Wall clock time and date at job start Mon Mar 30 2020 06:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00564 * 2 1 4 4 H 1.48499 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46711 * 299.99753 * 3 2 1 6 6 H 1.48493 * 109.47186 * 59.99438 * 3 2 1 7 7 C 1.39872 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99980 * 163.05734 * 7 2 1 9 9 C 1.41135 * 119.99817 * 343.04723 * 7 2 1 10 10 C 1.40889 * 120.15700 * 334.54291 * 9 7 2 11 11 C 1.36343 * 119.83518 * 180.27277 * 10 9 7 12 12 C 1.39570 * 120.15913 * 359.49263 * 11 10 9 13 13 N 1.38853 * 119.83989 * 180.25905 * 12 11 10 14 14 C 1.46498 * 120.00232 * 0.24862 * 13 12 11 15 15 C 1.52997 * 109.47205 * 180.02562 * 14 13 12 16 16 O 1.42897 * 112.85256 * 53.80145 * 15 14 13 17 17 C 1.53783 * 113.61233 * 282.49489 * 15 14 13 18 18 C 1.53784 * 87.08184 * 220.02191 * 17 15 14 19 19 C 1.53784 * 113.61287 * 184.99824 * 15 14 13 20 20 C 1.39569 * 120.31288 * 0.50366 * 12 11 10 21 21 C 1.36330 * 120.16428 * 359.75718 * 20 12 11 22 22 H 0.97009 * 119.99636 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.08289 * 359.97438 * 10 9 7 24 24 H 1.07994 * 119.91551 * 179.74763 * 11 10 9 25 25 H 0.97001 * 120.00216 * 180.24713 * 13 12 11 26 26 H 1.09004 * 109.46919 * 299.99841 * 14 13 12 27 27 H 1.08998 * 109.47335 * 59.99969 * 14 13 12 28 28 H 0.96698 * 113.99670 * 309.66220 * 16 15 14 29 29 H 1.09006 * 113.61409 * 334.56884 * 17 15 14 30 30 H 1.08996 * 113.62019 * 105.47021 * 17 15 14 31 31 H 1.08997 * 113.61199 * 270.88096 * 18 17 15 32 32 H 1.09002 * 113.61702 * 139.98185 * 18 17 15 33 33 H 1.08997 * 113.61553 * 254.52502 * 19 15 14 34 34 H 1.09003 * 113.61705 * 25.43018 * 19 15 14 35 35 H 1.08007 * 119.91377 * 179.72563 * 20 12 11 36 36 H 1.08001 * 120.08294 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3462 -0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8844 2.3964 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0531 -1.2318 -0.2720 9 6 1.3485 -2.4069 0.3575 10 6 0.2181 -2.3678 1.1974 11 6 -0.4109 -3.5272 1.5426 12 6 0.0562 -4.7496 1.0574 13 7 -0.5927 -5.9259 1.4088 14 6 -1.7679 -5.8813 2.2824 15 6 -2.2869 -7.3022 2.5120 16 8 -1.2774 -8.1903 2.9958 17 6 -3.0877 -7.8646 1.3257 18 6 -4.0459 -8.4737 2.3628 19 6 -3.5945 -7.3574 3.3194 20 6 1.1754 -4.7958 0.2248 21 6 1.8174 -3.6450 -0.1243 22 1 -0.4850 0.8402 -0.0004 23 1 -0.1465 -1.4223 1.5708 24 1 -1.2751 -3.4991 2.1896 25 1 -0.2679 -6.7771 1.0759 26 1 -1.4930 -5.4364 3.2388 27 1 -2.5471 -5.2809 1.8130 28 1 -0.4609 -8.1772 2.4779 29 1 -3.5475 -7.0952 0.7053 30 1 -2.5430 -8.6086 0.7446 31 1 -3.7574 -9.4725 2.6902 32 1 -5.0963 -8.4073 2.0790 33 1 -3.4588 -7.6921 4.3478 34 1 -4.1929 -6.4494 3.2442 35 1 1.5340 -5.7458 -0.1433 36 1 2.6836 -3.6823 -0.7682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691274555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:18 Heat of formation + Delta-G solvation = -8.441079 kcal Electronic energy + Delta-G solvation = -17354.809619 eV Core-core repulsion = 14611.045056 eV Total energy + Delta-G solvation = -2743.764563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83963 -37.78653 -34.95832 -34.52063 -32.83577 -29.50578 -29.24606 -27.07551 -25.81744 -24.17843 -22.67226 -21.01311 -19.95121 -19.72645 -17.22524 -17.08429 -15.99876 -15.34277 -15.06648 -14.84805 -14.49994 -13.92841 -13.84381 -13.17870 -12.68061 -12.60834 -12.36579 -12.12265 -11.93853 -11.67457 -11.28853 -11.22091 -11.04846 -10.97968 -10.82571 -10.49078 -10.23630 -9.70051 -9.67632 -9.30231 -9.25087 -8.56491 -7.51349 -6.64891 -6.41879 -4.05461 2.89521 3.08360 3.15220 3.20664 3.33170 3.94556 4.04957 4.09471 4.47067 4.69084 4.76208 4.78565 4.84292 5.37574 5.57258 5.64289 5.73000 5.78882 5.82385 5.84596 6.02609 6.19540 6.24138 6.24359 6.30611 6.88253 6.91776 7.18491 7.33930 7.51069 7.55637 7.67219 7.81451 8.14137 8.25760 8.45664 8.63897 8.77095 9.05096 9.13242 10.37062 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.049018 B = 0.004330 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.077645 B = 6464.323947 C = 6780.037067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.124 4.124 11 C -0.162 4.162 12 C 0.090 3.910 13 N -0.760 5.760 14 C 0.123 3.877 15 C 0.098 3.902 16 O -0.542 6.542 17 C -0.162 4.162 18 C -0.135 4.135 19 C -0.124 4.124 20 C -0.158 4.158 21 C -0.186 4.186 22 H 0.275 0.725 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.379 0.621 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.379 0.621 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -10.661 3.689 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.144 4.144 11 C -0.184 4.184 12 C -0.006 4.006 13 N -0.398 5.398 14 C -0.003 4.003 15 C 0.057 3.943 16 O -0.348 6.348 17 C -0.200 4.200 18 C -0.173 4.173 19 C -0.162 4.162 20 C -0.180 4.180 21 C -0.207 4.207 22 H 0.086 0.914 23 H 0.136 0.864 24 H 0.105 0.895 25 H 0.212 0.788 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.227 0.773 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.800 -10.522 4.233 13.224 hybrid contribution 0.850 0.656 -0.656 1.258 sum -5.950 -9.866 3.578 12.064 Atomic orbital electron populations 1.69858 1.07369 1.28508 1.37881 1.25796 0.94665 1.00900 0.92705 0.86356 0.80972 0.81555 0.78322 1.18625 1.20269 1.19958 1.19410 0.97575 0.91246 1.41581 0.90885 1.17510 0.92401 0.92039 0.90820 1.20936 0.98155 0.96357 0.98912 1.20093 1.01605 0.91980 1.04735 1.17314 0.95714 0.85485 1.02121 1.43709 1.32598 1.05965 1.57482 1.21563 0.89248 0.94855 0.94620 1.22482 0.88170 0.88651 0.95032 1.86435 1.27012 1.63682 1.57669 1.23594 0.98592 1.00904 0.96907 1.22763 0.99124 0.98532 0.96869 1.22982 0.94108 0.99743 0.99355 1.19800 0.97791 0.97089 1.03311 1.20552 1.02643 0.92678 1.04803 0.91379 0.86382 0.89451 0.78823 0.92774 0.92386 0.77290 0.89151 0.91177 0.90021 0.91427 0.90550 0.88643 0.89612 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.52 10.96 55.54 0.61 -20.91 16 2 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 3 Si 0.90 19.25 29.59 -169.99 -5.03 14.22 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 8 H 0.07 1.93 7.90 -52.49 -0.41 1.51 16 9 C 0.08 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 11 C -0.16 -3.80 9.23 -39.77 -0.37 -4.17 16 12 C 0.09 1.95 6.67 -83.69 -0.56 1.39 16 13 N -0.76 -12.78 5.48 -58.50 -0.32 -13.10 16 14 C 0.12 1.83 4.47 -4.04 -0.02 1.81 16 15 C 0.10 1.21 1.41 -89.81 -0.13 1.08 16 16 O -0.54 -6.96 13.41 -35.23 -0.47 -7.44 16 17 C -0.16 -1.79 7.47 -25.92 -0.19 -1.98 16 18 C -0.14 -1.34 8.02 -25.91 -0.21 -1.55 16 19 C -0.12 -1.33 7.47 -25.92 -0.19 -1.52 16 20 C -0.16 -3.51 9.82 -39.77 -0.39 -3.90 16 21 C -0.19 -4.61 9.74 -39.27 -0.38 -5.00 16 22 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 23 H 0.12 3.22 6.19 -52.49 -0.32 2.90 16 24 H 0.09 1.88 6.68 -52.49 -0.35 1.52 16 25 H 0.38 5.50 7.32 -40.82 -0.30 5.21 16 26 H 0.05 0.87 7.92 -51.93 -0.41 0.46 16 27 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 28 H 0.38 4.07 7.62 45.56 0.35 4.42 16 29 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -28.78 298.03 -8.89 -37.67 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.37 Total: 12.29 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -3.80 Total: -27.23 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.29 Total: -34.01 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.47 Total: -7.44 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.78 -8.89 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691274555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.229 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds