Wall clock time and date at job start Mon Mar 30 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00564 * 2 1 4 4 H 1.48499 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46711 * 299.99753 * 3 2 1 6 6 H 1.48493 * 109.47186 * 59.99438 * 3 2 1 7 7 C 1.39872 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99980 * 163.05734 * 7 2 1 9 9 C 1.41135 * 119.99817 * 343.04723 * 7 2 1 10 10 C 1.40889 * 120.15700 * 334.54291 * 9 7 2 11 11 C 1.36343 * 119.83518 * 180.27277 * 10 9 7 12 12 C 1.39570 * 120.15913 * 359.49263 * 11 10 9 13 13 N 1.38853 * 119.83989 * 180.25905 * 12 11 10 14 14 C 1.46498 * 120.00232 * 0.24862 * 13 12 11 15 15 C 1.52997 * 109.47205 * 180.02562 * 14 13 12 16 16 O 1.42897 * 112.85256 * 53.80145 * 15 14 13 17 17 C 1.53783 * 113.61233 * 282.49489 * 15 14 13 18 18 C 1.53784 * 87.08184 * 220.02191 * 17 15 14 19 19 C 1.53784 * 113.61287 * 184.99824 * 15 14 13 20 20 C 1.39569 * 120.31288 * 0.50366 * 12 11 10 21 21 C 1.36330 * 120.16428 * 359.75718 * 20 12 11 22 22 H 0.97009 * 119.99636 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.08289 * 359.97438 * 10 9 7 24 24 H 1.07994 * 119.91551 * 179.74763 * 11 10 9 25 25 H 0.97001 * 120.00216 * 180.24713 * 13 12 11 26 26 H 1.09004 * 109.46919 * 299.99841 * 14 13 12 27 27 H 1.08998 * 109.47335 * 59.99969 * 14 13 12 28 28 H 0.96698 * 113.99670 * 309.66220 * 16 15 14 29 29 H 1.09006 * 113.61409 * 334.56884 * 17 15 14 30 30 H 1.08996 * 113.62019 * 105.47021 * 17 15 14 31 31 H 1.08997 * 113.61199 * 270.88096 * 18 17 15 32 32 H 1.09002 * 113.61702 * 139.98185 * 18 17 15 33 33 H 1.08997 * 113.61553 * 254.52502 * 19 15 14 34 34 H 1.09003 * 113.61705 * 25.43018 * 19 15 14 35 35 H 1.08007 * 119.91377 * 179.72563 * 20 12 11 36 36 H 1.08001 * 120.08294 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3462 -0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8844 2.3964 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0531 -1.2318 -0.2720 9 6 1.3485 -2.4069 0.3575 10 6 0.2181 -2.3678 1.1974 11 6 -0.4109 -3.5272 1.5426 12 6 0.0562 -4.7496 1.0574 13 7 -0.5927 -5.9259 1.4088 14 6 -1.7679 -5.8813 2.2824 15 6 -2.2869 -7.3022 2.5120 16 8 -1.2774 -8.1903 2.9958 17 6 -3.0877 -7.8646 1.3257 18 6 -4.0459 -8.4737 2.3628 19 6 -3.5945 -7.3574 3.3194 20 6 1.1754 -4.7958 0.2248 21 6 1.8174 -3.6450 -0.1243 22 1 -0.4850 0.8402 -0.0004 23 1 -0.1465 -1.4223 1.5708 24 1 -1.2751 -3.4991 2.1896 25 1 -0.2679 -6.7771 1.0759 26 1 -1.4930 -5.4364 3.2388 27 1 -2.5471 -5.2809 1.8130 28 1 -0.4609 -8.1772 2.4779 29 1 -3.5475 -7.0952 0.7053 30 1 -2.5430 -8.6086 0.7446 31 1 -3.7574 -9.4725 2.6902 32 1 -5.0963 -8.4073 2.0790 33 1 -3.4588 -7.6921 4.3478 34 1 -4.1929 -6.4494 3.2442 35 1 1.5340 -5.7458 -0.1433 36 1 2.6836 -3.6823 -0.7682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691274555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:17 Heat of formation + Delta-G solvation = -26.590829 kcal Electronic energy + Delta-G solvation = -17355.596651 eV Core-core repulsion = 14611.045056 eV Total energy + Delta-G solvation = -2744.551595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85797 -39.53326 -36.50149 -35.61201 -34.60355 -31.37382 -30.95935 -28.53270 -26.72621 -25.87276 -23.92609 -22.77766 -21.67330 -20.64913 -19.16032 -18.44851 -17.22797 -16.86515 -16.51621 -15.95789 -15.81705 -15.50802 -15.14593 -14.58477 -14.44476 -14.07699 -13.73859 -13.61941 -13.28702 -13.22408 -12.86417 -12.74726 -12.52820 -12.27268 -12.11623 -11.78405 -11.57549 -11.23512 -11.14881 -11.09410 -10.65647 -10.30970 -9.41729 -8.55146 -8.19254 -6.02645 1.09265 1.17529 1.40422 1.54597 1.57267 2.27494 2.74392 2.84128 3.06087 3.56088 3.75533 3.81183 3.84555 3.92343 4.42195 4.46443 4.51205 4.60744 4.75997 4.79115 4.82807 5.01081 5.04021 5.06453 5.12640 5.25850 5.28929 5.43151 5.44655 5.66254 5.78681 5.94143 6.18372 6.36952 6.61747 6.66933 6.84653 7.07963 7.11521 7.27062 8.48423 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.049018 B = 0.004330 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.077645 B = 6464.323947 C = 6780.037067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.144 4.144 11 C -0.174 4.174 12 C 0.111 3.889 13 N -0.747 5.747 14 C 0.122 3.878 15 C 0.098 3.902 16 O -0.551 6.551 17 C -0.160 4.160 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.163 4.163 21 C -0.195 4.195 22 H 0.282 0.718 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.395 0.605 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.386 0.614 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 -12.050 3.811 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.164 4.164 11 C -0.197 4.197 12 C 0.012 3.988 13 N -0.383 5.383 14 C -0.003 4.003 15 C 0.056 3.944 16 O -0.358 6.358 17 C -0.198 4.198 18 C -0.164 4.164 19 C -0.163 4.163 20 C -0.185 4.185 21 C -0.215 4.215 22 H 0.092 0.908 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.230 0.770 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.236 0.764 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.362 -11.965 4.360 14.710 hybrid contribution 0.962 0.890 -0.657 1.466 sum -6.400 -11.075 3.703 13.317 Atomic orbital electron populations 1.69920 1.08757 1.29704 1.38762 1.26606 0.95458 1.04089 0.91835 0.85247 0.79386 0.76863 0.78679 1.18423 1.19336 1.19174 1.19635 0.97645 0.92667 1.43797 0.91395 1.17834 0.93533 0.93148 0.92210 1.20855 0.98951 0.96616 0.99952 1.20245 1.02118 0.92013 1.05286 1.17413 0.94924 0.86433 1.00058 1.43685 1.32559 1.05129 1.56969 1.21681 0.88249 0.96955 0.93461 1.22531 0.88454 0.86864 0.96536 1.86436 1.27604 1.63564 1.58208 1.23582 0.98587 1.00948 0.96673 1.22725 0.99842 0.98098 0.95769 1.23071 0.93219 1.00673 0.99355 1.20115 0.97592 0.97762 1.03013 1.20777 1.03024 0.92928 1.04785 0.90782 0.88425 0.87935 0.77016 0.93867 0.92557 0.76392 0.89292 0.90735 0.89953 0.89813 0.90653 0.87660 0.86128 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.24 10.96 21.82 0.24 -46.00 16 2 C 0.03 1.68 5.15 85.23 0.44 2.12 16 3 Si 0.98 40.25 29.59 68.60 2.03 42.28 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.51 -28.57 9.03 23.38 0.21 -28.36 16 8 H 0.07 3.72 7.90 -2.91 -0.02 3.70 16 9 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 10 C -0.14 -7.79 8.63 22.48 0.19 -7.60 16 11 C -0.17 -8.18 9.23 22.15 0.20 -7.98 16 12 C 0.11 4.61 6.67 38.67 0.26 4.87 16 13 N -0.75 -23.26 5.48 -338.99 -1.86 -25.12 16 14 C 0.12 3.38 4.47 86.38 0.39 3.77 16 15 C 0.10 2.16 1.41 -10.27 -0.01 2.14 16 16 O -0.55 -12.75 13.41 -148.98 -2.00 -14.75 16 17 C -0.16 -3.08 7.47 31.12 0.23 -2.85 16 18 C -0.13 -2.13 8.02 31.12 0.25 -1.88 16 19 C -0.13 -2.38 7.47 31.12 0.23 -2.14 16 20 C -0.16 -6.98 9.82 22.15 0.22 -6.76 16 21 C -0.20 -9.70 9.74 22.47 0.22 -9.48 16 22 H 0.28 14.02 8.30 -92.70 -0.77 13.25 16 23 H 0.10 5.60 6.19 -2.91 -0.02 5.58 16 24 H 0.10 4.38 6.68 -2.91 -0.02 4.36 16 25 H 0.39 10.17 7.32 -92.71 -0.68 9.49 16 26 H 0.04 1.32 7.92 -2.38 -0.02 1.30 16 27 H 0.06 1.62 7.85 -2.39 -0.02 1.60 16 28 H 0.39 7.25 7.62 -74.06 -0.56 6.68 16 29 H 0.09 1.76 8.04 -2.38 -0.02 1.74 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -62.78 298.03 0.97 -61.81 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.15 Total: 34.06 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 2.71 Total: -52.28 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.62 Total: -71.12 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -2.00 Total: -14.75 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -62.78 0.97 -61.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691274555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.215 kcal (2) G-P(sol) polarization free energy of solvation -62.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds