Wall clock time and date at job start Mon Mar 30 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47388 * 2 1 4 4 C 1.52999 * 109.46976 * 119.99871 * 2 1 3 5 5 C 1.50698 * 109.47172 * 295.00156 * 4 2 1 6 6 H 1.08000 * 119.99733 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00116 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99960 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47536 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47092 * 119.99775 * 9 7 5 12 12 H 1.48501 * 109.47263 * 239.99560 * 9 7 5 13 13 N 1.46498 * 109.47138 * 239.99867 * 2 1 3 14 14 C 1.36821 * 125.06810 * 300.02643 * 13 2 1 15 15 C 1.34239 * 109.93153 * 180.24683 * 14 13 2 16 16 C 1.46492 * 107.00772 * 359.59416 * 15 14 13 17 17 C 1.39668 * 133.97114 * 180.13396 * 16 15 14 18 18 C 1.37797 * 119.62954 * 180.33017 * 17 16 15 19 19 F 1.35094 * 119.83174 * 179.97438 * 18 17 16 20 20 C 1.39030 * 120.33023 * 359.95942 * 18 17 16 21 21 C 1.37710 * 120.65089 * 0.02562 * 20 18 17 22 22 C 1.37810 * 125.07175 * 120.00620 * 13 2 1 23 23 H 1.09004 * 109.46923 * 60.00208 * 1 2 3 24 24 H 1.09003 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47448 * 300.00210 * 1 2 3 26 26 H 1.09010 * 109.47040 * 54.99922 * 4 2 1 27 27 H 1.08995 * 109.47492 * 174.99709 * 4 2 1 28 28 H 0.96995 * 120.00019 * 180.02562 * 8 7 5 29 29 H 1.08002 * 125.03098 * 359.97438 * 14 13 2 30 30 H 1.07997 * 126.49710 * 179.73605 * 15 14 13 31 31 H 1.08008 * 120.18911 * 0.29429 * 17 16 15 32 32 H 1.08003 * 119.67643 * 179.97438 * 20 18 17 33 33 H 1.08001 * 120.02506 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5635 5.2495 10 1 0.7430 1.7750 4.8433 11 1 0.6457 -0.2854 6.1188 12 1 2.7178 0.9683 5.9959 13 7 2.0183 -0.6906 -1.1961 14 6 1.7520 -1.9943 -1.5149 15 6 2.3538 -2.3146 -2.6713 16 6 3.0555 -1.1155 -3.1358 17 6 3.8420 -0.8237 -4.2525 18 6 4.3778 0.4375 -4.3976 19 9 5.1395 0.7242 -5.4758 20 6 4.1380 1.4166 -3.4400 21 6 3.3642 1.1426 -2.3343 22 6 2.8141 -0.1241 -2.1682 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7995 1.2057 28 1 2.9235 -1.8416 4.7318 29 1 1.1507 -2.6672 -0.9216 30 1 2.3241 -3.2739 -3.1667 31 1 4.0297 -1.5824 -4.9979 32 1 4.5635 2.4015 -3.5641 33 1 3.1841 1.9109 -1.5969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:17 Heat of formation + Delta-G solvation = -13.673039 kcal Electronic energy + Delta-G solvation = -17168.350529 eV Core-core repulsion = 14300.898786 eV Total energy + Delta-G solvation = -2867.451743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -49.73330 -42.27398 -38.13433 -36.21106 -34.34284 -32.33029 -29.81977 -29.70269 -28.74309 -25.69803 -23.92370 -23.07125 -22.54728 -20.32285 -18.78763 -18.22846 -17.78542 -17.20967 -16.64291 -16.47304 -16.00404 -15.59836 -15.30842 -14.71701 -14.48827 -14.15344 -14.03309 -13.68215 -13.61148 -13.41432 -13.08925 -12.86538 -12.74720 -12.37210 -12.23312 -11.89327 -11.78347 -11.41780 -11.33206 -10.63699 -10.60578 -9.08047 -8.55198 -8.23675 -6.35658 0.04950 0.47514 1.40577 1.42212 1.53917 1.81298 1.97501 2.40600 2.76864 3.11158 3.34618 3.64341 3.83095 3.99922 4.03604 4.25778 4.31433 4.43150 4.48058 4.63326 4.77641 4.91051 4.98517 5.03562 5.06546 5.23753 5.25019 5.29552 5.37216 5.47663 5.71589 5.81840 5.90319 6.07650 6.31859 6.45048 6.79539 7.34429 8.88042 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034702 B = 0.005134 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.674780 B = 5452.929574 C = 5726.256835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.141 3.859 3 H 0.087 0.913 4 C 0.030 3.970 5 C -0.532 4.532 6 H 0.072 0.928 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.257 1.257 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.473 5.473 14 C 0.060 3.940 15 C -0.219 4.219 16 C -0.107 4.107 17 C -0.109 4.109 18 C 0.050 3.950 19 F -0.148 7.148 20 C -0.133 4.133 21 C -0.105 4.105 22 C 0.065 3.935 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.004 0.996 27 H -0.017 1.017 28 H 0.263 0.737 29 H 0.176 0.824 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 2.930 -12.931 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.007 4.007 5 C -0.570 4.570 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.180 1.180 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.154 5.154 14 C -0.067 4.067 15 C -0.243 4.243 16 C -0.112 4.112 17 C -0.129 4.129 18 C 0.030 3.970 19 F -0.127 7.127 20 C -0.153 4.153 21 C -0.125 4.125 22 C -0.042 4.042 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.022 0.978 27 H 0.001 0.999 28 H 0.072 0.928 29 H 0.193 0.807 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.176 0.824 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.672 2.984 -12.541 12.999 hybrid contribution 0.217 0.095 0.991 1.019 sum -1.455 3.079 -11.550 12.041 Atomic orbital electron populations 1.21956 0.92476 1.02687 1.02483 1.21544 0.96056 0.96189 0.82202 0.89483 1.19244 0.94388 0.95496 0.91595 1.21490 1.35387 1.09000 0.91156 0.90946 1.25917 0.94856 0.95920 1.02711 1.70108 1.39692 1.22876 1.24530 0.85409 0.77980 0.78985 0.78762 1.18011 1.20567 1.20982 1.44666 1.41424 1.10467 1.18797 1.22180 1.01588 0.85383 0.97534 1.21864 1.05529 0.98618 0.98282 1.19200 1.01899 0.94762 0.95337 1.20523 0.98278 0.95877 0.98174 1.17383 0.97965 0.94918 0.86711 1.91442 1.73861 1.94135 1.53225 1.20906 1.00753 1.00251 0.93387 1.20099 0.99256 0.94095 0.99094 1.18749 0.98279 0.95904 0.91281 0.91853 0.92375 0.90382 0.97758 0.99852 0.92772 0.80695 0.81107 0.83188 0.82391 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.04 71.98 0.65 -3.87 16 2 C 0.14 5.38 2.95 44.99 0.13 5.51 16 3 H 0.09 3.25 7.33 -2.39 -0.02 3.24 16 4 C 0.03 1.49 4.43 29.85 0.13 1.62 16 5 C -0.53 -27.59 8.41 25.60 0.22 -27.37 16 6 H 0.07 3.51 7.06 -2.91 -0.02 3.49 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 9 Si 0.96 41.83 29.54 68.60 2.03 43.85 16 10 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.47 -16.95 2.66 -493.51 -1.31 -18.26 16 14 C 0.06 1.95 10.24 83.00 0.85 2.80 16 15 C -0.22 -6.47 11.08 23.51 0.26 -6.20 16 16 C -0.11 -3.41 6.37 -20.20 -0.13 -3.53 16 17 C -0.11 -3.08 10.07 22.51 0.23 -2.86 16 18 C 0.05 1.41 7.29 22.36 0.16 1.58 16 19 F -0.15 -4.02 17.26 44.97 0.78 -3.25 16 20 C -0.13 -3.56 9.99 22.33 0.22 -3.33 16 21 C -0.11 -3.17 9.80 22.35 0.22 -2.95 16 22 C 0.07 2.24 6.81 38.99 0.27 2.51 16 23 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.06 1.85 7.89 -2.39 -0.02 1.83 16 25 H 0.08 2.63 6.95 -2.39 -0.02 2.61 16 26 H 0.00 0.21 8.04 -2.38 -0.02 0.19 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.18 5.15 8.06 -2.91 -0.02 5.12 16 30 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.14 3.76 7.55 -2.91 -0.02 3.74 16 Total: -1.00 -60.93 287.64 6.55 -54.38 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.10 Total: 12.89 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.67 Total: -35.40 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.03 Total: -72.47 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -60.93 6.55 -54.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.703 kcal (2) G-P(sol) polarization free energy of solvation -60.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds