 7 0.8611 -10.0888 0.9510 21 6 3.2057 -10.6835 0.4389 22 6 4.3622 -9.7605 -0.0007 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8879 26 1 2.8713 -3.6047 0.8890 27 1 2.8726 -3.6040 -0.8910 28 1 4.1495 -5.0081 -0.0008 29 1 5.4825 -7.0740 -0.0032 30 1 0.5652 -7.3320 -0.0053 31 1 0.0557 -9.5366 0.6971 32 1 0.6210 -11.0661 1.0244 33 1 3.2122 -10.8249 1.5197 34 1 3.2567 -11.6415 -0.0786 35 1 5.1872 -9.8245 0.7088 36 1 4.7012 -10.0287 -1.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690732580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = -49.263545 kcal Electronic energy + Delta-G solvation = -17033.165092 eV Core-core repulsion = 14287.630333 eV Total energy + Delta-G solvation = -2745.534758 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44746 -39.71781 -36.46007 -35.41879 -33.66970 -32.31771 -31.39968 -29.09212 -27.26031 -26.20466 -23.99724 -23.05780 -21.68955 -21.13434 -19.06116 -18.08068 -17.14359 -17.02003 -16.75045 -16.61911 -16.26204 -16.06492 -15.37760 -14.45314 -14.38977 -14.30945 -14.26546 -14.02494 -13.19067 -13.03532 -12.83065 -12.66988 -12.49095 -12.40341 -12.28234 -11.94327 -11.71619 -11.53598 -11.39282 -11.36588 -10.64020 -9.97576 -9.55235 -8.93711 -8.27985 -6.41922 0.33962 0.46687 1.40445 1.41589 1.55163 2.23809 2.47854 2.73879 3.06490 3.56357 3.57808 3.68557 3.92865 4.08431 4.23464 4.24477 4.26595 4.35738 4.45103 4.51716 4.68627 4.71045 4.83787 4.99806 5.00157 5.22692 5.30192 5.31702 5.36960 5.44514 5.45823 5.65345 5.66412 5.85641 6.05932 6.20566 6.54603 6.60159 6.72892 7.28385 8.85499 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051019 B = 0.003838 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.686996 B = 7293.198753 C = 7773.412965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.341 6.341 12 C 0.105 3.895 13 C -0.219 4.219 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.062 4.062 17 C -0.153 4.153 18 C 0.130 3.870 19 H 0.063 0.937 20 N -0.850 5.850 21 C -0.108 4.108 22 C -0.070 4.070 23 H 0.267 0.733 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.148 0.852 30 H 0.121 0.879 31 H 0.344 0.656 32 H 0.356 0.644 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -22.121 -0.745 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.010 3.990 11 O -0.256 6.256 12 C 0.060 3.940 13 C -0.238 4.238 14 C -0.088 4.088 15 C -0.145 4.145 16 C -0.063 4.063 17 C -0.172 4.172 18 C 0.019 3.981 19 H 0.080 0.920 20 N -0.382 5.382 21 C -0.145 4.145 22 C -0.107 4.107 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.171 0.829 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.816 -21.705 -0.203 23.427 hybrid contribution -0.683 1.156 -0.797 1.562 sum 8.132 -20.548 -1.000 22.122 Atomic orbital electron populations 1.70127 1.08082 1.28207 1.50620 1.26056 0.95839 1.03740 0.94087 0.85213 0.79026 0.77746 0.77914 1.18112 1.20150 1.20194 1.21428 0.93843 0.90985 1.52159 0.91100 1.18969 0.94540 0.91398 0.95980 1.22868 0.95437 0.80197 1.00450 1.86070 1.37421 1.13704 1.88394 1.19298 0.91056 0.86716 0.96933 1.21379 0.92484 1.00622 1.09265 1.20663 1.00690 0.90116 0.97292 1.20850 0.94147 0.96121 1.03390 1.20530 0.94375 0.94396 0.97006 1.19859 1.00256 0.89129 1.07953 1.20929 0.93353 0.89202 0.94645 0.91967 1.58756 1.11844 1.14502 1.53088 1.22425 0.91391 0.98230 1.02472 1.21011 0.98390 0.88190 1.03122 0.92406 0.98310 0.98386 0.92297 0.92176 0.85112 0.83383 0.86103 0.84278 0.82947 0.90283 0.88029 0.89400 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.98 43.92 29.54 68.60 2.03 45.94 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.59 5.34 29.85 0.16 1.75 16 10 C 0.08 3.87 4.68 71.98 0.34 4.21 16 11 O -0.34 -15.32 10.14 -92.45 -0.94 -16.25 16 12 C 0.11 3.97 6.68 22.48 0.15 4.12 16 13 C -0.22 -7.17 9.04 22.34 0.20 -6.97 16 14 C -0.07 -1.83 10.03 22.29 0.22 -1.61 16 15 C -0.14 -3.50 6.14 -19.57 -0.12 -3.62 16 16 C -0.06 -1.66 5.78 -19.60 -0.11 -1.78 16 17 C -0.15 -5.05 9.81 22.40 0.22 -4.83 16 18 C 0.13 2.42 3.99 44.84 0.18 2.60 16 19 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 20 N -0.85 -15.06 9.24 -169.00 -1.56 -16.62 16 21 C -0.11 -1.50 6.75 31.51 0.21 -1.29 16 22 C -0.07 -1.09 6.77 30.53 0.21 -0.88 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 27 H 0.06 2.57 7.66 -2.38 -0.02 2.56 16 28 H 0.13 4.18 6.31 -2.91 -0.02 4.16 16 29 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.12 3.85 7.94 -2.91 -0.02 3.83 16 31 H 0.34 6.19 8.81 -89.69 -0.79 5.40 16 32 H 0.36 4.30 9.04 -89.69 -0.81 3.48 16 33 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.18 301.59 1.65 -67.52 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.51 Total: 15.31 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 2.35 Total: -38.89 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.28 Total: -73.63 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.94 Total: -16.25 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.18 1.65 -67.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690732580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.260 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds