Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47249 * 2 1 4 4 C 1.53002 * 109.47356 * 240.00211 * 2 1 3 5 5 C 1.50709 * 109.46968 * 64.99817 * 4 2 1 6 6 H 1.08000 * 119.99842 * 0.02562 * 5 4 2 7 7 C 1.37867 * 120.00009 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00316 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00203 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47201 * 89.99927 * 9 7 5 11 11 H 1.48500 * 109.47353 * 210.00252 * 9 7 5 12 12 H 1.48509 * 109.47131 * 330.00008 * 9 7 5 13 13 N 1.46495 * 109.47326 * 120.00458 * 2 1 3 14 14 C 1.36815 * 125.07023 * 59.95705 * 13 2 1 15 15 C 1.34244 * 109.93150 * 180.02562 * 14 13 2 16 16 C 1.46492 * 107.01205 * 0.02562 * 15 14 13 17 17 C 1.39667 * 133.97180 * 180.02562 * 16 15 14 18 18 C 1.37790 * 119.62641 * 180.27946 * 17 16 15 19 19 F 1.35108 * 119.83004 * 179.72261 * 18 17 16 20 20 C 1.39036 * 120.33492 * 359.37611 * 18 17 16 21 21 C 1.37712 * 120.64685 * 0.66200 * 20 18 17 22 22 C 1.37818 * 125.06869 * 240.00191 * 13 2 1 23 23 H 1.09000 * 109.47016 * 59.99991 * 1 2 3 24 24 H 1.09005 * 109.46793 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46924 * 299.99608 * 1 2 3 26 26 H 1.08993 * 109.47651 * 184.99666 * 4 2 1 27 27 H 1.08998 * 109.46982 * 305.00016 * 4 2 1 28 28 H 0.97002 * 120.00404 * 180.02562 * 8 7 5 29 29 H 1.07999 * 125.03172 * 0.03982 * 14 13 2 30 30 H 1.08001 * 126.49085 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.18227 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.67577 * 180.31854 * 20 18 17 33 33 H 1.08001 * 120.02392 * 179.67968 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9924 -0.4020 -3.7283 8 7 2.6756 -1.5190 -3.8513 9 14 1.4988 0.5631 -5.2496 10 1 2.5648 1.5419 -5.5824 11 1 1.3110 -0.3706 -6.3889 12 1 0.2280 1.2854 -4.9869 13 7 2.0184 -0.6907 1.1961 14 6 1.7519 -1.9942 1.5150 15 6 2.3489 -2.3129 2.6744 16 6 3.0551 -1.1154 3.1362 17 6 3.8422 -0.8238 4.2525 18 6 4.3724 0.4393 4.4009 19 9 5.1297 0.7275 5.4820 20 6 4.1380 1.4166 3.4402 21 6 3.3634 1.1430 2.3350 22 6 2.8141 -0.1240 2.1683 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.1263 -0.7994 -1.2057 27 1 1.6055 -1.7197 -1.2952 28 1 2.9229 -1.8419 -4.7319 29 1 1.1505 -2.6671 0.9218 30 1 2.3150 -3.2707 3.1722 31 1 4.0300 -1.5827 4.9976 32 1 4.5631 2.4016 3.5646 33 1 3.1835 1.9113 1.5975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -0.593506 kcal Electronic energy + Delta-G solvation = -17167.451906 eV Core-core repulsion = 14300.567334 eV Total energy + Delta-G solvation = -2866.884572 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.56450 -41.00875 -36.82769 -34.64990 -32.53086 -30.99266 -28.59937 -28.24292 -27.12875 -23.92982 -22.68888 -21.60791 -21.26775 -18.97392 -17.10022 -16.96891 -16.23663 -15.93935 -15.33019 -14.83705 -14.68627 -14.21283 -13.89808 -13.35156 -13.04976 -12.84736 -12.47363 -12.42039 -12.20230 -12.02316 -11.59779 -11.11021 -11.03585 -10.93188 -10.62193 -10.56925 -10.23009 -9.81853 -9.39701 -9.30915 -8.54834 -7.84174 -7.28960 -6.18789 -4.23968 1.23943 1.69467 3.06333 3.21083 3.25332 3.28962 3.33272 3.98342 4.31133 4.52824 4.83484 5.11072 5.16039 5.18657 5.33299 5.50685 5.68785 5.74100 5.83556 5.88652 5.99825 6.17118 6.20856 6.32236 6.43285 6.48723 6.55623 6.64888 6.99068 7.08740 7.34449 7.40056 7.62368 7.66001 7.82833 8.13578 8.80694 9.41429 10.92237 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.005132 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.883330 B = 5454.396015 C = 5727.982917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.086 0.914 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.461 5.461 14 C 0.084 3.916 15 C -0.229 4.229 16 C -0.088 4.088 17 C -0.110 4.110 18 C 0.057 3.943 19 F -0.150 7.150 20 C -0.142 4.142 21 C -0.092 4.092 22 C 0.089 3.911 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.167 0.833 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 1.917 12.077 12.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.104 0.896 4 C -0.018 4.018 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.141 5.141 14 C -0.045 4.045 15 C -0.254 4.254 16 C -0.093 4.093 17 C -0.130 4.130 18 C 0.037 3.963 19 F -0.129 7.129 20 C -0.162 4.162 21 C -0.112 4.112 22 C -0.019 4.019 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.184 0.816 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.146 1.962 11.657 11.876 hybrid contribution -0.019 0.436 -0.832 0.939 sum -1.165 2.398 10.825 11.149 Atomic orbital electron populations 1.22055 0.94373 1.02301 1.01793 1.21895 0.94708 0.96941 0.83542 0.89605 1.19454 0.97074 0.95993 0.89251 1.21014 1.36233 1.08713 0.90441 0.92193 1.24991 0.94838 0.94994 0.99249 1.69960 1.37962 1.20896 1.23931 0.86539 0.79003 0.79763 0.82406 1.20518 1.21086 1.19731 1.44769 1.40523 1.09815 1.18957 1.21857 1.00463 0.85578 0.96566 1.21497 1.07072 0.97975 0.98847 1.18923 1.01050 0.94495 0.94861 1.20283 0.99236 0.95170 0.98287 1.17242 0.98074 0.94618 0.86361 1.91437 1.74211 1.94123 1.53135 1.20621 1.01969 0.99255 0.94368 1.19886 0.98739 0.94286 0.98274 1.18350 0.97816 0.94763 0.90970 0.89798 0.92566 0.93993 0.95865 0.95732 0.92683 0.81587 0.83863 0.85343 0.85012 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.04 37.16 0.34 -2.15 16 2 C 0.13 2.46 2.95 -67.93 -0.20 2.26 16 3 H 0.09 1.61 7.33 -51.93 -0.38 1.23 16 4 C 0.02 0.47 4.43 -27.88 -0.12 0.35 16 5 C -0.53 -13.55 8.41 -34.44 -0.29 -13.84 16 6 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.46 -8.28 2.66 -107.33 -0.29 -8.57 16 14 C 0.08 1.37 10.25 -16.74 -0.17 1.20 16 15 C -0.23 -3.53 11.08 -37.67 -0.42 -3.95 16 16 C -0.09 -1.46 6.37 -105.14 -0.67 -2.13 16 17 C -0.11 -1.66 10.07 -39.21 -0.40 -2.06 16 18 C 0.06 0.86 7.29 -39.45 -0.29 0.57 16 19 F -0.15 -2.21 17.26 2.25 0.04 -2.17 16 20 C -0.14 -2.04 9.99 -39.48 -0.39 -2.43 16 21 C -0.09 -1.43 9.80 -39.45 -0.39 -1.82 16 22 C 0.09 1.56 6.81 -83.95 -0.57 0.98 16 23 H 0.08 1.46 6.95 -51.93 -0.36 1.10 16 24 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.61 8.04 -51.93 -0.42 0.20 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.17 2.43 8.06 -52.49 -0.42 2.00 16 30 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 1.82 7.55 -52.49 -0.40 1.42 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -28.42 287.65 -7.87 -36.29 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.01 Total: 0.80 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.67 Total: -21.43 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.45 Total: -33.24 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.42 -7.87 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.696 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds