Wall clock time and date at job start Mon Mar 30 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47249 * 2 1 4 4 C 1.53002 * 109.47356 * 240.00211 * 2 1 3 5 5 C 1.50709 * 109.46968 * 64.99817 * 4 2 1 6 6 H 1.08000 * 119.99842 * 0.02562 * 5 4 2 7 7 C 1.37867 * 120.00009 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00316 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00203 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47201 * 89.99927 * 9 7 5 11 11 H 1.48500 * 109.47353 * 210.00252 * 9 7 5 12 12 H 1.48509 * 109.47131 * 330.00008 * 9 7 5 13 13 N 1.46495 * 109.47326 * 120.00458 * 2 1 3 14 14 C 1.36815 * 125.07023 * 59.95705 * 13 2 1 15 15 C 1.34244 * 109.93150 * 180.02562 * 14 13 2 16 16 C 1.46492 * 107.01205 * 0.02562 * 15 14 13 17 17 C 1.39667 * 133.97180 * 180.02562 * 16 15 14 18 18 C 1.37790 * 119.62641 * 180.27946 * 17 16 15 19 19 F 1.35108 * 119.83004 * 179.72261 * 18 17 16 20 20 C 1.39036 * 120.33492 * 359.37611 * 18 17 16 21 21 C 1.37712 * 120.64685 * 0.66200 * 20 18 17 22 22 C 1.37818 * 125.06869 * 240.00191 * 13 2 1 23 23 H 1.09000 * 109.47016 * 59.99991 * 1 2 3 24 24 H 1.09005 * 109.46793 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46924 * 299.99608 * 1 2 3 26 26 H 1.08993 * 109.47651 * 184.99666 * 4 2 1 27 27 H 1.08998 * 109.46982 * 305.00016 * 4 2 1 28 28 H 0.97002 * 120.00404 * 180.02562 * 8 7 5 29 29 H 1.07999 * 125.03172 * 0.03982 * 14 13 2 30 30 H 1.08001 * 126.49085 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.18227 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.67577 * 180.31854 * 20 18 17 33 33 H 1.08001 * 120.02392 * 179.67968 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9924 -0.4020 -3.7283 8 7 2.6756 -1.5190 -3.8513 9 14 1.4988 0.5631 -5.2496 10 1 2.5648 1.5419 -5.5824 11 1 1.3110 -0.3706 -6.3889 12 1 0.2280 1.2854 -4.9869 13 7 2.0184 -0.6907 1.1961 14 6 1.7519 -1.9942 1.5150 15 6 2.3489 -2.3129 2.6744 16 6 3.0551 -1.1154 3.1362 17 6 3.8422 -0.8238 4.2525 18 6 4.3724 0.4393 4.4009 19 9 5.1297 0.7275 5.4820 20 6 4.1380 1.4166 3.4402 21 6 3.3634 1.1430 2.3350 22 6 2.8141 -0.1240 2.1683 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.1263 -0.7994 -1.2057 27 1 1.6055 -1.7197 -1.2952 28 1 2.9229 -1.8419 -4.7319 29 1 1.1505 -2.6671 0.9218 30 1 2.3150 -3.2707 3.1722 31 1 4.0300 -1.5827 4.9976 32 1 4.5631 2.4016 3.5646 33 1 3.1835 1.9113 1.5975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:26 Heat of formation + Delta-G solvation = -13.611889 kcal Electronic energy + Delta-G solvation = -17168.016425 eV Core-core repulsion = 14300.567334 eV Total energy + Delta-G solvation = -2867.449091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -49.73031 -42.27310 -38.13436 -36.21029 -34.34185 -32.33020 -29.81915 -29.70186 -28.74316 -25.69658 -23.92348 -23.07090 -22.54713 -20.32248 -18.78479 -18.22793 -17.78319 -17.20958 -16.64342 -16.47214 -16.00324 -15.59976 -15.30932 -14.71752 -14.48124 -14.15220 -14.03282 -13.67994 -13.61136 -13.41367 -13.08296 -12.89359 -12.71191 -12.38359 -12.22699 -11.89781 -11.78300 -11.41599 -11.35144 -10.63357 -10.59965 -9.08030 -8.55196 -8.23348 -6.35508 0.04959 0.47479 1.41945 1.42194 1.52902 1.81486 1.97314 2.40776 2.76874 3.11368 3.34559 3.64337 3.83070 3.99915 4.03586 4.25746 4.31408 4.43115 4.48060 4.63329 4.77638 4.90992 4.98498 5.03553 5.06518 5.23745 5.25020 5.29536 5.37123 5.47724 5.71509 5.81833 5.90302 6.07666 6.31850 6.45034 6.79409 7.34580 8.88119 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.005132 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.883330 B = 5454.396015 C = 5727.982917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.141 3.859 3 H 0.087 0.913 4 C 0.031 3.969 5 C -0.533 4.533 6 H 0.072 0.928 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.473 5.473 14 C 0.060 3.940 15 C -0.219 4.219 16 C -0.107 4.107 17 C -0.109 4.109 18 C 0.050 3.950 19 F -0.148 7.148 20 C -0.133 4.133 21 C -0.105 4.105 22 C 0.065 3.935 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.063 0.937 26 H -0.017 1.017 27 H 0.004 0.996 28 H 0.264 0.736 29 H 0.176 0.824 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 2.924 12.922 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.007 4.007 5 C -0.571 4.571 6 H 0.090 0.910 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.153 5.153 14 C -0.067 4.067 15 C -0.243 4.243 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.030 3.970 19 F -0.127 7.127 20 C -0.153 4.153 21 C -0.125 4.125 22 C -0.042 4.042 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.001 0.999 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.193 0.807 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.176 0.824 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.680 2.972 12.529 12.986 hybrid contribution 0.223 0.110 -0.986 1.017 sum -1.457 3.083 11.542 12.036 Atomic orbital electron populations 1.21954 0.92481 1.02685 1.02472 1.21545 0.96047 0.96193 0.82207 0.89475 1.19240 0.94378 0.95493 0.91586 1.21460 1.35515 1.09000 0.91167 0.90953 1.25912 0.94865 0.95894 1.02699 1.70103 1.39652 1.22839 1.24589 0.85463 0.79171 0.78257 0.78282 1.20182 1.21176 1.18121 1.44665 1.41440 1.10444 1.18799 1.22180 1.01612 0.85413 0.97481 1.21865 1.05546 0.98687 0.98195 1.19202 1.01836 0.94797 0.95362 1.20520 0.98346 0.95822 0.98159 1.17386 0.98127 0.94888 0.86578 1.91446 1.74124 1.94102 1.52997 1.20908 1.00758 1.00288 0.93344 1.20100 0.99221 0.94088 0.99130 1.18754 0.98271 0.95889 0.91307 0.90407 0.92380 0.91842 0.99866 0.97758 0.92771 0.80695 0.81103 0.83187 0.82391 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.04 71.98 0.65 -3.87 16 2 C 0.14 5.38 2.95 44.99 0.13 5.51 16 3 H 0.09 3.26 7.33 -2.38 -0.02 3.24 16 4 C 0.03 1.50 4.43 29.85 0.13 1.64 16 5 C -0.53 -27.65 8.41 25.60 0.22 -27.43 16 6 H 0.07 3.50 7.06 -2.91 -0.02 3.48 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -54.50 13.29 21.44 0.28 -54.22 16 9 Si 0.96 41.80 29.54 68.60 2.03 43.82 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 13 N -0.47 -16.95 2.66 -493.49 -1.31 -18.26 16 14 C 0.06 1.95 10.25 83.00 0.85 2.80 16 15 C -0.22 -6.46 11.08 23.51 0.26 -6.20 16 16 C -0.11 -3.41 6.37 -20.20 -0.13 -3.53 16 17 C -0.11 -3.08 10.07 22.51 0.23 -2.85 16 18 C 0.05 1.41 7.29 22.36 0.16 1.58 16 19 F -0.15 -4.02 17.26 44.97 0.78 -3.25 16 20 C -0.13 -3.56 9.99 22.34 0.22 -3.33 16 21 C -0.11 -3.17 9.80 22.35 0.22 -2.95 16 22 C 0.07 2.24 6.81 38.99 0.27 2.50 16 23 H 0.08 2.62 6.95 -2.39 -0.02 2.61 16 24 H 0.06 1.85 7.89 -2.38 -0.02 1.83 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.00 0.21 8.04 -2.39 -0.02 0.19 16 28 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.18 5.15 8.06 -2.91 -0.02 5.12 16 30 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.14 3.76 7.55 -2.91 -0.02 3.74 16 Total: -1.00 -60.89 287.65 6.55 -54.33 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.10 Total: 13.00 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 3.67 Total: -35.43 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.03 Total: -72.47 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -60.89 6.55 -54.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.720 kcal (2) G-P(sol) polarization free energy of solvation -60.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds